LOC110527774 (LOC106582743)


Basic Information

Item Value
gene id LOC110527774
gene name LOC106582743
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41742561 ~ 41754877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609277.2
GCAATTGCTAGTTCGTTCAAATGTGTATTTTCTCTAGTCTAAAACACTGTCAACGCCTAACTACTTTATATTTCAAATTAAATGTAGATTGAGTTATTTTAATACCACATGGCCATAACTCATAAAGTCCATTGCAAATATATTCTCTTTTTTTTTCATTACAGCTATAACGTCAGCACAGTGCCAAGGAAAAATAAACATCGCAATCTCATTGGAGGAAATTGAGTGGTCAACGTAAGCGCTCCCCGTGAATGAGAAGAAGAATAGGTTACAAAGCAGGGGATGACAAGTCAGAGATATCGACAGGCAATCGTGCAAACCTAAATAATCTTTAGGACTAAACAATCAATCATATTTGGAGTAAATATACCCAACACAGAGCGACAGATTCGAGAGTTTGTGCTTTTGGAATCCCACGTCCAAAACTAGACGAGGGCGCGCATTCCAGAACAAGCTTGGCGTTTTTAGCTTGTTCCATCATCATGACGCTGACAATTGAATAGCTTAGACTATGTGACTTTTGTGATAGGCATGCTTGAAATAATGAGCaagtattttatttgaaaaagCCTACTTACGTTTACAAAAATGGAACGACAGCTTTACATGTCAGAGCGCAAAAATATGGATACTTGCTTGAGACGTCTGAAGCAGGAACTGGTGTCTATGAAGGAGGCAGGAGATGGCCTCCATGCTCAGATGAACTCCATGATGGGGGCTCTTCAGGAACTCAAGCTTCTACAAGTGCAGACAGTGCTGGAGCAACTAGACATCTCAGGGAGGCCAATCCAAAGGGCGGCCCCACCACCAACAGCAGACACATGTGGCCCTTGCCCTATTCCCAGCCTCAAGCCTACTCACAGGCCCCCCTTGGACTGGACAACTGGTCgggaggagcagcagcagcagagccgGGTGGGGCACCGGAGCAGCCTGGgcacctctccttcctcctccagccTGGAGACATTGGAGACTGAGAGTGAgagccatcctctccctctcccccgcaGAGTGTCAGGATACACGGCCCCACAGGTGGAGTACTGTGGCCCACGTCTTAGCCAAGTGTTTCCAGAGCAGCATCAGCAGCCGGCTCACCCAGCCCAGGTGGTGGATCTGCCTGGCATCCTCTACAGCCTATCCAGGGAAGGCCCCTCGCTGGACAGCGACTACTCCCAGGACAGCATGGACGACTCCAGCGACTGGACCTCCTCGCTCATGAGCCGCAGCCGCAACCGGCAGCCCCTGGTCCTAGGGGACAACGTTTTCGCCGACCTGGTGGGCAACTGGCTGGACTTGCCTGAGCTGGAGAAGGAGGAGATGATTGGGGGTGTTTGTGTGGGGGCAGATGGAGCCGACAGGCCCGACTCCCCAGCCCACCCTCTCCGTCTCAGCCGCTCCCAGGAGATCTGCAGGAAGTTCTCTCTGACCACCAACATCTTCAAGAGGTTCCTGCGCAGTGTGAGGCCCGACAGGGACAAGCTCCTGAAGGAGAGACCAGGCTGGATGGTCCCCGAGAGCCAGGAGGCCAAACTCTTCAAGAGGCCCAAGAAAGTGGCCAAGCAGCAGGCCAAGGGAAGCTTCTACTTCCCGTTCTGGGCAGGTGTAGGACAGCAGCAGCAGGGTAAGGGCCGGCCATGTCCTAAGCTGGCTgaggagagacagagccagagccagagccagttCTCAGAGATTTACATAGACAGGAGACAAGAGTGGAGACAGGAGGCCAGAGTGGAGAAAATGCAGCCCTTGTTTGACTACAACACGGCTGTGTGGGTCTGATGCTGACGCTGCTCCAGGGTGGTGGCAGGTGTTGGGGATTTGGCTGGGAGCTCTGGgaggtttgtgtgtctgtctgtctccactcaGAGAATGGACTGACTGAGGAATGAACATCCACACTATTTCCCAACAGAGAGATTATCAGGGCAACTGTTTGTCTGACAATCCTAAGACCTAAGACCTGTGACTGAGAGAGTAAGCAGGACTTCCTCTTATAGATGGGTTCACCAAAAAAATTGTTAGGATTCGAATGAGTCCGTAAGTGCCCTGGACTTATACGATAGACGATACTTCGATATAGACATGATGCTCAGATAATGCTCTGAATTCCATCGTCATGGTTCACACCTCAACTCTTGTTTCATTATGTTTGAATGCTGCTGTAGGTCCCACCCAAGTGTATCCCCACCCTCATGTCTCATCTCGTACTTCTATCTAGCAATAGAACACAGCTGTTACACGTACTGCATGGGCTCTAGTAAATGTTTTATCTGTGACGTTGTGAAACAGTTGTCACTGAACTGCCACTAAACATGACCACAGGTGCTTCTTCGCCTCGTTGCCCAGAGTCAGACAGCCGGATGAATACAGAAGGGTCTAATATTGTCACATCAACCTCACTCAGGGATCGGGATGTGGCctgtgtgactgactgggtttGAACCTGGATCTCCTGTGCGCCACAAGACTGTTCTAGCCCGCCGATGTAAAGCCTAGGCGTTAGCTTGGGGAGCTAGcacaagtcttcaggtctcaggcaaggttactcatcacatATCCTTGGTCTCTGAACCACCTCCGTTACACCTTCACCGTTCACCagccacctacacacacaaagCCACTCCAGGATAGGGTTATCTCTTGCCTTGTAGACATGATGGCACATCTTGACTCTACAGCCAATCCTCCTGGCTAGCGTATTAcacatggcagagagagagagagcgagagctgtGTGCCATCTGGTTGCCTACAGTTACATAAGGACaagccagcagcacagacaagAGGTGCAGTCATTCAGCGTAGGCTGTCAAGCGTTTTCCCAATCAACCCTAAACTGCGATGCGGCCGTTGCATATGTGTGTAATATGTATCTAATGCTAAGCAGGGCCTGGAGATTTCAAGATAGCAGAGGACTGAGGAGGAGAATGTTTACAGTGAATCCTTccacatgtacatacagtactaTACCTAATGAAGTCAGCCATATGTTTTCTCTTTGCGCCTAGAACCACAGGAGAACATGTTAATGAGCATGTTAATGATGTCAACAAAGTCTATTAGCCATTGTGTTCATTTCATTTAAAGGGTCTTAAAGAGAGGAAGATTGAACCCAGTAGATATGTGGTTGGTCCTAGCTCTCTTTATGAAAGAAATTGAGGCGTTTCGGGGAGATTTCACAGAGCAGTATGGCGCAACCTTTACCGTCATTTCCCAGAGCTGAGCTCCACATCATTTCCTCAGTGAAATCACTGAAGTGACGAGGACTATTGATCTTATTTTAGAAGACATGGTATGCAAATGCAATCCTCAGCCCTCAGTAATAAGAGTGGCTCGAGGAGTTGATTTGATGTGAAACATCACCCCATCCATGCATTCGACAGACATGAATTTGATTTGACGTgaatttgatttgttaaatatCGCTATGCACATATGGCGGGTTTTTCAATATTCAGGTGGGATTATGTTCAGTTGGTCACACGTGGACGGACCGCCTCTACGAAGCCTGTTATGCTAGAAGagcctctctgcctgtcttctTCATATTTACAACTGTAATTGTCATTTTTAGCGCTGTTGTTAAAACTGTGGTTCTGCGAACCTCAAAGTGTTACTGGGTGTAAAACTGTCACTGACTCTTTGTAAATTAAACTGTTTTCTGAAAAAA
>XM_021609278.2
