tshba (tshb)


Basic Information

Item Value
gene id tshba
gene name tshb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40754249 ~ 40756219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124543.1
GTGCCCAGCTCTACCAGGTTCTTGATTGTGTGACAGAACATCTTCGCTGTTTGCCAAATGGAATTGTCCGTGGCCATGTATGGTCTCCTTTGCCTGCTCTTCAGCCAAGCTGTGCCCATGTGTGTGCCCACGGATTACACTCTGTATGAGGAGAGACGTGAATGTGACTTCTGCGTGGCCATCAATACGACCATTTGCATGGGCTTCTGCTACTCAAGGGACAGTAACATGAAGGAGCTGGCCGGACCACGTTTCCTTATCCAGAGAGGCTGTACCTATGACCAGGTGGAGTACCGAACAGTCATACTACCTGGTTGCCCGCTCCATGCCAACCCTCTCTTCACCTACCCCGTGGCCCTCAGCTGCCACTGTGGCACCTGCAACACAGACAGTGATGAGTGTGCCCACAAGGCCAGCAGTGGAGACGGCGCCAGGTGTTCCAAGCCACTCAGACACATCTACCCATACCCTGGCCTGAACAGCTACATCCACCCCAACTGATAACGCTCTCCCTTCCCTGGATAGTTTGGCTGTAATGACCATAATGACCAATAAGGCAAGGAGAATGGTCCTTTCAAATCAAGTTTATGGTCAGTAGCCTAATCATTATGATAACAGAACAGCATTGTCGTACTCGTGTGTTTGTGGTGGATACAGTGAGCTACAGGGTGGTGTATCCTATTCATTGTGACATGTATTGTTGCTGTTGTGTTTGGTATGTGAATATGCCTTTTTGTTTGCCACTTTGCTTGCAATGGAGGCTGATCCTGCTATTTCTGTCTGCCTCATGTCTTTCCTGTCCATTGACTCACTGAGCTATTTTGTTTACGGTGAACCAATATCATGAATGGGACGTTATTAAAGCTGAAGTCTGT

Function

symbol description
tshb Predicted to contribute to hormone activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Implicated in congenital nongoitrous hypothyroidism 4 and hypothyroidism. Biomarker of hyperglycemia and severe acute respiratory syndrome.

NR:

description
thyrotropin subunit beta precursor

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05251 TSHB; thyrotropin subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124543.1 True 875 mRNA 0.49 3 40754249 40756219

Neighbor

gene id symbol gene type direction distance location
slc25a55a LOC106582726 coding downstream 4986 40733892 ~ 40749263 (-)
LOC110527758 LOC105008416 coding downstream 142200 40603451 ~ 40612049 (-)
LOC110527756 LOC106582724 coding downstream 157861 40585908 ~ 40596388 (-)
LOC110527755 LOC106582604 coding downstream 191297 40560358 ~ 40562952 (-)
LOC110527754 LOC106582722 coding downstream 240954 40507742 ~ 40513295 (-)
slc16a1a LOC106582732 coding upstream 47834 40804053 ~ 40816448 (-)
LOC110527764 LOC106582736 coding upstream 400446 41156665 ~ 41348915 (-)
mov10a LOC106582737 coding upstream 688731 41444950 ~ 41467330 (-)
capza1a LOC106582739 coding upstream 713347 41469566 ~ 41485470 (-)
wnt2ba LOC106582740 coding upstream 764009 41520228 ~ 41536290 (-)
G606953 NA non-coding downstream 137001 40617045 ~ 40617248 (-)
G606929 NA non-coding downstream 179899 40574150 ~ 40574350 (-)
G606924 NA non-coding downstream 188892 40564908 ~ 40565357 (-)
G607213 LOC106582731 non-coding upstream 17051 40773270 ~ 40782286 (-)
G607218 NA non-coding upstream 26570 40782789 ~ 40787940 (-)
G607250 NA non-coding upstream 68832 40825051 ~ 40825260 (-)
G607251 NA non-coding upstream 69099 40825318 ~ 40825618 (-)
G607256 NA non-coding upstream 77321 40833540 ~ 40833746 (-)
G606973 NA other downstream 124369 40629249 ~ 40629880 (-)
LOC110527741 LOC106582711 other downstream 530082 40135298 ~ 40275270 (-)
G606135 NA other downstream 912918 39838891 ~ 39841331 (-)
LOC110527723 LOC106582696 other downstream 1685421 39063005 ~ 39123578 (-)
G604484 NA other downstream 2114849 38584293 ~ 38639400 (-)
G607932 NA other upstream 404929 41161148 ~ 41163397 (-)
G608888 LOC106582750 other upstream 1188352 41944571 ~ 41951244 (-)
G608900 NA other upstream 1212350 41968569 ~ 42025704 (-)
G610047 NA other upstream 2079528 42835747 ~ 42836069 (-)

Expression


Co-expression Network