LOC110527782 (LOC106582752)


Basic Information

Item Value
gene id LOC110527782
gene name LOC106582752
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42000923 ~ 42059047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609287.2
aAGCATATGGTGAGTGTACAAttgtgtgtatgttttgtgtgcacgtgtgtgtatgtgtgttcgtgTTACAGGCAGAACATGAAAGCAAAGTGATGAGCGAAATGAGAGCCAATTTTCCGTAGTCCACCGTCGGTATCATTTTCTCACCGGGCGCAGAGAGTGGGAAGCATGAACGAACAGTATCTAGGGAAGGAGGCGGAACTTAAACGAGCCCCACAGCTCAGCCATACAGTAGACCATGTACAAATGCAGTTAATATCTCAATCGACAATTTTCTGTTAGGCTACTACGAGAGATAATTGAGTGCGCGCGTTTACCGAAGAGCGTATACAGAGAAGAGACCTAGGAGTCAAGAAACAGAAGAGGAAAGTATCGAGATAAAGTAAATGTCTCATTAATCGCGGAATTCATTCGAAACCAGCGTGGCACTCGACTCAACTGatacagtatctgagggagcagactgagaggaccACACCCAGTGAACAGACACCACACGAGCCAAACAGACTTCCGGGATAACTGCTGACTAGAGTATGGAGCCGGCACAATCAGAGATGAGCATCTTGGGATGCTCGACCAATGGGAAAGGTCACAACCTAGGAGATGACAAGTATGTGCCTATGAAGACCTTGCCAGAGGAATTAGACACAAATGGTACTCAAAATGGCAGGTTTGATGATCCCGATGGCATCCTGGAGAGTGAGGAGTTTCTGCCCAACGGAGATGGGACGAAGCCCATGCGCTTCACAGACTTTGAGGGAAAGACATCTTTCGGCATGTCTGTGTTCAACCTGGGGAATGCTATCATGGGCAGTGGAATCCTGGGACTGGCTTATGCCATGGCCAACACTGGCATACTCCTCTTCCTGTTTCTTCTGACTGTTGTGGCGGTCCTCTCCTGCTATTCCATTCACCTGCTGCTCAAATCCTCTGGCATTGTGGGAATCCGAGCCTATGAACAGCTTGGCTACAGGGCCTTTGGTACCCCAGGCAAGATGGCCGCTGgcatcgccatcacactgcagaACATCGGAGCCATGTCCAGCTACCTGTACATCGTCAAGTCTGAGTTCCCATTGGTCATCCAGGCCTTCAGTAGGGCGGACCCCACCGCTGATTTGTGGTACTTGAATGGGAACTACTTGGTGGTCATGGTCTCTATTGGCGTTATCCTACCATTGGCCCTAATGAAGCAGCTCGGCTACCTGGGCTACACCAGTGGTTTCTCCCTTAGCTGCATGGTCTTCTTCCTCAGTGCGGTGATCTATAAGAAGTTTCAGATCCCCTGTCCCTTCGAGGAGTTCTCAGCAGCCAATCACACAGTGTCTCACCTCAACATTCACCTAAACATCACTGACAACCATGCTACCCATGATAATGGTCTGGTACATGAGATGGATGACTCCCACTGCGGTGCCCGTATGTTCACCATGAACTCTCAGACCGCGTACACCATCCCCATCCTGGCCTTTGCCTTTGTGTGTCATCCTGAGGTTCTGCCTATCTACACTGAGCTCCGCAAcCCTACTCAGAGGAGGATGCAGCACGTCTCCAACCTCTCGATCCTGGTGATGTACACCATGTACTTCCTGGCTGCTCTCTTCGGCTACCTGACCTTTTACGGTAAGACTGAGACAGAGCTGCTGCACACATACAGCAGGATCGACCCTTATGACACGCTGATCCTGTGCGTGCGATTGGCTGTCCTCACCGCTGTCACACTGACCGTCCCCATTGTGCTCTTCCCAGTGCGGAGGGCTCTGAATCAGATGTTCTTCGCCAGTAAGTCGTTTAACTGGCTTCGTCACGTGGCCATTGCCGTCACTCTACTCTCCTTCATCAACATGTTGGTCATCTTCGCCCCCAACATCCTGGGAATCTTCGGCGTTATCGgtGCCACATCTGCCCCGTGTCTGATCTTCATCTTCCCTGCTATCTTCTACATCCGCATTGTGCCTAAGGAGCAGGAACCCATGCACTCCATCCCCAAGATACTGGCCGCCTGTTTCGCTGGTCTGGGGGTCGCCTTCATGATCATGAGTTTGAGCTTCATCATCATTGATTGGACAACGGGGAGCAGCAACTCTGGCGGTGGCCACTAGAGGCTGCCCTCTGCACTGAGCAGGCCGGGGTCGGCAAGGGGCTGGCAGGGGCTTTGAGGGGATgcctaggagtgtgtgtgtgttttttagaACTGTTTCATGTAATTGATGCACTATCCCCTCTGTGGTAGAGCAAAGGTTAGAGGTTAAGGGACAAAGATGATTGGGGTAGGGAGGGGAAGACAGAATCAACTTGCTGGGCAAAACCATACTGAGCATTTCAGTCTTCTTGAGACTAAAGACTCCGAAAAAACAGTCTGTACTACAGTAATGCAGTATGTAGACCTGCACAGAGGAGGGCTTTTttggtatttttttaaatcattatcATGTGTATTATTTATGAGTGGGATAGTGCATCCTAGTCAATCCATAATGGAAAATCCTGAAGAAACTCATGATGGCTTCCcttcctttcccccctccctcccttcatccatcctcccatccttATTTATCTATTTTCCATCTGCCTGTTTCTTTCCCTCCGACGCCTTAATTCATGTCAACTGCAGCTAGTACTGTACAGAAGAAGCACAGATGGAGATATGGTTGAATCGCTATGtaaaggaaggaaaggaaagcACATGTTCTATACATTACATGTCATTTGGCATCTTTGTATGAGAAAATCTGACATTTTGTCAATAGAAGAAATAGCTACATCTATAGATTAGGTGAGTGCTGTAAAACAAAGAGTCTGTGGCTGTCTTTGTATCCTGTCTATCACTTTGTGCCAGTAGCACTCAACTTAACCATCAAAGGGTAGTAGGCGTTTCCTAATATTCTATTGGCACGAGCACACAAAGATACAGTATATGTTTTCTCACAAGAGTGCATTTAGCCTGAGCTGTTTTATGTGCCAAAGCTAAGGTTGAATGTGGTTTGTGGTTGTTGGGCTTAGTCCCATGATGCATTATGGTGTTTAACTCTTGCTGCATCCctggtacatacagtacactcagATAATGGAGGCGTGGCGTTCAACCAACCACACACATAGCCTTTTCGTTGAAACAGTaatgtatatttatttaactagctatatccatgttttttttaaatttcacaaGTGAGCTAATGGACCTCAGAACAAAGTATTTAACTATATGATCAGGTATCTTGATAGACCTTATAGATGGTATGCGCAGTCTATATTCGATGATTTTGCATATTGGAGGGTTTTGATGACAGTTGAATGTGTAGGAGGTGAGCTATAGGGCACTGAGCTGATTAAGAAGAAAAAACATATAGAGCCTTTTACATTCATGTTAGTTAGATGATCAACTGACATCCTAGATACAGAATTGACTGATTTTTATGATCAATTGTGTTTTAAATTAAGATCAACAACTTAAACTAGCCTTTTTAACACTAATAGCACATATTTCACTCATACTTATATTTCTACAATTCATTTGTAAACCCTCGTTTAAATTCAGTACAGTTCAGGTGAACCCTTTCAGTTACTACGAATGGTTAAGCTTACTGTTTTTGGCATGACAAAATATGTAGGAAACGTGTTTTAGTTATGTGTTAGTTGTGACATACGGTCCGTCCATGTTGTTGAACTACTCTATATTGTATTTTAATATCTCTTTTCCACTTGTTTTGTGATTGATCTTGTGGTTGGAAGTTTTAGTGAAGGAAAGCTGATGTGTCACCTGTCCAGTCTGTCTGGTGATTGGCTGATTTAATTCATTAATTTACCGTAACTACTGTGATATTCAATCCATAATACGTTGATGTTTGGGCTCTATTTCCAAAACGTATCTGGTCTCTAACAGTGAGCTCTTGTGATCAAGTACAGTTTGACAATTAAGTGAATTGTGATTGTTAGATTTAGTTTGATTCGATAGCCCAATGCCCCTTCTTAAGGCTTCTCAATTGTGTAGTGCAACATTCAACACTGTGACGTCGTATCTCTCAAAAAACATAAATAGCATTGTAATAACATTGTTACCAATATATCCTGGCAAGTCCTACGTAATGTATGTAAGACGATTGTTCCTTTCTTATTTTATTCTAAAACACTGTAGCCGGTGTTGCTTTCTCTTGTGTACATTAATTGAtttgtaatttgtaatcaatagAATGTTATTGAGCTGTTTCTTTTACTCATCAACGGCTAAAAGGTTATTGCATGTATCTGACTCAACCCTATATTTCTCCTGGTCTTGCTGAGGCAGTGGTTGTGGTAAAAATGAATGCCTGGTCAAGACCAGTCAAGGAGGCAACAGTTTGCCATAGACTGGGATTAGGCCTCTTCTGTCTGGGATTGTGTCTACATATCTAGCTACTACCTAACTGTTTCTCTCTGAGAGGCCTTGCTCTTCAACTTTAGAGCTTTGCTACCCCTATTATAATGTCAGAGGCGACATTCTCAACATTTTGCCTCTTTCTCTTATACCCAAACTATGCCAGCCAGttaacctgttgttgtagctcttGTTTTACCTTTGCAATTTATTTCTAAGGAAATTAAAGGACTGAGTGAATAACAAGTTATATATGAATTTTGGGCTTATAAAGCGGCTTATATAAATAATGTATATAAATGTAAACCCTTTATATTCTTGATGCATATCTAGCTTGTATAGTGTAAATAGCTGGGACAGTTTTAGTCTGACAATTAAAAAACAATTGTAGAAGTTTTTA
>XM_021609288.2
aAGCATATGGTGAGTGTACAAttgtgtgtatgttttgtgtgcacgtgtgtgtatgtgtgttcgtgTTACAGGCAGAACATGAAAGCAAAGTGATGAGCGAAATGAGAGCCAATTTTCCGTAGTCCACCGTCGGTATCATTTTCTCACCGGGCGCAGAGAGTGGGAAGCATGAACGAACAGTATCTAGGGAAGGAGGCGGAACTTAAACGAGCCCCACAGCTCAGCCATACAGTAGACCATGTACAAATGCAGTTAATATCTCAATCGACAATTTTCTGTTAGGCTACTACGAGAGATAATTGAGTGCGCGCGTTTACCGAAGAGCGTATACAGAGAAGAGACCTAGGAGTCAAGAAACAGAAGAGGAAAGTATCGAGATAAAGTAAATGTCTCATTAATCGCGGAATTCATTCGAAACCAGCGTGGCACTCGACTCAACTGatacagtatctgagggagcagactgagaggaccACACCCAGTGAACAGACACCACACGAGCCAAACAGACTTCCGGGATAACTGCTGACTAGAGTATGGAGCCGGCACAATCAGAGATGAGCATCTTGGGATGCTCGACCAATGGGAAAGGTCACAACCTAGGAGATGACAAGTATGTGCCTATGAAGACCTTGCCAGAGGAATTAGACACGTTTGATGATCCCGATGGCATCCTGGAGAGTGAGGAGTTTCTGCCCAACGGAGATGGGACGAAGCCCATGCGCTTCACAGACTTTGAGGGAAAGACATCTTTCGGCATGTCTGTGTTCAACCTGGGGAATGCTATCATGGGCAGTGGAATCCTGGGACTGGCTTATGCCATGGCCAACACTGGCATACTCCTCTTCCTGTTTCTTCTGACTGTTGTGGCGGTCCTCTCCTGCTATTCCATTCACCTGCTGCTCAAATCCTCTGGCATTGTGGGAATCCGAGCCTATGAACAGCTTGGCTACAGGGCCTTTGGTACCCCAGGCAAGATGGCCGCTGgcatcgccatcacactgcagaACATCGGAGCCATGTCCAGCTACCTGTACATCGTCAAGTCTGAGTTCCCATTGGTCATCCAGGCCTTCAGTAGGGCGGACCCCACCGCTGATTTGTGGTACTTGAATGGGAACTACTTGGTGGTCATGGTCTCTATTGGCGTTATCCTACCATTGGCCCTAATGAAGCAGCTCGGCTACCTGGGCTACACCAGTGGTTTCTCCCTTAGCTGCATGGTCTTCTTCCTCAGTGCGGTGATCTATAAGAAGTTTCAGATCCCCTGTCCCTTCGAGGAGTTCTCAGCAGCCAATCACACAGTGTCTCACCTCAACATTCACCTAAACATCACTGACAACCATGCTACCCATGATAATGGTCTGGTACATGAGATGGATGACTCCCACTGCGGTGCCCGTATGTTCACCATGAACTCTCAGACCGCGTACACCATCCCCATCCTGGCCTTTGCCTTTGTGTGTCATCCTGAGGTTCTGCCTATCTACACTGAGCTCCGCAAcCCTACTCAGAGGAGGATGCAGCACGTCTCCAACCTCTCGATCCTGGTGATGTACACCATGTACTTCCTGGCTGCTCTCTTCGGCTACCTGACCTTTTACGGTAAGACTGAGACAGAGCTGCTGCACACATACAGCAGGATCGACCCTTATGACACGCTGATCCTGTGCGTGCGATTGGCTGTCCTCACCGCTGTCACACTGACCGTCCCCATTGTGCTCTTCCCAGTGCGGAGGGCTCTGAATCAGATGTTCTTCGCCAGTAAGTCGTTTAACTGGCTTCGTCACGTGGCCATTGCCGTCACTCTACTCTCCTTCATCAACATGTTGGTCATCTTCGCCCCCAACATCCTGGGAATCTTCGGCGTTATCGgtGCCACATCTGCCCCGTGTCTGATCTTCATCTTCCCTGCTATCTTCTACATCCGCATTGTGCCTAAGGAGCAGGAACCCATGCACTCCATCCCCAAGATACTGGCCGCCTGTTTCGCTGGTCTGGGGGTCGCCTTCATGATCATGAGTTTGAGCTTCATCATCATTGATTGGACAACGGGGAGCAGCAACTCTGGCGGTGGCCACTAGAGGCTGCCCTCTGCACTGAGCAGGCCGGGGTCGGCAAGGGGCTGGCAGGGGCTTTGAGGGGATgcctaggagtgtgtgtgtgttttttagaACTGTTTCATGTAATTGATGCACTATCCCCTCTGTGGTAGAGCAAAGGTTAGAGGTTAAGGGACAAAGATGATTGGGGTAGGGAGGGGAAGACAGAATCAACTTGCTGGGCAAAACCATACTGAGCATTTCAGTCTTCTTGAGACTAAAGACTCCGAAAAAACAGTCTGTACTACAGTAATGCAGTATGTAGACCTGCACAGAGGAGGGCTTTTttggtatttttttaaatcattatcATGTGTATTATTTATGAGTGGGATAGTGCATCCTAGTCAATCCATAATGGAAAATCCTGAAGAAACTCATGATGGCTTCCcttcctttcccccctccctcccttcatccatcctcccatccttATTTATCTATTTTCCATCTGCCTGTTTCTTTCCCTCCGACGCCTTAATTCATGTCAACTGCAGCTAGTACTGTACAGAAGAAGCACAGATGGAGATATGGTTGAATCGCTATGtaaaggaaggaaaggaaagcACATGTTCTATACATTACATGTCATTTGGCATCTTTGTATGAGAAAATCTGACATTTTGTCAATAGAAGAAATAGCTACATCTATAGATTAGGTGAGTGCTGTAAAACAAAGAGTCTGTGGCTGTCTTTGTATCCTGTCTATCACTTTGTGCCAGTAGCACTCAACTTAACCATCAAAGGGTAGTAGGCGTTTCCTAATATTCTATTGGCACGAGCACACAAAGATACAGTATATGTTTTCTCACAAGAGTGCATTTAGCCTGAGCTGTTTTATGTGCCAAAGCTAAGGTTGAATGTGGTTTGTGGTTGTTGGGCTTAGTCCCATGATGCATTATGGTGTTTAACTCTTGCTGCATCCctggtacatacagtacactcagATAATGGAGGCGTGGCGTTCAACCAACCACACACATAGCCTTTTCGTTGAAACAGTaatgtatatttatttaactagctatatccatgttttttttaaatttcacaaGTGAGCTAATGGACCTCAGAACAAAGTATTTAACTATATGATCAGGTATCTTGATAGACCTTATAGATGGTATGCGCAGTCTATATTCGATGATTTTGCATATTGGAGGGTTTTGATGACAGTTGAATGTGTAGGAGGTGAGCTATAGGGCACTGAGCTGATTAAGAAGAAAAAACATATAGAGCCTTTTACATTCATGTTAGTTAGATGATCAACTGACATCCTAGATACAGAATTGACTGATTTTTATGATCAATTGTGTTTTAAATTAAGATCAACAACTTAAACTAGCCTTTTTAACACTAATAGCACATATTTCACTCATACTTATATTTCTACAATTCATTTGTAAACCCTCGTTTAAATTCAGTACAGTTCAGGTGAACCCTTTCAGTTACTACGAATGGTTAAGCTTACTGTTTTTGGCATGACAAAATATGTAGGAAACGTGTTTTAGTTATGTGTTAGTTGTGACATACGGTCCGTCCATGTTGTTGAACTACTCTATATTGTATTTTAATATCTCTTTTCCACTTGTTTTGTGATTGATCTTGTGGTTGGAAGTTTTAGTGAAGGAAAGCTGATGTGTCACCTGTCCAGTCTGTCTGGTGATTGGCTGATTTAATTCATTAATTTACCGTAACTACTGTGATATTCAATCCATAATACGTTGATGTTTGGGCTCTATTTCCAAAACGTATCTGGTCTCTAACAGTGAGCTCTTGTGATCAAGTACAGTTTGACAATTAAGTGAATTGTGATTGTTAGATTTAGTTTGATTCGATAGCCCAATGCCCCTTCTTAAGGCTTCTCAATTGTGTAGTGCAACATTCAACACTGTGACGTCGTATCTCTCAAAAAACATAAATAGCATTGTAATAACATTGTTACCAATATATCCTGGCAAGTCCTACGTAATGTATGTAAGACGATTGTTCCTTTCTTATTTTATTCTAAAACACTGTAGCCGGTGTTGCTTTCTCTTGTGTACATTAATTGAtttgtaatttgtaatcaatagAATGTTATTGAGCTGTTTCTTTTACTCATCAACGGCTAAAAGGTTATTGCATGTATCTGACTCAACCCTATATTTCTCCTGGTCTTGCTGAGGCAGTGGTTGTGGTAAAAATGAATGCCTGGTCAAGACCAGTCAAGGAGGCAACAGTTTGCCATAGACTGGGATTAGGCCTCTTCTGTCTGGGATTGTGTCTACATATCTAGCTACTACCTAACTGTTTCTCTCTGAGAGGCCTTGCTCTTCAACTTTAGAGCTTTGCTACCCCTATTATAATGTCAGAGGCGACATTCTCAACATTTTGCCTCTTTCTCTTATACCCAAACTATGCCAGCCAGttaacctgttgttgtagctcttGTTTTACCTTTGCAATTTATTTCTAAGGAAATTAAAGGACTGAGTGAATAACAAGTTATATATGAATTTTGGGCTTATAAAGCGGCTTATATAAATAATGTATATAAATGTAAACCCTTTATATTCTTGATGCATATCTAGCTTGTATAGTGTAAATAGCTGGGACAGTTTTAGTCTGACAATTAAAAAACAATTGTAGAAGTTTTTA