GGCTGTTTGAAAGGTGAGAGTGGAGAGTAGAGACGGACTGACAGAGCAGccaagagagaggaacagacttgTGTAGAAGTTATAACAAGGTGTCTATGAAGGAGGCAGGAGATGGCCTCCATGCTCAGATGAACTCCATGATGGGGGCTCTTCAGGAACTCAAGCTTCTACAAGTGCAGACAGTGCTGGAGCAACTAGACATCTCAGGGAGGCCAATCCAAAGGGCGGCCCCACCACCAACAGCAGACACATGTGGCCCTTGCCCTATTCCCAGCCTCAAGCCTACTCACAGGCCCCCCTTGGACTGGACAACTGGTCgggaggagcagcagcagcagagccgGGTGGGGCACCGGAGCAGCCTGGgcacctctccttcctcctccagccTGGAGACATTGGAGACTGAGAGTGAgagccatcctctccctctcccccgcaGAGTGTCAGGATACACGGCCCCACAGGTGGAGTACTGTGGCCCACGTCTTAGCCAAGTGTTTCCAGAGCAGCATCAGCAGCCGGCTCACCCAGCCCAGGTGGTGGATCTGCCTGGCATCCTCTACAGCCTATCCAGGGAAGGCCCCTCGCTGGACAGCGACTACTCCCAGGACAGCATGGACGACTCCAGCGACTGGACCTCCTCGCTCATGAGCCGCAGCCGCAACCGGCAGCCCCTGGTCCTAGGGGACAACGTTTTCGCCGACCTGGTGGGCAACTGGCTGGACTTGCCTGAGCTGGAGAAGGAGGAGATGATTGGGGGTGTTTGTGTGGGGGCAGATGGAGCCGACAGGCCCGACTCCCCAGCCCACCCTCTCCGTCTCAGCCGCTCCCAGGAGATCTGCAGGAAGTTCTCTCTGACCACCAACATCTTCAAGAGGTTCCTGCGCAGTGTGAGGCCCGACAGGGACAAGCTCCTGAAGGAGAGACCAGGCTGGATGGTCCCCGAGAGCCAGGAGGCCAAACTCTTCAAGAGGCCCAAGAAAGTGGCCAAGCAGCAGGCCAAGGGAAGCTTCTACTTCCCGTTCTGGGCAGGTGTAGGACAGCAGCAGCAGGGTAAGGGCCGGCCATGTCCTAAGCTGGCTgaggagagacagagccagagccagagccagttCTCAGAGATTTACATAGACAGGAGACAAGAGTGGAGACAGGAGGCCAGAGTGGAGAAAATGCAGCCCTTGTTTGACTACAACACGGCTGTGTGGGTCTGATGCTGACGCTGCTCCAGGGTGGTGGCAGGTGTTGGGGATTTGGCTGGGAGCTCTGGgaggtttgtgtgtctgtctgtctccactcaGAGAATGGACTGACTGAGGAATGAACATCCACACTATTTCCCAACAGAGAGATTATCAGGGCAACTGTTTGTCTGACAATCCTAAGACCTAAGACCTGTGACTGAGAGAGTAAGCAGGACTTCCTCTTATAGATGGGTTCACCAAAAAAATTGTTAGGATTCGAATGAGTCCGTAAGTGCCCTGGACTTATACGATAGACGATACTTCGATATAGACATGATGCTCAGATAATGCTCTGAATTCCATCGTCATGGTTCACACCTCAACTCTTGTTTCATTATGTTTGAATGCTGCTGTAGGTCCCACCCAAGTGTATCCCCACCCTCATGTCTCATCTCGTACTTCTATCTAGCAATAGAACACAGCTGTTACACGTACTGCATGGGCTCTAGTAAATGTTTTATCTGTGACGTTGTGAAACAGTTGTCACTGAACTGCCACTAAACATGACCACAGGTGCTTCTTCGCCTCGTTGCCCAGAGTCAGACAGCCGGATGAATACAGAAGGGTCTAATATTGTCACATCAACCTCACTCAGGGATCGGGATGTGGCctgtgtgactgactgggtttGAACCTGGATCTCCTGTGCGCCACAAGACTGTTCTAGCCCGCCGATGTAAAGCCTAGGCGTTAGCTTGGGGAGCTAGcacaagtcttcaggtctcaggcaaggttactcatcacatATCCTTGGTCTCTGAACCACCTCCGTTACACCTTCACCGTTCACCagccacctacacacacaaagCCACTCCAGGATAGGGTTATCTCTTGCCTTGTAGACATGATGGCACATCTTGACTCTACAGCCAATCCTCCTGGCTAGCGTATTAcacatggcagagagagagagagcgagagctgtGTGCCATCTGGTTGCCTACAGTTACATAAGGACaagccagcagcacagacaagAGGTGCAGTCATTCAGCGTAGGCTGTCAAGCGTTTTCCCAATCAACCCTAAACTGCGATGCGGCCGTTGCATATGTGTGTAATATGTATCTAATGCTAAGCAGGGCCTGGAGATTTCAAGATAGCAGAGGACTGAGGAGGAGAATGTTTACAGTGAATCCTTccacatgtacatacagtactaTACCTAATGAAGTCAGCCATATGTTTTCTCTTTGCGCCTAGAACCACAGGAGAACATGTTAATGAGCATGTTAATGATGTCAACAAAGTCTATTAGCCATTGTGTTCATTTCATTTAAAGGGTCTTAAAGAGAGGAAGATTGAACCCAGTAGATATGTGGTTGGTCCTAGCTCTCTTTATGAAAGAAATTGAGGCGTTTCGGGGAGATTTCACAGAGCAGTATGGCGCAACCTTTACCGTCATTTCCCAGAGCTGAGCTCCACATCATTTCCTCAGTGAAATCACTGAAGTGACGAGGACTATTGATCTTATTTTAGAAGACATGGTATGCAAATGCAATCCTCAGCCCTCAGTAATAAGAGTGGCTCGAGGAGTTGATTTGATGTGAAACATCACCCCATCCATGCATTCGACAGACATGAATTTGATTTGACGTgaatttgatttgttaaatatCGCTATGCACATATGGCGGGTTTTTCAATATTCAGGTGGGATTATGTTCAGTTGGTCACACGTGGACGGACCGCCTCTACGAAGCCTGTTATGCTAGAAGagcctctctgcctgtcttctTCATATTTACAACTGTAATTGTCATTTTTAGCGCTGTTGTTAAAACTGTGGTTCTGCGAACCTCAAAGTGTTACTGGGTGTAAAACTGTCACTGACTCTTTGTAAATTAAACTGTTTTCTGAAAAAA
>XM_036983257.1
TTTGAAAGGTGAGAGTGGAGAGTAGAGACGGACTGACAGAGCAGccaagagagaggaacagacttgTGTAGAAGTTATAACAAGGAGGAGCATTCGCATCGGTGTATTCTTAATTCCCGAAGACACATCTGTCATATCAACAGCCAAGTTCAAAGTGTCTATGAAGGAGGCAGGAGATGGCCTCCATGCTCAGATGAACTCCATGATGGGGGCTCTTCAGGAACTCAAGCTTCTACAAGTGCAGACAGTGCTGGAGCAACTAGACATCTCAGGGAGGCCAATCCAAAGGGCGGCCCCACCACCAACAGCAGACACATGTGGCCCTTGCCCTATTCCCAGCCTCAAGCCTACTCACAGGCCCCCCTTGGACTGGACAACTGGTCgggaggagcagcagcagcagagccgGGTGGGGCACCGGAGCAGCCTGGgcacctctccttcctcctccagccTGGAGACATTGGAGACTGAGAGTGAgagccatcctctccctctcccccgcaGAGTGTCAGGATACACGGCCCCACAGGTGGAGTACTGTGGCCCACGTCTTAGCCAAGTGTTTCCAGAGCAGCATCAGCAGCCGGCTCACCCAGCCCAGGTGGTGGATCTGCCTGGCATCCTCTACAGCCTATCCAGGGAAGGCCCCTCGCTGGACAGCGACTACTCCCAGGACAGCATGGACGACTCCAGCGACTGGACCTCCTCGCTCATGAGCCGCAGCCGCAACCGGCAGCCCCTGGTCCTAGGGGACAACGTTTTCGCCGACCTGGTGGGCAACTGGCTGGACTTGCCTGAGCTGGAGAAGGAGGAGATGATTGGGGGTGTTTGTGTGGGGGCAGATGGAGCCGACAGGCCCGACTCCCCAGCCCACCCTCTCCGTCTCAGCCGCTCCCAGGAGATCTGCAGGAAGTTCTCTCTGACCACCAACATCTTCAAGAGGTTCCTGCGCAGTGTGAGGCCCGACAGGGACAAGCTCCTGAAGGAGAGACCAGGCTGGATGGTCCCCGAGAGCCAGGAGGCCAAACTCTTCAAGAGGCCCAAGAAAGTGGCCAAGCAGCAGGCCAAGGGAAGCTTCTACTTCCCGTTCTGGGCAGGTGTAGGACAGCAGCAGCAGGGTAAGGGCCGGCCATGTCCTAAGCTGGCTgaggagagacagagccagagccagagccagttCTCAGAGATTTACATAGACAGGAGACAAGAGTGGAGACAGGAGGCCAGAGTGGAGAAAATGCAGCCCTTGTTTGACTACAACACGGCTGTGTGGGTCTGATGCTGACGCTGCTCCAGGGTGGTGGCAGGTGTTGGGGATTTGGCTGGGAGCTCTGGgaggtttgtgtgtctgtctgtctccactcaGAGAATGGACTGACTGAGGAATGAACATCCACACTATTTCCCAACAGAGAGATTATCAGGGCAACTGTTTGTCTGACAATCCTAAGACCTAAGACCTGTGACTGAGAGAGTAAGCAGGACTTCCTCTTATAGATGGGTTCACCAAAAAAATTGTTAGGATTCGAATGAGTCCGTAAGTGCCCTGGACTTATACGATAGACGATACTTCGATATAGACATGATGCTCAGATAATGCTCTGAATTCCATCGTCATGGTTCACACCTCAACTCTTGTTTCATTATGTTTGAATGCTGCTGTAGGTCCCACCCAAGTGTATCCCCACCCTCATGTCTCATCTCGTACTTCTATCTAGCAATAGAACACAGCTGTTACACGTACTGCATGGGCTCTAGTAAATGTTTTATCTGTGACGTTGTGAAACAGTTGTCACTGAACTGCCACTAAACATGACCACAGGTGCTTCTTCGCCTCGTTGCCCAGAGTCAGACAGCCGGATGAATACAGAAGGGTCTAATATTGTCACATCAACCTCACTCAGGGATCGGGATGTGGCctgtgtgactgactgggtttGAACCTGGATCTCCTGTGCGCCACAAGACTGTTCTAGCCCGCCGATGTAAAGCCTAGGCGTTAGCTTGGGGAGCTAGcacaagtcttcaggtctcaggcaaggttactcatcacatATCCTTGGTCTCTGAACCACCTCCGTTACACCTTCACCGTTCACCagccacctacacacacaaagCCACTCCAGGATAGGGTTATCTCTTGCCTTGTAGACATGATGGCACATCTTGACTCTACAGCCAATCCTCCTGGCTAGCGTATTAcacatggcagagagagagagagcgagagctgtGTGCCATCTGGTTGCCTACAGTTACATAAGGACaagccagcagcacagacaagAGGTGCAGTCATTCAGCGTAGGCTGTCAAGCGTTTTCCCAATCAACCCTAAACTGCGATGCGGCCGTTGCATATGTGTGTAATATGTATCTAATGCTAAGCAGGGCCTGGAGATTTCAAGATAGCAGAGGACTGAGGAGGAGAATGTTTACAGTGAATCCTTccacatgtacatacagtactaTACCTAATGAAGTCAGCCATATGTTTTCTCTTTGCGCCTAGAACCACAGGAGAACATGTTAATGAGCATGTTAATGATGTCAACAAAGTCTATTAGCCATTGTGTTCATTTCATTTAAAGGGTCTTAAAGAGAGGAAGATTGAACCCAGTAGATATGTGGTTGGTCCTAGCTCTCTTTATGAAAGAAATTGAGGCGTTTCGGGGAGATTTCACAGAGCAGTATGGCGCAACCTTTACCGTCATTTCCCAGAGCTGAGCTCCACATCATTTCCTCAGTGAAATCACTGAAGTGACGAGGACTATTGATCTTATTTTAGAAGACATGGTATGCAAATGCAATCCTCAGCCCTCAGTAATAAGAGTGGCTCGAGGAGTTGATTTGATGTGAAACATCACCCCATCCATGCATTCGACAGACATGAATTTGATTTGACGTgaatttgatttgttaaatatCGCTATGCACATATGGCGGGTTTTTCAATATTCAGGTGGGATTATGTTCAGTTGGTCACACGTGGACGGACCGCCTCTACGAAGCCTGTTATGCTAGAAGagcctctctgcctgtcttctTCATATTTACAACTGTAATTGTCATTTTTAGCGCTGTTGTTAAAACTGTGGTTCTGCGAACCTCAAAGTGTTACTGGGTGTAAAACTGTCACTGACTCTTTGTAAATTAAACTGTTTTCTGAAAAAA

Function

NR:

description
PAK4-inhibitor INKA2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609277.2 False 3685 mRNA 0.49 2 41742561 41754877
