cttnbp2nla (LOC106582741)


Basic Information

Item Value
gene id cttnbp2nla
gene name LOC106582741
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41542907 ~ 41567433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609275.2
TTTGAATTCGGACTTGCCTATAGGCTGATGGACTTGTCACATTTGAACTAATTTCTTCCGTATCGGAAACTGAAGACGCAAGACAAGACAATCTTTAACAATTGGCAAAGTTGATGTTGGAGTTTACAAAGGCATTGAAAAGACATATGAAGGAGCCCCAGATGAACATGGAGAGCCTGAGCAAGCCAGAGCTGCTGATGCTCTTCAGTGTCCTGGAGGGAGAGCTGGAGGCTCGTGACCTGGTCATCGAGGCACTCAGGgcCCAGTGCAGAGACACATATGTGGAGAAGCGCTATGGGAAGTACAACCTGAGCGACCCGTTCCTGGCTCTGCAGAGGGACAGTGAGGCGTTGGGGGAGCAGAGCCCTGGGGTCCACCAGGCTTCAGCCTGCTCTAGCCCCCTGGCTGTGCTCAAGCAGGTGGTCACCCACTGCAGGAGGATGCAGGAGAAGATGCTCGCCCAGCTAGCTGCAGCCGATAGCAGTCACAAGAGGGTCATTGCAgatctggaggaggagagaagaaggcaTGCAGAGGACACCGCCGAGGGCGATGATGTCACTTGCATCCTGGAAAAGGAGAGGGAACGCCTCTTGCAACAGCTGGAGTTTGAGCGGGGCCAGGTGCGTCGTCTGGAGAAGGAACAGAAGAGGGTCCTGGAGCAGCTGGAGGAGGAGCGGGTGCAGCACAAGCAGCTCTCCTCTGCCCTGGCCAAGGAGTGCAAGTGGGCCAGCCAGCGGGCCCTGGAGGTGGACCACCGCCTGGATGAGGCAAACCGTAGGCTGGAGAAGGAGCAGGGAGAGATCTTGGCCCTGAGGGCTGAGctacagaaggagaggaggagggccctgCAGATGGAGGCCAGGGTGGAGGAGCGGCTGGCTGAGTTTGACACGGAGAAGGAGCAGCTTCGCTCTCGGCTCAAGAGGGAAGAGGCCCAGTGCTGCCTGTGGCAGGAGCAGGTGCAGGCGCTGAGGAGAGAGCttcaggaagagaggggagatgaggaggaggatgagaggagagactcTCCTGTGGATATCAGTGGAGGGTCACCACTACTACGACCACCACCAGTGGAGGGGGGTGAAGAGCCTAAAGTCAACGGTCACGACTGCCTCAGGGAGGACGCCCTTCCACACAGACTGGGCCTGGACAACCGGAGTGAGAACAGCAGCCCTGTCCTGCTGTCCCCTGCCCTCCTGAACCAGAGCCTGTCCCCCTGCAGCACGGGGtcctcctccctcacctcctccccgtgCTCCTCTCCTCAGCTGACCAAACGGCTGGCCCTGGCTACCAGTCCCAGCTACCAGTCCTCCTACCAGGCAGGCATCAACCAGCGCTTCCACGCTGCTCGCCACAAGTTCCAGGGCCACACTGATCCAGAGCCACAGCaggatggaagaggaggtggcAGCCTACCCCACTCCCCTAGAGACCTGTCCCCGTCCCCTGAGTGCATCCCCGTCCCTGTCCAAAGCCCGGCCAAGCATCTGGCCCGCAGCACCGTCACCCACGTCCTGTCCCGCTTCACAGTCCAGCAGGGGGCCAAACCTCCGCCACCCAACAGCTCTCCCTTCGGCACTGACTACCGTAACCTGGCCCTGACCCCCTCCTCCCCGGTCATCCCCAGGGCCTCTGGTGCTGCTCTCCCTCTGGGGGTCTGCTCCCCAACCATCCCCCGAGCAGACAGGGGCAACCCGCCTCCCATCCCCTCTAAGAAGCCTGGCCTGGCCCAGTCTCCAGCGCCATCCATCCCTGGTACCAGAGCCAGCCACTTTCCTGAGCTGTCAGGAAGCTGTGGTCTCACCAGCGGCCAGGAGAATGTTAAAGAGCTGGACATGGTGGTTTCCTCCGTCAGTTAGCCTAGCCTCCTACTGAGTGCTACTAGCGCTGTGCTCTTTTATACCGCTCACACGTTCGTGTGCTGAGGCACGCTGCAAAACACTGTCAAGttaactgtatttattttatttttgacatGCATTCTGCTTCATTCTTCTTGTAGCACAATAGATGTGTTTGTATTTATGCATTTTGGGTTTGTTGATAATTTAATATAAGGAGAATAAGCAGTAATTAAGAGTAATGGGCCAACATGCATGTTAGTTGCTGGGTACTTTTCAAAAGTTTGCTAAGAAAAGCATGTAATGTCATGGGACAATCAAATGTCGCTACTTATAATGCAGCTTTTGAATTTGAGCTTGGaaataagcatttctctaaaTCAAGATTGGGATTTAGCCTAATACCGAACAAAATAAGAGAGTTTGTCTTAAACTGCAGAGTTTAATACTGAACCAAGGCCGCTTACAAACACATTATTATAATGTTATATTTCCTAAAATGGCACATGATTATAACATTCCATATCTTCAAGGCTTAATAAGTTGGCAGTATTCTGTGTATATGCAGTATTCTGTGTATGTGCAGAATTCTGTGTATATGCAGTATTATTAATACTACTATGTATTATGTGTAGTGTAACTACTatgaaaatatattatatttgctCTCATACCAATCGTCTGGTCAAACATTTACAATGTATATTTTTACATGAGCACAATATATCTCTTTTACACCCGCATATTGGTttgtcatatacagttgaagtcggaagtttacatacacttaggttggagtcattcaaacttgtttttcaacctctccacaaatttcttgttaacaaactatagttttggca

