rhoca (rhoc)


Basic Information

Item Value
gene id rhoca
gene name rhoc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41414403 ~ 41439948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609267.2
CAATAGAGATTAAGCGCCACCACTGCCTTTCCTGATCGGTGGGAGGATCCTATGTTTGTCTGTCCTGTTTCTTAGCACCCTCTATGTAGGCTAATTTACCGAATACTGCAGCAAGGGTGTCACGATCCAGAGAGAAGGAAGGCAAATCGGGAGTAAAATCTGAACAGCGGCCAGAAGAGAGtAATGGCAGCCATTAGGAAGAAGCTGGTGATCGTAGGGGATGGAGCCTGTGGAAAGACTTGTCTTCTCATCGTCTTCAGTAAAGACCAGTTCCCCGAGGTCTACGTGCCCACAGTGTTCGAGAACTACATCGCTGACATCGAGGTTGATGGCAAACAGGTGGAGCTGGCGCTGTGGGATACAGCCGGCCAGGAGGACTACGACAGGTTGAGGCCTCTCTCCTACCCCGACACTGATGTCATCCTCATGTGCTTCTCTATCGACAGCCCTGACAGTTTAGAAAACATCCCGGAGAAGTGGACCCCTGAGGTGAAGCACTTCTGCCCCAACGTTCCAATCATCCTGGTGGGCAACAAGAAGGACCTGAGGAACGACGAACACACACGGAGGGagctggccaagatgaagcagGAGCCAGTGAAGCCAGAGGAAGGCCGGGACATGGCTAACCGTATCAGTGCCTTTGGCTACCTGGAGTGTTCAGCCAAGACAAAGGATGGCGTGAGGGAGGTTTTTGAGATGGCCACCAGGGCGGCGCTGCAGGTGCGCAAGCGCAAGAAGAGGGGTGCCTGCCTGctgttgtgaggaggaggaagacctcAGTCGTCAACTGACAaaacaacaatatatatatatatatatatatatatatacacgcagGACTGACCTTTTACCAAATGGCATCTTTGTACTGTATCTCATTTCACGCTAAAGAGGTTGGCGGCCGAAAGTGCTGAACGTAAAATAACAAGGAAAAGGACTGGTCTGTAACACAGGTTAGAAATTAGTGTTTAAACTTCTCagctttgtttttgtttgttaagCTTATTCCATGCAATGGGTACACTGTCTTTCGTCTAGTTTTTCCACAGCCgtctttttttccccccctgtCGCTTTTGAGAAGATAATAAATGCACATGTATTTGTATGCAAAAATATTTGGCTGTCCTTCCCTGGGCCTGTACAAACAGTCGGTCAACAGAGCTTGTGTTGTCAACATGCACACTGTTGTAATCAGGACTCACCCAAACTCTTGTTCATTTGTAACCCGTCCTGTCCGCTAGCTTAGATTCTATGGTAAGAGGGTCTACTTTCCAGGGGAGAGGTTTTGCTCTTTAGAACCAGTGCCttttaaaaaaagttatttttCAAGTCCTTGCATACCACTAAGTAATGCTCCTCCTGACCTGTTGGTCAACTCACTAGCAGGGGAGCGGAGGGCCTCCCCACGTTAATTATACACAGTATGTATTGTAATGCAATCTGAGCTTTGCTGCATGTAACCTAGGCTTTGAGGGCTGTCGACAACTAGCCGCAAGAAACAACTTCAAAGTTAATTTTACTTAGGAGAAAGCATCAGCTAGTCCGTATTGACTGAAATCAGTCCCCACCCCCCGGGGGTAGTCGGAGCACCTCATGGCACTGTAACATGACCCTACAGATATGTGTGCAGAGAagtccatcctcccctcaaatAAGGTCTGGATTGAACACCTGTACAGAGATGCTTGAATATCCCACATAAACAGAAGCTAGCATGACTTTAAAGTACCACCACACCAGGACGTGACAAGTTAAAACAGGTGTCGCATGATGATTAGGGGAGCATGGtctacagtagctacagtagGTTTGTATGAGTTGACACAATCCTCTTTTTAGAATGAGAATGCCAATGTATTTTTCACAAGGCTGGAGCTACTGGGGTATGtgggggactgactgactggtggatCCTGCCTCGAGATCCTGTCAGGGTTGACTGGCCTGCGGATTTCCAGTCTGACTGCATTCTGAGGAGCCACATGAGTGTTTTTCAGTGCCTTCTCTTTCCTGGTAACCTGTGCGACTTTAGCGTTCCCTTCCCCGAGAGCCGAGCAGAGACTGGACCGGTTGCTCAATGCCAACACGCCACAGCCAGTCAACTTTGACACCTCTGTCATGTTACACAAAGTTCAACACTCCCAGCACTCACTCACCCAGCCATAAAGAATGTCAGGGGGAAATGATGCTTGACAAATTAAGAGTGTTTTTTTCAAGGTACACTTTGCCATAGCGTTCCGCAAAACATACCTGGTTGAAACCCCAGTTAGAATTTGATCATCCATAGATGAGATCTCTTCAGCCTGGTGGTTGATTGTAATTTCATTTGAGGAAGGAAACTCCCAGTGTGCTTTGCCTGATTTTTCAGGAACTGGTTTATCAATTCTCAGTTTGTTCTGGCTTGGCGCTATTTGACAAGAAGGCAAGACCTGAATTattttttttgagagagagagagacttctgtTGGCTGCCACACaattctctctccctacctgtcGCACAGCTAAAATGACGTGCTCTGCACTGTGTTACGTTAACAGTAACGTTTGGAGGGTGTGCTACAGAGTTGGAAATTACTTTTGCATTCGGACATGATTTCTTGTCTTCtgtcttttttaaattttttatattGCACTGCTGAGAACAATAAAATGCATCGGGGTTGCTGAAGTCACTGGTCAACCTAGGCTGCGTTTTTCTTTCACTGTTTTGTCATTTGACTTGATTTACGTAATGGAACACCACTGGAGCTATAGCATGCCTGAGACTGGCGCTGGAATATACTGTATTCGGGCTCCTCTCGTTCTTTAGCTTTTTAACCACCTATTTCCATTACACTTTTTACTTGTGTCCACCATGGCTCCAACATTACACCACTCTAATATGCTTGATCTCTATTTTCTGTATTGCTTGGACTAGGTTAGACATTTCACTTGCATGGAAGTGGAAATGTCAATTTAAGTTTACTCTTTTGTATCCTATGATGTTGACCATTTGTCTAGCGGGAGCCCGATGAGCCTTTCTCTACTGATTCTTCACAGCGTTCCTATTTCTCCTGGTTTGTGTCTGTCGTTCTTCTGCCTGTGTCCATAAACCGGTCTGTCCAACCAAACAGGGATCAACTTTCCAAATGTCCATCAGCAATGTCACATGACAGGTTTAAAGGGTTGCATgcaacctggtgtgtgtgtgatgctagcGATAACATGTATTCCACAAtgccaatgaaaaaaatattaGCTGGTTCGATTGACCGAGCCCTCTGCTGGCCAAGTCGTCCATGTTAACAGAGCTTCTACTGTGGTAGGAAAATGACTTTACGTTCAAGCAGACAGAAACCGGGCGGTGTTCATAAGCGGTGTCCCAGTATCACCCAATATTGTGACTGTTCAGGGGTGAAGCTCCAAGGAAATATGAGTTTGTCCCTTCAGGAGTATGTTTGACTACACAAAATGGAACTTATGACATTTGCCATTTTGTTACCATATTACCTTTTTTGCATAGGTGTATGTTTAAACAGTGTTTCCATGTCGCCAACCCATGAAAAGGACGGCAACTTTTAAGATTTCAGACATTTTACGCCAACCTAAATGCCAAGGAATTCTAGGACATCTAAACAAAGCATTTGCAAGACTATATGTCCAGCATAATGTTACAACCAACCCCCACCCCAAAGCAGAAGGCAAACTACATATCAAGATAAGCATGTAGACTGCTGTTTTGTGTACGCTGCTACTAAACCTAGATCACGCTACTACAAAACCTAATCTTGTCTTCTATTATGTCGGTGTCTGCATGAGTGAAACTATGGTCTCTGCAGCAGTTGCTCCACTATGGGAACAGCTTCTATCTGCTCAGTGTCTAACTCCTCTTTCTGGAAGTATCTAAAAATAACAATCCAGATTTCTATAAGAAAGCTCATTGTAATAATGCTTAAACGGAAAGTGATGTAGTGGATGTTTGATTAAAGTGAACACGAACAATGTTAATAAACTATTTTTGAGACGAGATTA