XM_021609278.2 False 3114 mRNA 0.51 2 41750593 41754877
XM_036983257.1 True 3179 mRNA 0.50 3 41750598 41754877

Neighbor

gene id symbol gene type direction distance location
LOC110527773 LOC106582742 coding upstream 13788 41661534 ~ 41728773 (+)
LOC118965355 LOC106582742 coding upstream 125832 41615584 ~ 41616729 (+)
LOC118965381 NA coding upstream 223256 41517785 ~ 41519333 (+)
st7l LOC106582738 coding upstream 238795 41485688 ~ 41503766 (+)
rhoca rhoc coding upstream 302613 41414403 ~ 41439948 (+)
LOC110527781 LOC106582750 coding downstream 189660 41944537 ~ 41956332 (+)
LOC110527782 LOC106582752 coding downstream 246046 42000923 ~ 42059047 (+)
LOC110527783 LOC106582753 coding downstream 305451 42060328 ~ 42225672 (+)
LOC110527785 LOC106582755 coding downstream 471931 42226808 ~ 42232599 (+)
mst1ra LOC106582756 coding downstream 608753 42363630 ~ 42384059 (+)
G608383 NA non-coding upstream 26474 41715848 ~ 41716087 (+)
G608371 NA non-coding upstream 46156 41696202 ~ 41696405 (+)
G608316 NA non-coding upstream 114940 41627303 ~ 41627621 (+)
G608315 NA non-coding upstream 115612 41626717 ~ 41626949 (+)
G608389 NA non-coding downstream 53276 41808153 ~ 41817714 (+)
G608456 NA non-coding downstream 89497 41844374 ~ 41846862 (+)
G608446 NA non-coding downstream 120332 41875209 ~ 41877230 (+)
G609098 NA non-coding downstream 509559 42264436 ~ 42264667 (+)
G609099 NA non-coding downstream 510404 42265281 ~ 42265618 (+)
G607904 NA other upstream 279392 41462824 ~ 41463169 (+)
G606977 NA other upstream 1108122 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 1301929 40438879 ~ 40457742 (+)
G606469 NA other upstream 1511336 40230885 ~ 40231225 (+)
G606464 LOC106582711 other upstream 1518390 40223027 ~ 40224171 (+)
G608390 LOC106582745 other downstream 72334 41827211 ~ 41830808 (+)
G609436 NA other downstream 1066079 42820956 ~ 42821245 (+)
G610436 NA other downstream 1655514 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 1829143 43584020 ~ 43584896 (+)
G610622 NA other downstream 2074127 43829004 ~ 43831880 (+)

Expression


Co-expression Network