LOC110527785 (LOC106582755)


Basic Information

Item Value
gene id LOC110527785
gene name LOC106582755
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42226808 ~ 42232599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609290.2
CGCGCAGTTGACTGGCTGCGTGGTAAGAGACTGCGCTCACAAAGTACACGACCGGCCCTACAAACACATGCACTCTACTTTCTGAGGGGCGTTGAGTGGACATCGGATTTACTGAGAAAGTTGCAACCGCTTTGGATTAATTGTTCCATCAGAGGAGTCAATTATTCACCGATGATAAagtaatccatttggaattcataCAATCAGACACGACGAGAGCAATGCTGTGTCTGCGGGACTCTGGAGACTGTTTGGTGGACCAGATGCAGTACATGATGAGGTCCTTGCAGGATCTGAAACACATGAGAAGGCCGCTCAGCGAGCCATCCGGCCGTCCCGACGCAGTGACGCGCGTTTGCCAGCGGGGAACGCAGCAGCGGGAGCGCCTGACATGCCTCCGTAGACCCATCTCTGAGGCCAGCGAGGCCAGCACCTATGACTCAGCTTGCTGCCTGGCCAGCCCcgtggaggaggaagaagaggtggaggaggatgggCAGGAGCGGCTAATGCAGAGCTCCCCTAGCAGTGAGAAGAGTATGGAGTTTGACTCAGGCTACTCAGAGGCGTCCTGGCAGGATGACGGCGTGGTGCTCAGGAGGACCAGGAATGTACGGGTGTCTAACTCTGCCTGCCTCCGAACCAACCGGGGAGTGGGCTCTGCCGACCGGATCCGGCCCAAGTCCACGTCGGACGCTTGTCTGGAGCGCTGGACGTCATTTGAGGCAAGCAGCGACCCGGAGGACTGGACCACGTCACTGCTGAGCCGCAGCAGGAACAGACAGCCCCTGGTGCTGGGGGACAACAGCTTCGCTGACCTCATTAAGAACTGGATGGACTTGCCAGAGTGTCCTGAACCAGCAGAACTCAAGCCCCACGCAGGCCGGCGCCTGGCCAAGGACCTCCTGGTCAACATGAGGAGGAAGCTGGCGGGGATGTCAAAAAGCGTGGAGATGAGGGCCAGACCAGCAGACTCCACCAGGGTCAGTAGAGCCGCGGCATCCCCGAAACGCATGTCCTGCCCTGTAGGCTTACAGCCACGCAAACCCTTCTTTCACCAATCCCACACAGGCCTGCATGAACTGGGGACGGACTTCTACCAGTTCAACGCTCTCATGAAGACAGGCAGCCGACAACCTATCATATGTAATGACATTATCGGGTACATCTGATCTGAGTGATGTTACAGCTACGGACTCCTACCACAGactaatgttattttattttttatatgcgCTTTATGTGGAAATAATGTTGAAATTGTTACaataataaagtttttttttattgaaaaggGAAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609290.2 True 1302 mRNA 0.54 3 42226808 42232599

Neighbor

gene id symbol gene type direction distance location
LOC110527783 LOC106582753 coding upstream 1136 42060328 ~ 42225672 (+)
LOC110527782 LOC106582752 coding upstream 167761 42000923 ~ 42059047 (+)
LOC110527781 LOC106582750 coding upstream 270476 41944537 ~ 41956332 (+)
LOC110527774 LOC106582743 coding upstream 471931 41742561 ~ 41754877 (+)
LOC110527773 LOC106582742 coding upstream 498035 41661534 ~ 41728773 (+)
mst1ra LOC106582756 coding downstream 131031 42363630 ~ 42384059 (+)
camkva LOC106582757 coding downstream 229368 42461967 ~ 42500915 (+)
LOC110527788 LOC106582758 coding downstream 280497 42513096 ~ 42530382 (+)
LOC110527789 LOC106565988 coding downstream 452546 42685145 ~ 42759404 (+)
gnat1 LOC106582761 coding downstream 527787 42760386 ~ 42767396 (+)
G608446 NA non-coding upstream 349578 41875209 ~ 41877230 (+)
G608456 NA non-coding upstream 379946 41844374 ~ 41846862 (+)
G608389 NA non-coding upstream 409094 41808153 ~ 41817714 (+)
G608383 NA non-coding upstream 510721 41715848 ~ 41716087 (+)
G608371 NA non-coding upstream 530403 41696202 ~ 41696405 (+)
G609098 NA non-coding downstream 31837 42264436 ~ 42264667 (+)
G609099 NA non-coding downstream 32682 42265281 ~ 42265618 (+)
G609108 NA non-coding downstream 41218 42273817 ~ 42274036 (+)
G609113 NA non-coding downstream 43227 42275826 ~ 42276063 (+)
G609223 NA non-coding downstream 197921 42430520 ~ 42430738 (+)
G608390 LOC106582745 other upstream 396000 41827211 ~ 41830808 (+)
G607904 NA other upstream 763639 41462824 ~ 41463169 (+)
G606977 NA other upstream 1592369 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 1786176 40438879 ~ 40457742 (+)
G606469 NA other upstream 1995583 40230885 ~ 40231225 (+)
G609436 NA other downstream 588357 42820956 ~ 42821245 (+)
G610436 NA other downstream 1177792 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 1351421 43584020 ~ 43584896 (+)
G610622 NA other downstream 1596405 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 1770025 44002556 ~ 44035143 (+)

Expression


Co-expression Network