LOC110527794 (LOC106582762)


Basic Information

Item Value
gene id LOC110527794
gene name LOC106582762
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42854920 ~ 42883680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609309.2
AGAAGACAGCGTCTCGTCTGCCGGAAATTCACACGAAGAAGAAGAATACGTCAATGAGAAACATAGGCTAGTTAACAGTATTTGATAAGACACAGCAGTCTGTGGTGTATgtacctagctagctactatCCGTGAATACTTCAATATGTCATATTAAATTGTCTTTGTTGAGCGTTTGACTGAAACAGAAGTTTGTGCGTTCACAACGATACTGACATTATAGCCACGGAAAATTTGCTAACACGCTAGCTAGTGTCAACAAACTGCAAGTGACTAGCGGGTTCAAGTGACCCTCCCCAAAAGCGCGATGCTGGTAACCGTTTTCTGCGCCCCGAATGACCGCTCGGAAATCACATTTTCTCTCGATGTGTCTCCAGAAATTGAACTTAGAGATTTTGTTGCTCTGTGTGAACTAGAATCAGGAATCCCTGCTGGGGAAATTCAGATCACATATGCAGAGCAGCCTCTGAAAGACCTGACCCGTGCTTTAGGGACCTATGGACTTAAGGATGGAGATGTGGTGGTGCTTAGACAGGCAGACCGAAGGCCACCACCAGCACAATCGGCCTTCCCAGGTCTCCCACGTATTGACTTCAGTTCCATCGCAGTCCCCGGCACTTCTTCTGGTTCCAGTCAACGGTTCACCCGTAGACAGCAGCAACAGGCCCCAACCTCACAACAGCAGCGCTCTCCACCCCCTGCTGCACCCCCATCCCTACCGGGCTCCGCCTCCTCTCCTCAGGGTCTGGATGACCCCGCCTTACTGCAGCAGATGCTCTTGGCCAATCCACACGAGCTGTCCCTGCTCAAGGAGCGCAATCCACCCTTGGCTGAAGCATTATTGAGTGGAGACCTGGAGCGTTTCACCAAAGTGCTGTTGGAGCAGCAGCAGGATCGGGCTcgcagagagcaggagaggatccGACTTCTGACTGCGGACCCATTTGACATGGAGGCCCAGGCCAAGATAGAGGAGGACATCAGGCAGCACAACGTAGAGGAGAACATGACCATTGCAATGGAGGAGGCCCCAGAGAGCTTTGGCCAGGTGGTTATGCTCTACATCAACTGTATAGTCAACGGGTACCATGTGAAAGCTTTTGTTGACTCAGGGGCCCAGATGACCATCATGAGTCAGGCGTGTGCCAAGCGCTGTAACATCATGCGTCTGGTGGACCGACGGTGGGCTGGCATCGCCAAGGGAGTGGGCACCCAGAAGATCATTGGCAGAGTCCACTTGGCTCAGGTCCAGATAGAAGGGGACTTCCTGCCTTGTTCCTTTTCCATCCTGGAGGACCAACCTATGGACATGCTGCTTGGACTGGACATGCTCAAGAGACATCAGTGTTCCATTGACCTGAAAAAGAACACGTTGCTGATCGGGACAACGGGCACTGAGACCCGCTTCCTGCCTGAGGCGGAGCTGCCAGAGTGTGCCCGGCTGGCATACGGGCCCGAGGGGCGCGAGGACGCCCAGCCAGATGAGATCGCAGACCGAGAGCTGGCAGAGGCACTTCAGAGATCTGTACAGGAGAGCGGTGGACAAACTACCTCACCGGAATCCCCACCATTCCCAACACTCAAACCCCCAAACAACATGCCCCTGTCCTCCCCCCTTTCCCCCGGTCACCCCCGGAGCCTTGCCCTGGACCgttctcagtctgctccagcctaCATGCGCCAGGCCGGGGCCCCAACACCAGGGCAGAGCCAAACCCAGCCTGGTTTCCTGGGTCTCCCCATCCCTGGGCCCTCATCCCAGAACATAGCACCTACAGCCCAACAGTCTCCTCTCTCAGACCCAAGCCCTACCAACCCCACCCAGCGACTCCTACCCACCATCCCCACTCCCCCGGCTCAGGATCTGTCCACATGCACCCCTCCTGCAGACAAGTCTGTGACTGGCACTCCCACCCTGGGATGTTCAGACAGTCAGATCCCTCCAGAGATGTGTGTCTCTGAGAAGGCAAATAATGGCTCCCTGTCCCCCCTCCCAGAGGAAAGCCTCCCAATTCAGCCCATGGAGCAGGAGGACATGTCAGTCAACACCACAGATCACCGGACATGTCTGAGTAACCCAAGTCAGCAGAGTGGAGAAGGGGGTTCCCACCGTCCCATCTCTAATCCCCCATCACTCACCCTGGAGCCCTGTCTTTCTGGATCCACATCTGCAGAGATGGAgtctccccctgcctcctcccAGAGCACTGTGCAATCAGAGAGGGACCAGCCAGAGGGGGAGCGCTGTCCCAACTCAGACCAGATCCCGTCTCTGGCCCAGGCCCTGCGGGAGCTCCATGAGCTGCTGGTGTCCAACAGCTGTGGCCTGTCCCCCCAGGACCGCAGTGTTTCCTGCTCCCCCTCACACAGACAGGACGCTGACGGACTGAACGACAACCACAACCCCACCGCAGAGCCCCAAACCCTGACGCCTGAAAACACCACACAACCCTCCCCCTTTACTGCCCTTATAGCTGGTGCAGAACCATGCGATGCCAAAGCCAACCATGCTGCTGCTATGTCTGACGGAGGGCCTCCTCCTGACTGTGTCCTGCCAGGCACCTCTGGCCAGGAGCAGAGTCTGGAGACTAGGGACAGGGCAGAGGCTGAACCAGGAGCGGGTCAGGGAGAACTAGAACCACAGTGTCCAGACAACTCCAGGGGGGGAAAGAGGGCTGACGGGTATGGGCTAGATGCCAGTAAAAACAGAGGGACTGTGTCTGAGGTCCAGAGTCCCTCACCCTCTTCACTCCAAGCAGACCTGGAGTTCAGGGAGCCCCCGGAGGGGCAGCAAGGGAGGGGCGTGGCAGACGGGAGAGCCTCTGCCATTGACAACCCAGACACTCCCGGCCTCCATCCTGAGCCAACACAGCGGAGCCCTCTGTCCATGGCTGTGGGTTCACCTGAGGATGACTCCGGCCTTTCGCCCCGCACTTCACCTCCTCAGGCCCTGGGCCCCCAACACCCCTCCTCTCCAgcccctctcttctctgctccACATCCCGTTACTGAACAGTTTCCGGTTGAGCACATCCAGAGGATCCAGACAGCTGGCTTCTCTGCCAGGGAGGCTGCAGAggcactggaacaggcccagggCTGTGTGGAGCTGGCTCTGCTGGCTCTGCTGGCCCGCAAGATCACTGTGCCCACCTAGACACTCACGACATTACAATCATATGGGAGACCCAGGCTCTTGTCAACATGGGTTTCATGTGTACTCTTGTCTTATTGTTGATGGTGACATCTGAACCCCCCTGGCCTCGCAGCCACTACATGCTAAAGGGGAAATGCTTTTTGTCTCTTGGTTTCTCACAGACCATACAACAACTTATTTGTTCCTAGATTGAGCCAATATGATCGGAGTTGTGTTTGCATGCAGCAGTAGTTGGTGCCTATTTCATGGATTTTATAGATTGGTAGATTGATTTCcttaattcccccccccccccctcgtttaACCCTGTATATACGTATTTTATTCTAAACTCAATTGAACTGCCCCATTGACGAGACAATGTTGGTAAATGTTTACATTTGTATGTGAAATGGCATTTGTTTAAAGGGCTGAAGATGAACCTAAAATACTATGTTAAAATGTCCGATTTGTCAGCAGTATTATTGCTCCGCTAAACAAttaatttgtttttaaattgaTGTTTGATTTTAACTCCGATTCTGATAAAacccaccagacagttaacatatTACACTGTGGAAATGACTGCATTTAAGAAGCATTGCTAACTGCTGATCTTTTGTCTTTTTCTGCCGATTGTTAGCATTTTGTAATATGACATTCTCTCAGTCATATGATTATTGCCAATGCTGGGGAACCTGGGTGTTTTCATGTTTAAAACAGCTTGCACAAGAAAATAAATCAAGCAGCACTCTTTTTACTTTCAGCACGACTTTGTTGATAGAGGAACATCAACATAGCCAAGGAGTTAAGAGTATTGAATATTTCTGGGGATGCAGGTAAAGGATGAGGTCTTCAAATATAACAGCATGTATAACATCTTTGGAAATGTGATATGGTCATTAATAGAGGGGGTTTGGTAGTTCATGTTCACTTTGAGACATCTATCATACATGTAAAACTGGAAACCTCTCCCACAGTCCAAGTCTACCCTAGCCAGCTGTCAGATCATTCATTCATATATCCAttatcaactttttttttttttttaattgcattATCTGGATCATATTCATATACCAACAACATCGTGGCAGGTTTAATTATTTAGATTTGATCTTGTACTCAATTTAAACTCCCAAATAAAGTAAAACTGGTTCtttgta
>XM_021609310.2
ATGCTGGTAACCGTTTTCTGCGCCCCGAATGACCGCTCGGAAATCACATTTTCTCTCGATGTGTCTCCAGAAATTGAACTTAGAGATTTTGTTGCTCTGTGTGAACTAGAATCAGGAATCCCTGCTGGGGAAATTCAGATCACATATGCAGAGCAGCCTCTGAAAGACCTGACCCGTGCTTTAGGGACCTATGGACTTAAGGATGGAGATGTGGTGGTGCTTAGACAGGCAGACCGAAGGCCACCACCAGCACAATCGGCCTTCCCAGGTCTCCCACGTATTGACTTCAGTTCCATCGCAGTCCCCGGCACTTCTTCTGGTTCCAGTCAACGGTTCACCCGTAGACAGCAGCAACAGGCCCCAACCTCACAACAGCAGCGCTCTCCACCCCCTGCTGCACCCCCATCCCTACCGGGCTCCGCCTCCTCTCCTCAGGGTCTGGATGACCCCGCCTTACTGCAGCAGATGCTCTTGGCCAATCCACACGAGCTGTCCCTGCTCAAGGAGCGCAATCCACCCTTGGCTGAAGCATTATTGAGTGGAGACCTGGAGCGTTTCACCAAAGTGCTGTTGGAGCAGCAGCAGGATCGGGCTcgcagagagcaggagaggatccGACTTCTGACTGCGGACCCATTTGACATGGAGGCCCAGGCCAAGATAGAGGAGGACATCAGGCAGCACAACGTAGAGGAGAACATGACCATTGCAATGGAGGAGGCCCCAGAGAGCTTTGGCCAGGTGGTTATGCTCTACATCAACTGTATAGTCAACGGGTACCATGTGAAAGCTTTTGTTGACTCAGGGGCCCAGATGACCATCATGAGTCAGGCGTGTGCCAAGCGCTGTAACATCATGCGTCTGGTGGACCGACGGTGGGCTGGCATCGCCAAGGGAGTGGGCACCCAGAAGATCATTGGCAGAGTCCACTTGGCTCAGGTCCAGATAGAAGGGGACTTCCTGCCTTGTTCCTTTTCCATCCTGGAGGACCAACCTATGGACATGCTGCTTGGACTGGACATGCTCAAGAGACATCAGTGTTCCATTGACCTGAAAAAGAACACGTTGCTGATCGGGACAACGGGCACTGAGACCCGCTTCCTGCCTGAGGCGGAGCTGCCAGAGTGTGCCCGGCTGGCATACGGGCCCGAGGGGCGCGAGGACGCCCAGCCAGATGAGATCGCAGACCGAGAGCTGGCAGAGGCACTTCAGAGATCTGTACAGGAGAGCGGACAGCACTGATGCATTTGTGAAGACAGCTGGAGAGGGCCTTACCAACCAGGTGGACAAACTACCTCACCGGAATCCCCACCATTCCCAACACTCAAACCCCCAAACAACATGCCCCTGTCCTCCCCCCTTTCCCCCGGTCACCCCCGGAGCCTTGCCCTGGACCgttctcagtctgctccagcctaCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106582762 isoform X1

