LOC118965355 (LOC106582742)


Basic Information

Item Value
gene id LOC118965355
gene name LOC106582742
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41615584 ~ 41616729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984430.1
GGTAATTTTAAGGCAAGCCGGAACACAGAGTGAGTCGCCATGGCGGCAGGAGTGGCTGCATGGCTTCCCTTTGCACGGGCAGCAGCTATTGGCTGGATGCCTGTGGCCAACTGCCCCATGCCCATTGCTCCTAGAGACCACAGAAAGAGACATGACGAGCTGATCATCCTGAACGTGAGTGGACGACGCTTCCAGACCTGGAGGACCACACTGGACCGCTACCCAGACACCCTGCTGGGAAGCTCAGAGAAACAGTTTTTTTACGATGAGGAGACAAAGGAGTATTTCTTCGACCGGGACCCAGACTCCTTCCGCAGCATTCTCAACTTCTACCGGACGGGAAAGTTGCACTATCCTCGCTACGAGTGCATCTCGGCCTATGACGAAGAGCTAACTTTCTTCGGCATCATTCCGGAGATCATCGGCGACTGCTGCTACGAAGAGTACAAGGACCGGAAGCGGGAGAACGCGGAGCGTCTCCAGGATGACCAGGATGACAACAAGGACTGCAAGCTGCCCAACATGACATACAGAGAGACCATGTGGAGGGCCTTTGAGAACCCTCACACCTCCACCATGGCCCTTGTGTTCTACTATGTCACCGGCTTCTTCATCGCCATCTCAGTCCTCACCAACGTGATAGAGACGGTACCTTGTGGTGCCACGCCTTCACAGAAGGATATGCCGTGTGGCGAGCGCTATACCATCGCCTTCTTCTGCATGGACACAGCCTGCGTCCTCATCTTCACCGTGGAGTACCTCATGAGACTGTTCGCCGCGCCCAGCCGCTACCAATTTATGCGCAGTGTGATGAGCATCATAGACGTGGTAGCCATCTTTCCCTACTACATCGGCCTGGTGATGACAGACAATGAGGATGTGAGCGGGGCCTTCGTCACGCTCAGAGTGTTCCGTGTGTTCCGCATCTTCAAGTTCTCCCGCCACTCGCAGGGCCTCAGGATCCTGGGGTACACGCTGAAGAGCTGCGCCTCCGAGCTgggcttcctcctcttctccctcaccATGGCCATCATCATCTTTGCCACGGTCATGTTCTACGCAGAGAAGGGGTCGTCGTCGACCAAGTTCACCAGCATTCCAGCCTCCTTCTGGTACACCATTGTCACAATGACCACGTTGGGGTAA

Function

NR:

description
potassium voltage-gated channel subfamily D member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984430.1 True 1146 mRNA 0.55 1 41615584 41616729

Neighbor

gene id symbol gene type direction distance location
LOC118965381 NA coding upstream 96279 41517785 ~ 41519333 (+)
st7l LOC106582738 coding upstream 111818 41485688 ~ 41503766 (+)
rhoca rhoc coding upstream 175636 41414403 ~ 41439948 (+)
ppm1j LOC106582733 coding upstream 204272 41361189 ~ 41411312 (+)
si:ch211-105j21.9 LOC106582731 coding upstream 832367 40778742 ~ 40783217 (+)
LOC110527773 LOC106582742 coding downstream 44805 41661534 ~ 41728773 (+)
LOC110527774 LOC106582743 coding downstream 125832 41742561 ~ 41754877 (+)
LOC110527781 LOC106582750 coding downstream 327808 41944537 ~ 41956332 (+)
LOC110527782 LOC106582752 coding downstream 384194 42000923 ~ 42059047 (+)
LOC110527783 LOC106582753 coding downstream 443599 42060328 ~ 42225672 (+)
G608175 NA non-coding upstream 103542 41511802 ~ 41512042 (+)
G608174 NA non-coding upstream 104032 41511326 ~ 41511552 (+)
G608170 NA non-coding upstream 106411 41508897 ~ 41509173 (+)
G608169 NA non-coding upstream 106932 41508453 ~ 41508652 (+)
G608315 NA non-coding downstream 9988 41626717 ~ 41626949 (+)
G608316 NA non-coding downstream 10574 41627303 ~ 41627621 (+)
G608371 NA non-coding downstream 79473 41696202 ~ 41696405 (+)
G608383 NA non-coding downstream 99119 41715848 ~ 41716087 (+)
G608389 NA non-coding downstream 191424 41808153 ~ 41817714 (+)
G607904 NA other upstream 152415 41462824 ~ 41463169 (+)
G606977 NA other upstream 981145 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 1174952 40438879 ~ 40457742 (+)
G606469 NA other upstream 1384359 40230885 ~ 40231225 (+)
G606464 LOC106582711 other upstream 1391413 40223027 ~ 40224171 (+)
G608390 LOC106582745 other downstream 210482 41827211 ~ 41830808 (+)
G609436 NA other downstream 1204227 42820956 ~ 42821245 (+)
G610436 NA other downstream 1793662 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 1967291 43584020 ~ 43584896 (+)
G610622 NA other downstream 2212275 43829004 ~ 43831880 (+)

Expression


Co-expression Network