capza1a (LOC106582739)


Basic Information

Item Value
gene id capza1a
gene name LOC106582739
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41469566 ~ 41485470 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609272.2
catcttctcccactgccggccactgggcttcctctcatcgccatatttggtagtgagtggaacgCCAACCGGATGTTTGACATTTATACACCTGGTGAAATATCTGGCTCATTGTTTTGTCTATTGTGACACTGTGGAGATCCGCTTCATCACTGTCGCAGATCAGCCAAGATGGCACATTTCGAAGAACAGCTCACTGGGGAAGAGAAGGTCCGCATTGCGGCTAATTTCGTCGTCCATGCTCCACCTGGAGAATTCAATGAAGTCTTCAACGATGTGCGGATACTGCTCAACAATGACAATCTTCTCAGGGAGGGTGCAGCGCATGCCTTTGCCCAGTACAACATGGATCAGTTCACCCTTGCCAAACTTGAAGGGTATGATGATCAGGTACTGATCACCGAGCATGGAGACTTGGGCAACGGGCGTTTCTTTGACCCCCACAACAAGCAGTCATTCAAGTTTGACCACCTGAGGAAGGAGGCCAGTGACACCCAGCCCCACGAGGGAGAGGCGTCTCTCAGACCGTGGAGAGATGCGTGTGACAGTGCCCTGAGGGCCTACGTCAAGGAGCACTACCCCAGCGGCGTCTGCACTGTTTATGGGAAAACTATAGACGGCCAGCAAACCATAATTGCttgcattgaaggtcaccaattTCAACCAAAGAACTTCTGGAATGGCCGTTGCAGGTCTGAATGGAAGTTCAGTATATCCCAATCTACAGCTCAAGTCGTTGGAGTCCTCAAAATACAGGTACATTACTATGAGGATGGAAATGTGCAGCTTGTCAGCCACAAGGATGTCCAGGAATCCCTCACAGTGAATAATGAGACTCAGACTGCAAAGGAGTTTGTGAAAATCATTGAGGATGCAGAAAATGAATACCAGACGGCCATCAGTGAAAATTACCAGACCATGTCTGACACCACGTTCAAAGCCTTACGCCGACAGCTTCCTGTCACCCGCACCAAGATTGACTGGAACAAGATCCTCAGCTACAAGATTGGCAAGGAGATGCAGAATGCCTAGAGGACAGTGTGTcggtctgtttctgtgtgttactGCAAAGACAAATCGCTTGAACGGGTGAAATCAGAAAAAGAGAGGGTGGTCTCATAAAATTTGTGGTCTAATGTGTCTATTTAGTCTGTGTTGAAGAATGCCACGATTTGATGTCAGGAGTTAGTGTACTTCCTTCGCCACGTTACAAGGTGATGCCTTTTAAGAGGACATTTTGATGGGTTGTTCATCTCTGGCTCatttgcaacaacaaaaatataaaaaaagaaaatgcCTTTACTGACACTGAAAGTTTGGGTCATTGGGTCATCCCCCTCCTGCCCGCACACACTCACGCTTCAAATTGTAGTCATACCCCTCAGTTGGTTGTCTGGGTGCCACAGGTAGCAATCTGTTTAAGCCCTGTTTGTAACCCTACAAGCGCTGGGATTCAAACAAATGCAGATAAATGACCTGTGTTTTGTGGTTGATCTTTGGTTAAATGTGATTTCAGATTGAGCTGAGCTACCATCCGCTTCCTTGACGGCTTATTTGATCTCCGTTAATGTCCGGAGATATTGCCTTTTAACAGCATGCACACAGCGATAGGCTTTTAATCTGCGTTGGATTGAATTCCGACCTATATAATTTTGTATAGGTATTGGCAAATATTTTTGTAACCCAAGGTCTCTTCTGAGTGCGGTGTATACTCCATTTAATATGACAAAAATATAGTGCACCTCCCCACCCCAAAGAAAAGACCCAAGTAACAGTTCTGTTCCATCTTTCCCGTGGTAAAGATATGTACTTTGAACTGTTTGGGGGAAAAAATGGAATTCATCACACCGAATGAATCTTCATTTCACACACGAGGCAGGCCTACGTGCTCGGCTCTGGTTTAATCAAGCCTAAACAAGTACAGTACCTACAGTACCATCAGTATCCTCTATCAGTAATTAGGCTACGTTAATATATAATACCTATATTCCCTTTACCTCCTTTTTAGCTTTTtactcatatttttttttatacaaaatgTCAAACATGTATAACAAAAGGAATGAAGAAGTTGCACCAAATGCAGTGCTGTAACTACTGTGATCATTAACTGTTAACCAAACTGTTTCCCATACCAGTGTGTAGAAATATTCTGATTGGGAAAAATTCTAATCAGAATTGGTGCCAAATGTGTAAATTCTGAATAACACTGAAAATACAGTAAAGGGACAATTTGAATAAAGACACATTATTGTATATCAC

