LOC110527773 (LOC106582742)


Basic Information

Item Value
gene id LOC110527773
gene name LOC106582742
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41661534 ~ 41728773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983255.1
tcagcagcctgatgacctagaggccggagagggagtatacgtgacaggtATGAAGACCAAAACATTCAACGTTGTGAGATGATACCTCCTCCACTGTTTCATCCACTAAAGGTTTTACTGTTACAATTTCACACACGAGCGTTCACCATATTTGGACTATCACAGAGAAGTGTTACGGGGACATGGTGCCCAAGACGATCGCGGGGAAGATCTTTGGTTCTATCTGTTCTCTGAGCGGGGTGCTGGTAATCGCCCTGCCTGTTCCCGTCATCGTGTCCAACTTTAGCCGAATCTATCACCAGAACCAGAGAGCTGACAAACGGCGTGCGCAGAAGGTACAGAAAGCCAGACTGGCCCGGATAAGAATAGCCCAGACGGGCAGCTCCTGCACGGGCTTCCTCCAGAGCAAACGCAACGACCTCCTCAACGAACTGCTGGAGCTCACGGGATCAGAGGAAGAGGAACAGCAGCTCAACAAGGGCATGTCGTTATTAGAGAGCCAACACCACCACCTATTGCACTGTCTGGAGAAGACCACTGCCCATGAGTTTGTGGATGAGCAGCTGTATGAGCAGAACTGCCTGGAGACCACGATCCAGAGCTACACCTCCCACAGCCCCTCCTTCTCCAGCCAGGACGGGCCCATAGGCACCTGCTGTACCCGCCGGGGGAAGATGAACTCCCCACTACCCAACTCCAGCCTGCCCCTCCAGCCCAGCCATCAGCAGGGCTCACTACAGGAGCTCAGCGCCCTGCACATCCAGTGTGGGGATAAGCTGCCCCATACCACCAGtcgcTCCAGTCTCAACATGAAGACAGACGATGTGGGCCTGATCAACTGCAAGGGCAGTCAGATCACCACGGCGATCATCAGCATCCCCACGGCCCCCTCCGACACCACTGACGGGGGCGGTCTCCACGGACCCCCCCAGCGcagaccccccccaccccccaccggCCCACAGGCCCCCAGCATCAATACCACCGCCAGCTCCAATGTCATTAAAGTATCTGCTCTGTGACTGTGTGACGAACCCAATcgacagactgactgagcaggaggagaggtgaaggggACTTTCACTTGAACTCTGCCTTGAAGGACCCTGTCGCCTGTTTAGAGGAAGAGAAATGGGAGGGAACTCCCATTTTCCAAGGAATGTACTTGGCCTTTTGAGAAGCCAGGGGATAGGCTACTGTATACTGAGAGAAATGTTGAAACGCAAGTCAGCTGATGGTAGGCTACTGTGTGCCCATTTCCCAAAAACGGGCCAGTATGTTTGAATTGCGGGAATCGACAGGACAAAGGAAGTCACTGTGTCTTTGTGCACTTCGCACCTACTCTTTATTTTCTTGATCTGGCTACAGCTCAACCCTAAATGTGTAAAAGATATTCTTCTTACACTTACAAGGTTCAAAGGAGGATGAAGACAACGATCAATGTTTTAACTCGAGTTTGGTTGGTCTTCTTTGCGTTTTCTGTTTGTCGTATCTAGTTTCACCTTGATTGATACAGTTTTGGAGTTTTTTCACTTCTCCAGTGGACGAGGTGTGTCGGTTAATATGATTGTGGTgatttttttgtttgtgtatgtatgtacgtgtgtgATGATACTTTTATGAAATGTTAATACTTTTGTGGGTTTTTAAACCTGATTAGATTTTCATCCGTCCACAATGCCCTTAAAGAGCGACTGCCCCTAAAAAGCCATTTCTCATTTTGAAAATGGCCTATAATGGGATCGATATGAGTCAGACATTTATTATACTGTCAAAATCGACAACAAAATGTGAATAGGATAATTTGGGTCATAAATTTAGTCTCATCCAGATTTGTGAGATGTcaggaaaaaaaatgtatgttctgGAATGAAGGGTACCGTAACAGTTTTCCTTGGGTTTGGTAATGCCCATGGTCAGTTTAGTTTGACATTCgatatccctatggggctagttagggaccacAACATTCTAAAGGTGAATAGCTCCAAATTTCAATAAATTAAAAACTTCAAACCAattataaattgtagaaattaattaatatacaaatattgaaagcatttaacGAGAGAACTAAAACATGggcaacatgaaaatattgtcccatttaTATTGTGTATTTCATTGACGGTACCTAACCATCCCCAGAGATAGGCTATCAAAAGTCAAACCAACTTTGCCACAGTCGCACACTAGTCTGCTGAAACTAATTACCTAAATAATTTGTGTAACTCTTCCCACCTGCGAACACACACAAGCGACACCCACAACAAACCACACCCTGAAACCAACTCACGTTTGAATTCAGCCATGgccgctagcatttcttaatgaaccaAATCTAAAACCAGGCCAAAGCAGGAAGTTCAGTCGCCCTTTAAAATCAAAGGAACATAAATGACTACTCAGACAAATATTTTATGGGCTAACTATTTTTTTGCTAGAATATTTTATCAGACACACTACAGTACCATTGCTGTtactcggtctctgtctctcccttgctctctcactttctcccatgctctctatctctgtctttctctctctcccaaaaTGTCCTAATTTTTAAGACTTTAGAATAGCAGTTTAGTCGTTGTTTTTTCAGCTCAGTGGAAGACAGTAGAATCACCATGGTCCCATGCAACCATGGATGtcattagctagg