Function

NR:

description
CTTNBP2 N-terminal-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609275.2 True 2710 mRNA 0.52 5 41542907 41567433

Neighbor

gene id symbol gene type direction distance location
wnt2ba LOC106582740 coding downstream 6617 41520228 ~ 41536290 (-)
capza1a LOC106582739 coding downstream 57437 41469566 ~ 41485470 (-)
mov10a LOC106582737 coding downstream 75577 41444950 ~ 41467330 (-)
LOC110527764 LOC106582736 coding downstream 193992 41156665 ~ 41348915 (-)
slc16a1a LOC106582732 coding downstream 726459 40804053 ~ 40816448 (-)
rap1b LOC106582744 coding upstream 230637 41798070 ~ 41817887 (-)
LOC110527776 LOC106582745 coding upstream 254308 41821741 ~ 41834379 (-)
LOC110527777 LOC106582746 coding upstream 268245 41835678 ~ 41843620 (-)
LOC110527778 LOC106582747 coding upstream 276903 41844336 ~ 41861084 (-)
LOC110527779 LOC106582748 coding upstream 287790 41855223 ~ 41873805 (-)
G608242 NA non-coding downstream 33200 41509468 ~ 41509707 (-)
G608167 NA non-coding downstream 35858 41506849 ~ 41507049 (-)
G608128 NA non-coding downstream 98781 41443538 ~ 41444126 (-)
G608127 NA non-coding downstream 100253 41442419 ~ 41442654 (-)
G608069 rhoc non-coding downstream 102962 41414414 ~ 41439945 (-)
G608681 LOC106582742 non-coding upstream 48152 41615585 ~ 41616710 (-)
G608745 NA non-coding upstream 131238 41698671 ~ 41698883 (-)
G608748 NA non-coding upstream 132864 41700297 ~ 41700508 (-)
G608782 NA non-coding upstream 251710 41819143 ~ 41821578 (-)
G607932 NA other downstream 379510 41161148 ~ 41163397 (-)
G606973 NA other downstream 913027 40629249 ~ 40629880 (-)
LOC110527741 LOC106582711 other downstream 1318740 40135298 ~ 40275270 (-)
G606135 NA other downstream 1701576 39838891 ~ 39841331 (-)
G608888 LOC106582750 other upstream 377138 41944571 ~ 41951244 (-)
G608900 NA other upstream 401136 41968569 ~ 42025704 (-)
G610047 NA other upstream 1268314 42835747 ~ 42836069 (-)
G610182 NA other upstream 1539694 43107127 ~ 43162969 (-)
G610190 NA other upstream 1545715 43113148 ~ 43116144 (-)

Expression


Co-expression Network