Function

NR:

description
F-actin-capping protein subunit alpha-1-like

GO: NA

KEGG:

id description
K10364 CAPZA; capping protein (actin filament) muscle Z-line, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609272.2 True 2262 mRNA 0.44 10 41469566 41485470

Neighbor

gene id symbol gene type direction distance location
mov10a LOC106582737 coding downstream 2236 41444950 ~ 41467330 (-)
LOC110527764 LOC106582736 coding downstream 120651 41156665 ~ 41348915 (-)
slc16a1a LOC106582732 coding downstream 653118 40804053 ~ 40816448 (-)
tshba tshb coding downstream 713347 40754249 ~ 40756219 (-)
slc25a55a LOC106582726 coding downstream 720303 40733892 ~ 40749263 (-)
wnt2ba LOC106582740 coding upstream 34758 41520228 ~ 41536290 (-)
cttnbp2nla LOC106582741 coding upstream 57437 41542907 ~ 41567433 (-)
rap1b LOC106582744 coding upstream 312600 41798070 ~ 41817887 (-)
LOC110527776 LOC106582745 coding upstream 336271 41821741 ~ 41834379 (-)
LOC110527777 LOC106582746 coding upstream 350208 41835678 ~ 41843620 (-)
G608128 NA non-coding downstream 25440 41443538 ~ 41444126 (-)
G608127 NA non-coding downstream 26912 41442419 ~ 41442654 (-)
G608069 rhoc non-coding downstream 29621 41414414 ~ 41439945 (-)
G607933 NA non-coding downstream 306488 41161261 ~ 41163078 (-)
G607650 NA non-coding downstream 345763 41123601 ~ 41123803 (-)
G608167 NA non-coding upstream 21379 41506849 ~ 41507049 (-)
G608242 NA non-coding upstream 23998 41509468 ~ 41509707 (-)
G608681 LOC106582742 non-coding upstream 130115 41615585 ~ 41616710 (-)
G608745 NA non-coding upstream 213201 41698671 ~ 41698883 (-)
G608748 NA non-coding upstream 214827 41700297 ~ 41700508 (-)
G607932 NA other downstream 306169 41161148 ~ 41163397 (-)
G606973 NA other downstream 839686 40629249 ~ 40629880 (-)
LOC110527741 LOC106582711 other downstream 1245399 40135298 ~ 40275270 (-)
G606135 NA other downstream 1628235 39838891 ~ 39841331 (-)
G608888 LOC106582750 other upstream 459101 41944571 ~ 41951244 (-)
G608900 NA other upstream 483099 41968569 ~ 42025704 (-)
G610047 NA other upstream 1350277 42835747 ~ 42836069 (-)
G610182 NA other upstream 1621657 43107127 ~ 43162969 (-)
G610190 NA other upstream 1627678 43113148 ~ 43116144 (-)

Expression


Co-expression Network