Function

symbol description
rhoc Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Involved in several processes, including apical junction assembly; positive regulation of lipase activity; and positive regulation of stress fiber assembly. Located in cleavage furrow. Biomarker of breast cancer and ovarian carcinoma.

NR:

description
PREDICTED: rho-related GTP-binding protein RhoA-D

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609267.2 True 4021 mRNA 0.45 5 41414403 41439948

Neighbor

gene id symbol gene type direction distance location
ppm1j LOC106582733 coding upstream 3091 41361189 ~ 41411312 (+)
si:ch211-105j21.9 LOC106582731 coding upstream 631186 40778742 ~ 40783217 (+)
LOC110527761 LOC106582730 coding upstream 636332 40768279 ~ 40778071 (+)
tspan2a LOC106582727 coding upstream 680819 40715927 ~ 40733584 (+)
ngfb LOC106582728 coding upstream 706554 40683006 ~ 40707849 (+)
st7l LOC106582738 coding downstream 45740 41485688 ~ 41503766 (+)
LOC118965381 NA coding downstream 77837 41517785 ~ 41519333 (+)
LOC118965355 LOC106582742 coding downstream 175636 41615584 ~ 41616729 (+)
LOC110527773 LOC106582742 coding downstream 221586 41661534 ~ 41728773 (+)
LOC110527774 LOC106582743 coding downstream 302613 41742561 ~ 41754877 (+)
G607805 NA non-coding upstream 99534 41312555 ~ 41314869 (+)
G607693 NA non-coding upstream 256642 41156692 ~ 41157761 (+)
G607679 NA non-coding upstream 269781 41144403 ~ 41144622 (+)
G607612 NA non-coding upstream 316765 41097375 ~ 41097638 (+)
G607605 NA non-coding upstream 321918 41092272 ~ 41092485 (+)
G607890 NA non-coding downstream 3594 41443542 ~ 41445386 (+)
G607891 NA non-coding downstream 5921 41445869 ~ 41446193 (+)
G607892 NA non-coding downstream 6348 41446296 ~ 41446571 (+)
G607908 NA non-coding downstream 28670 41468618 ~ 41468856 (+)
G607910 NA non-coding downstream 29148 41469096 ~ 41484386 (+)
G606977 NA other upstream 779964 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 973771 40438879 ~ 40457742 (+)
G606469 NA other upstream 1183178 40230885 ~ 40231225 (+)
G606464 LOC106582711 other upstream 1190232 40223027 ~ 40224171 (+)
G606452 LOC106582711 other upstream 1207506 40206569 ~ 40206897 (+)
G607904 NA other downstream 22876 41462824 ~ 41463169 (+)
G608390 LOC106582745 other downstream 387263 41827211 ~ 41830808 (+)
G609436 NA other downstream 1381008 42820956 ~ 42821245 (+)
G610436 NA other downstream 1970443 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 2144072 43584020 ~ 43584896 (+)

Expression


Co-expression Network