GO: NA

KEGG:

id description
K11885 DDI1; DNA damage-inducible protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609309.2 False 4305 mRNA 0.52 9 42854920 42883680
XM_021609310.2 True 1420 mRNA 0.56 10 42855227 42881051

Neighbor

gene id symbol gene type direction distance location
gnat1 LOC106582761 coding upstream 87524 42760386 ~ 42767396 (+)
LOC110527789 LOC106565988 coding upstream 95516 42685145 ~ 42759404 (+)
LOC110527788 LOC106582758 coding upstream 324538 42513096 ~ 42530382 (+)
camkva LOC106582757 coding upstream 354005 42461967 ~ 42500915 (+)
mst1ra LOC106582756 coding upstream 470861 42363630 ~ 42384059 (+)
LOC110527799 LOC106582765 coding downstream 39867 42923547 ~ 42930634 (+)
rbp7b LOC106582767 coding downstream 49303 42932983 ~ 42935248 (+)
LOC110527804 cssa22h3orf18 coding downstream 101980 42985660 ~ 42991364 (+)
LOC110527808 ab14b coding downstream 144244 43027924 ~ 43035211 (+)
LOC110527818 NA coding downstream 641007 43524687 ~ 43526668 (+)
G609457 NA non-coding upstream 7026 42847466 ~ 42847894 (+)
G609449 NA non-coding upstream 17660 42836851 ~ 42837260 (+)
G609437 NA non-coding upstream 32916 42821760 ~ 42822004 (+)
G609432 NA non-coding upstream 38363 42816238 ~ 42816557 (+)
G609423 NA non-coding upstream 52173 42802515 ~ 42802747 (+)
G609489 NA non-coding downstream 6346 42890026 ~ 42890568 (+)
G609504 NA non-coding downstream 32151 42915831 ~ 42916504 (+)
G609486 NA non-coding downstream 35538 42919218 ~ 42919522 (+)
G609482 NA non-coding downstream 36274 42919954 ~ 42922980 (+)
G609511 NA non-coding downstream 59051 42942731 ~ 42943096 (+)
G609436 NA other upstream 33675 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1024112 41827211 ~ 41830808 (+)
G607904 NA other upstream 1391751 41462824 ~ 41463169 (+)
G606977 NA other upstream 2220481 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 2414288 40438879 ~ 40457742 (+)
G610436 NA other downstream 526711 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 700340 43584020 ~ 43584896 (+)
G610622 NA other downstream 945324 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 1118944 44002556 ~ 44035143 (+)
G613664 NA other downstream 3395054 46278734 ~ 46279333 (+)

Expression


Co-expression Network