LOC110527797 (hspb7)


Basic Information

Item Value
gene id LOC110527797
gene name hspb7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42888618 ~ 42889492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609312.2
CGCGTAGTGGACAGTGAAGTGTCCTCACAGTAAAGCATTGGGCGGATTAATACAGTGGAAAACTGCTGAATATTTGCCATTTCCACCATCTACCTCCTCACTTCAACTTCAAAATCCCGCATGGAGAGAACTCAAGGCCACTCTCATCCTACGGGGACGATCCAGTCGATGGGAGACATGTACCTGTTCACAGTGGATGTGAGTGAATACTCTCCAGAGGATGTCATCATCACATCGTCAAACAACCTTATAGAAGTCTATGCGGAGAAGCTAGCAGAGGATGGCACGGTTAGGAACACTTTTGCCCACAAGTGCCAGTTGCCGGGGGATGTGGATCCCATGTCTGTGACAACCTCATTGGAAAACAGTGGTGGCTGTCTGACTCTGACTGTCAAAGCCAGAAGAAATTAGTCTTCCATAGGATGTGGGAGGCGTTGAAAaagtttaaacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

symbol description
hspb7 Acts upstream of or within several processes, including Kupffer's vesicle development; cardioblast migration to the midline involved in heart rudiment formation; and determination of left/right symmetry. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including Kupffer's vesicle; adaxial cell; cardiovascular system; musculature system; and pericardial region. Used to study heart disease. Orthologous to human HSPB7 (heat shock protein family B (small) member 7).

NR:

description
heat shock protein beta-7-like

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609312.2 True 502 mRNA 0.48 3 42888618 42889492

Neighbor

gene id symbol gene type direction distance location
cplane2 rsg1 coding downstream 1392 42884956 ~ 42887226 (-)
si:ch73-361p23.3 LOC106582621 coding downstream 42810 42842713 ~ 42845808 (-)
LOC110527110 LOC106582620 coding downstream 73581 42805342 ~ 42815037 (-)
LOC110527792 LOC106565990 coding downstream 95580 42775477 ~ 42793038 (-)
edem1 LOC106582760 coding downstream 114619 42768087 ~ 42773999 (-)
LOC110527798 epha2 coding upstream 1818 42891310 ~ 42911129 (-)
LOC110527801 LOC106582766 coding upstream 39757 42929249 ~ 42933032 (-)
LOC110527802 LOC106582768 coding upstream 55705 42945197 ~ 42952276 (-)
LOC110527803 LOC106582769 coding upstream 70927 42960419 ~ 42982836 (-)
LOC110527805 NA coding upstream 101955 42991447 ~ 43001777 (-)
G610058 NA non-coding downstream 35837 42852442 ~ 42852781 (-)
G610049 NA non-coding downstream 47331 42841058 ~ 42841287 (-)
G610046 LOC100380853 non-coding downstream 54348 42833577 ~ 42834270 (-)
G610040 NA non-coding downstream 59689 42828689 ~ 42828929 (-)
G610025 NA non-coding downstream 84850 42803477 ~ 42803768 (-)
G610084 NA non-coding upstream 635 42890127 ~ 42890427 (-)
G610090 NA non-coding upstream 19797 42909289 ~ 42909517 (-)
G610093 NA non-coding upstream 23602 42913094 ~ 42913334 (-)
G610096 NA non-coding upstream 26797 42916289 ~ 42916538 (-)
G610099 NA non-coding upstream 29721 42919213 ~ 42919535 (-)
G610047 NA other downstream 52549 42835747 ~ 42836069 (-)
G608900 NA other downstream 862914 41968569 ~ 42025704 (-)
G608888 LOC106582750 other downstream 937374 41944571 ~ 41951244 (-)
LOC110527764 LOC106582736 other downstream 1539719 41156665 ~ 41348915 (-)
G610182 NA other upstream 217635 43107127 ~ 43162969 (-)
G610190 NA other upstream 223656 43113148 ~ 43116144 (-)
G610183 NA other upstream 238319 43127811 ~ 43167320 (-)
G610185 NA other upstream 262078 43151570 ~ 43157089 (-)
LOC110527812 LOC106582796 other upstream 546086 43435578 ~ 43439076 (-)

Expression


Co-expression Network