gnat1 (LOC106582761)


Basic Information

Item Value
gene id gnat1
gene name LOC106582761
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42760386 ~ 42767396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609306.2
AATCTTCCCTAAGACTCGAAAACACGCCATCATTCGCCTCTCCCGCGTTCCTTGGAAGCAGTTGACGTGCCAGCTGCGTATTTGACGGTGCCAGTCGGCCCTCTAGACGATCAGCTAGGACCCGTTTTCCCCCCGTCGTTTGGTTTTGAGCACTACAGGGCCGAAGCCGGCGTGTGAGGATGGGGGCCGGAGCGAGTGCAGAGGACAAGCACTCCAAAGAGCTGGAGAAGAAACTCAAGGAGGATGCAGAGAAGGACGCCAGGACAGTCAAGCTGCTGCTGCTGGGTGCTGGAGAATCAGGAAAGAGCACAATCGTCAAACAGATGAAAATTATCCATCAAGATGGTTACTCTCTTGAAGAGTCCATGGAGTTTGTCACCATCATCTACAGCAATACCCTTCAGTCCATCATGGCGATTGTAAAGGGCATGACTCAACTCAACATCGGCTACGGTGACACCGCTCAGCAGgacGATTCCAGGAAGCTCATGCACCTGGCAGACACCATTGAGGAGGGTTCCATGCCCAAAGAGCTGTCTGACATCATCATCCGGCTGTGGAAGGACACTGGTATCCAGGCATGCTACGACAGGGCCTCTGAGTACCAGCTTAACGACTCCGCTGGATActatctgaatgaCTTGGAGAGGCTGGTCCAGCCTGGATACATCCCCACTGAGCAGGACATGTTGCGATCAAGAGTAAAGACCACTGGTATCATAGAGACCCAGTTCGGCTTAAAAGACCTCAACTTCAGgaTGTTTGACGTGGGCGGCCAGCGCTCAGAGAGGAAGAAATGGATCCACTGCTTTGAGGGTGTGACCTGTATTATCTTCATCGCGGCTCTGAGCGCCTACGACATGGTGCTGGTGGAGGATGACGAAGTGAACCGAATGCACGAGAGTCTCCACCTGTTCAACAGCATCTGCAACCACCGCTACTTTATTGCCACCTCCATCGTACTCTTCCTCAACAAGAAAGACGTCTTCACCGAGAAGATCAAGAAGGCTCACCTCAGCATGTGCTTCCCCGACTACGACGGCCCCAACACCTATGAGGATGCTGGCAACTACATCAAACTCCAGTTCCTGGACCTGAACTTGCGGCGAGATATCAAGGAGGTCTACTCACACATGACCTGTGCCACAGACACAGAGAACGTCAAGTTTGTGTTTGACGCCGTAACCGACATCATCATCAAAGAAAACCTAAAGAGTTGTGGTCTCTTCTAAGAGCCACGCCGTATAGGGTGTCGGTTTACCCTCTGAATCCTATCCCCTTCCCCCTTCAAACTGCGGGTAACAATCTCCTCAAGAAGACCGGACGAAGGAGACCAACACAGCGACTGTCTCTGGAAGCTGCCATTCACAAATatgatactacacacacacacacacacacacacacgcacacacacactcgcacacacacacacacacacacacacacacaaattcataCAAAACGCAGCATCATAACCAAAGACATTTAAGTTCATTTGAGACCTGGAAAATAGGTGTACTGTCAAAGTAAGAGGATCTATACTGTACAGATTTATGTTATAAGTCAATCATAGTCAAGCTATCGTCCTTTGTTAAATGTCTTGAATAGGAACTCCTTTTCCATTGCAGTGCTATGCAACCTGTAGTTGAAACATCAGCACCTGTCAGCAGAAAGAGCTTCTTCCCCCAGACAGTACATTTGAATAGGTGTAAGGCAATGTATCATCTCTATGCTCCAGTAACTGGCATAAAAAGCTTTAAGAGATGGCCTCATCACCTGCAGACATATTTCAACTTGCGTGACAAGTTACAAAACCCATTCATCAGCAAAAATGGGTTGTATGTGTAGAACAGATATTGAGCTGTACATATAGTGGGCACAATATGAaagacctcaagctacaggagAGGACCAATGACATGAAATCGGACCAATTCATTCTTATATGTCAAACATCACAGAATTGTAAAGTTGAGGGTAACTTGTATCTAGAAATATTTCACTGATGAGCGACTGTAGTAAAGATGCAGTATTTTTATGGATGTAGCTTGGTCACATACTAATTTGAATACCTTATAAGTCTTTGGGCCACATTCTGTACAGAAATAAAAACATGGAAT

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein G(t) subunit alpha-like

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04631 GNAT1_2; guanine nucleotide-binding protein G(t) subunit alpha 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609306.2 True 2123 mRNA 0.47 9 42760386 42767396

Neighbor

gene id symbol gene type direction distance location
LOC110527789 LOC106565988 coding upstream 982 42685145 ~ 42759404 (+)
LOC110527788 LOC106582758 coding upstream 230004 42513096 ~ 42530382 (+)
camkva LOC106582757 coding upstream 259471 42461967 ~ 42500915 (+)
mst1ra LOC106582756 coding upstream 376327 42363630 ~ 42384059 (+)
LOC110527785 LOC106582755 coding upstream 527787 42226808 ~ 42232599 (+)
LOC110527794 LOC106582762 coding downstream 87524 42854920 ~ 42883680 (+)
LOC110527799 LOC106582765 coding downstream 156151 42923547 ~ 42930634 (+)
rbp7b LOC106582767 coding downstream 165587 42932983 ~ 42935248 (+)
LOC110527804 cssa22h3orf18 coding downstream 218264 42985660 ~ 42991364 (+)
LOC110527808 ab14b coding downstream 260528 43027924 ~ 43035211 (+)
G609226 NA non-coding upstream 228862 42530872 ~ 42531524 (+)
G609279 NA non-coding upstream 248593 42511543 ~ 42511793 (+)
G609277 NA non-coding upstream 250061 42510044 ~ 42510325 (+)
G609273 NA non-coding upstream 258613 42501559 ~ 42501773 (+)
G609223 NA non-coding upstream 329648 42430520 ~ 42430738 (+)
G609421 NA non-coding downstream 28141 42795537 ~ 42795783 (+)
G609423 NA non-coding downstream 35119 42802515 ~ 42802747 (+)
G609432 NA non-coding downstream 48842 42816238 ~ 42816557 (+)
G609437 NA non-coding downstream 54364 42821760 ~ 42822004 (+)
G609449 NA non-coding downstream 69455 42836851 ~ 42837260 (+)
G608390 LOC106582745 other upstream 929578 41827211 ~ 41830808 (+)
G607904 NA other upstream 1297217 41462824 ~ 41463169 (+)
G606977 NA other upstream 2125947 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 2319754 40438879 ~ 40457742 (+)
G606469 NA other upstream 2529161 40230885 ~ 40231225 (+)
G609436 NA other downstream 53560 42820956 ~ 42821245 (+)
G610436 NA other downstream 642995 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 816624 43584020 ~ 43584896 (+)
G610622 NA other downstream 1061608 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 1235228 44002556 ~ 44035143 (+)

Expression


Co-expression Network