slc25a55a (LOC106582726)


Basic Information

Item Value
gene id slc25a55a
gene name LOC106582726
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40733892 ~ 40749263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609255.2
GGCCCCTCCTTCACATGAATGAATGGAATTTTCCATTGTCTCGCGTTCGGTAAATTACAAGACTACGAGGCTGACGATACTTTCAAGTACAAGAACGAAAGATCTCATCTCACATTTATTTTAGAACTCTACTCAGCTGCTCATCAGCACTTGATCTACTGACCACTACAATCTACTTACAACTAGCTAAGATCTCACAGCTCTGTTCTACATCTGCGTTCTACATCTGCTACCTATCTCAAATATACCATGACCAAGCAGCAGATCAGCCTTCCCGCTAAACTGATTAATGGTGGTATTGCTGGCATTGTGGGGGTTACCTGTGTGTTTCCCATTGACCTGGTAAAGACCAGGCTACAGAACCAGAGGCAAGGCCAACAGATCTACAAAAACATGATGGACTGCCTTGTCAAAACCGTTAGATCAGAAGGATACTTTGGCATGTATAGAGGTGCTGCTGTGAATCTGACCCTGGTCACTCCTGAGAAGGCCATCAAACTAGCCGCAAATGACTTCTTCCGGCAGCATCTTAGCAAAAATGAGAAGGGTTTGACAGTGTTTAAGGAGATGTTGGCAGGTTGTGGTGCGGGCATGTGCCAGGTTGTCATTACTACTCCTATGGAAATGCTCAAGATTCAACTTCAGGATGCAGGAAGGCTAGCGGCTCAGCAGAGAAAGCCAGCCTCGATGTCACCCACTAAGCTGGCTGCCACCAGGGTGCTGAGCAGGTCTTACAACGCGGGGCCCAGCACAGCAACCAGTGCACTGTCTGCTACCCAAATCGCCCGGGAACTTCTCCGCACTCAAGGCATCCCGGGCCTCTACAAAGGCCTCTGGGCCACCCTCATGAgagatgtccccttctcCATGGTCTACTTCCCACTATTTGCCCACCTCAACCAGCTGGGCCAGCCCTCTCAAGATGAATCAGCACCCTTCTACTGGGCTTTCttctctggctgtctggctggctctACCGCAGCTGTGGCAGTCAATCCTTGTGATGTTGTGAAAACGAGATTGCAATCTCTAAACAAAGGTGCCAGTGAGGAGAGCTACAACGGTGTGGTTGACTGTGTCAGTAAGATCATGCGTAAGGAGGGTCCCTCTGCCTTCCTGAAGGGAGCAGGCTGCAGGGCGCTGGTCATCGCTCCTCTCTTCGGCATCGCACAGGTCATGTACTTTATTGGCATCGGAGAGTTcatcctggacctgtcccctttCAACTAACTACCCGTCTGCATGAGATGAGCAACCCTGGCTGGCTGTGCATGGGACTCTCACACGTCAGATGAAAAGTATCTCAGCAAAAGACTTGCAGCTATACACCATCAGTATATATTACAGAAAATAAACCCACGTAAGGACTGTTGAGGTGTCAGAGCTTTGGAGCCTGGAAAAGACAGGAAAACCTCCTGTATGGTCTAATGGCTGTACTGCACTTCctccaaatgttttcctggcttATTTAATGGGCTGTGACCAATGTTTTCGCCAGTTTGCTGAACTGGGGACCGAGAACTGCAGCAGGGGCTCTGGCTGGGGAGTCCCTCTGGTTCCTCTTTCTCTGTGAGGGACAGGAGGTGGGGACCACTTCAACACAACCAATGACTGAAGGCCATTTCAAActttgatttttattttttttgtcattcatTGTTTGTCTGCAATTTTTGGGGGGATAATTTAAGATTCCACATCTGTGCTGTTGCTTGAATGCAATACTGTGGAGTAAAGAGATTTTGTGTGGGTATTTCAAAGCAAGTACTGTATTTGCAATCATGTGACTTCAAGCCTTCGATTAATCTGATTTACATGTCTGAATTGTTAAATTCACTGAGGCCAAACATCTCTCGAAATATTCTAGAAGTAGctttaacatttttttaaagaagcaCATTTTTAACTGGCACCATTTCACCAAGGTTTAGTTTGAGATCGATGGACCAAGCACTTAATGGCTATTCCACATCAACACCTCAAGGTTTGTTGCCAGACAGATGACCCCATCATGGTTTAATGAATTGTCAGCACTGTTaatctttttttgtattttttttattctgaaTACTTGTGAGATTAATTCATATAATGTAGTATATACATTAGAGTTGTGGAGTGTTCTGTTATTGTCCATGTTACATCAGggagatatctatatatatatatatatgtcaagACTTAGATTAGTTAATggtcattattttttattttttttgtattaataACATGCCCCTAAATTTCA

Function

NR:

description
PREDICTED: mitochondrial glutamate carrier 1-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609255.2 True 2245 mRNA 0.45 10 40733892 40749263

Neighbor

gene id symbol gene type direction distance location
LOC110527758 LOC105008416 coding downstream 121843 40603451 ~ 40612049 (-)
LOC110527756 LOC106582724 coding downstream 137504 40585908 ~ 40596388 (-)
LOC110527755 LOC106582604 coding downstream 170940 40560358 ~ 40562952 (-)
LOC110527754 LOC106582722 coding downstream 220597 40507742 ~ 40513295 (-)
LOC110527750 LOC106582617 coding downstream 279247 40452385 ~ 40454645 (-)
tshba tshb coding upstream 4986 40754249 ~ 40756219 (-)
slc16a1a LOC106582732 coding upstream 54790 40804053 ~ 40816448 (-)
LOC110527764 LOC106582736 coding upstream 407402 41156665 ~ 41348915 (-)
mov10a LOC106582737 coding upstream 695687 41444950 ~ 41467330 (-)
capza1a LOC106582739 coding upstream 720303 41469566 ~ 41485470 (-)
G606953 NA non-coding downstream 116644 40617045 ~ 40617248 (-)
G606929 NA non-coding downstream 159542 40574150 ~ 40574350 (-)
G606924 NA non-coding downstream 168535 40564908 ~ 40565357 (-)
G607213 LOC106582731 non-coding upstream 24007 40773270 ~ 40782286 (-)
G607218 NA non-coding upstream 33526 40782789 ~ 40787940 (-)
G607250 NA non-coding upstream 75788 40825051 ~ 40825260 (-)
G607251 NA non-coding upstream 76055 40825318 ~ 40825618 (-)
G607256 NA non-coding upstream 84277 40833540 ~ 40833746 (-)
G606973 NA other downstream 104012 40629249 ~ 40629880 (-)
LOC110527741 LOC106582711 other downstream 509725 40135298 ~ 40275270 (-)
G606135 NA other downstream 892561 39838891 ~ 39841331 (-)
LOC110527723 LOC106582696 other downstream 1665064 39063005 ~ 39123578 (-)
G604484 NA other downstream 2094492 38584293 ~ 38639400 (-)
G607932 NA other upstream 411885 41161148 ~ 41163397 (-)
G608888 LOC106582750 other upstream 1195308 41944571 ~ 41951244 (-)
G608900 NA other upstream 1219306 41968569 ~ 42025704 (-)
G610047 NA other upstream 2086484 42835747 ~ 42836069 (-)

Expression


Co-expression Network