Function

NR:

description
sodium-coupled neutral amino acid transporter 3-like isoform X2

GO: NA

KEGG:

id description
K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609287.2 False 4763 mRNA 0.44 17 42000923 42059047
XM_021609288.2 True 4742 mRNA 0.44 16 42000923 42059047

Neighbor

gene id symbol gene type direction distance location
LOC110527781 LOC106582750 coding upstream 44591 41944537 ~ 41956332 (+)
LOC110527774 LOC106582743 coding upstream 246046 41742561 ~ 41754877 (+)
LOC110527773 LOC106582742 coding upstream 272150 41661534 ~ 41728773 (+)
LOC118965355 LOC106582742 coding upstream 384194 41615584 ~ 41616729 (+)
LOC118965381 NA coding upstream 481618 41517785 ~ 41519333 (+)
LOC110527783 LOC106582753 coding downstream 1281 42060328 ~ 42225672 (+)
LOC110527785 LOC106582755 coding downstream 167761 42226808 ~ 42232599 (+)
mst1ra LOC106582756 coding downstream 304583 42363630 ~ 42384059 (+)
camkva LOC106582757 coding downstream 402920 42461967 ~ 42500915 (+)
LOC110527788 LOC106582758 coding downstream 454049 42513096 ~ 42530382 (+)
G608446 NA non-coding upstream 123693 41875209 ~ 41877230 (+)
G608456 NA non-coding upstream 154061 41844374 ~ 41846862 (+)
G608389 NA non-coding upstream 183209 41808153 ~ 41817714 (+)
G608383 NA non-coding upstream 284836 41715848 ~ 41716087 (+)
G608371 NA non-coding upstream 304518 41696202 ~ 41696405 (+)
G609098 NA non-coding downstream 205389 42264436 ~ 42264667 (+)
G609099 NA non-coding downstream 206234 42265281 ~ 42265618 (+)
G609108 NA non-coding downstream 214770 42273817 ~ 42274036 (+)
G609113 NA non-coding downstream 216779 42275826 ~ 42276063 (+)
G609223 NA non-coding downstream 371473 42430520 ~ 42430738 (+)
G608390 LOC106582745 other upstream 170115 41827211 ~ 41830808 (+)
G607904 NA other upstream 537754 41462824 ~ 41463169 (+)
G606977 NA other upstream 1366484 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 1560291 40438879 ~ 40457742 (+)
G606469 NA other upstream 1769698 40230885 ~ 40231225 (+)
G609436 NA other downstream 761909 42820956 ~ 42821245 (+)
G610436 NA other downstream 1351344 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 1524973 43584020 ~ 43584896 (+)
G610622 NA other downstream 1769957 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 1943577 44002556 ~ 44035143 (+)

Expression


Co-expression Network