Function

NR:

description
potassium voltage-gated channel subfamily D member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983255.1 True 2671 mRNA 0.46 6 41661534 41728773

Neighbor

gene id symbol gene type direction distance location
LOC118965355 LOC106582742 coding upstream 44805 41615584 ~ 41616729 (+)
LOC118965381 NA coding upstream 142229 41517785 ~ 41519333 (+)
st7l LOC106582738 coding upstream 157768 41485688 ~ 41503766 (+)
rhoca rhoc coding upstream 221586 41414403 ~ 41439948 (+)
ppm1j LOC106582733 coding upstream 250222 41361189 ~ 41411312 (+)
LOC110527774 LOC106582743 coding downstream 13788 41742561 ~ 41754877 (+)
LOC110527781 LOC106582750 coding downstream 215764 41944537 ~ 41956332 (+)
LOC110527782 LOC106582752 coding downstream 272150 42000923 ~ 42059047 (+)
LOC110527783 LOC106582753 coding downstream 331555 42060328 ~ 42225672 (+)
LOC110527785 LOC106582755 coding downstream 498035 42226808 ~ 42232599 (+)
G608316 NA non-coding upstream 33913 41627303 ~ 41627621 (+)
G608315 NA non-coding upstream 34585 41626717 ~ 41626949 (+)
G608175 NA non-coding upstream 149492 41511802 ~ 41512042 (+)
G608174 NA non-coding upstream 149982 41511326 ~ 41511552 (+)
G608389 NA non-coding downstream 79380 41808153 ~ 41817714 (+)
G608456 NA non-coding downstream 115601 41844374 ~ 41846862 (+)
G608446 NA non-coding downstream 146436 41875209 ~ 41877230 (+)
G609098 NA non-coding downstream 535663 42264436 ~ 42264667 (+)
G609099 NA non-coding downstream 536508 42265281 ~ 42265618 (+)
G607904 NA other upstream 198365 41462824 ~ 41463169 (+)
G606977 NA other upstream 1027095 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 1220902 40438879 ~ 40457742 (+)
G606469 NA other upstream 1430309 40230885 ~ 40231225 (+)
G606464 LOC106582711 other upstream 1437363 40223027 ~ 40224171 (+)
G608390 LOC106582745 other downstream 98438 41827211 ~ 41830808 (+)
G609436 NA other downstream 1092183 42820956 ~ 42821245 (+)
G610436 NA other downstream 1681618 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 1855247 43584020 ~ 43584896 (+)
G610622 NA other downstream 2100231 43829004 ~ 43831880 (+)

Expression


Co-expression Network