LOC110527801 (LOC106582766)


Basic Information

Item Value
gene id LOC110527801
gene name LOC106582766
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42929249 ~ 42933032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983273.1
TTTGAGATAAGCGCTTGCAAATAGAATAGGCTGTAACGCATGTACACACTCTTTGGTTGCTCTCTTTCCAACAATGTAAAGGGCCACTATAAATGAGAGTGATATGCAGTTTCATTCAAGGTCGTTAGAGCGCGCCCACAATCAAAAACAACTATAACCCcagtttgttttttattttttacggtAATGTTCGGTTGAGGAAATCTGATCCCTATAGGCAGGCCAGTGAAGGCCACGCATGGACCCACCAGGGTATCTGATGCAACGCGTGGCTGGGGGATTATTTTCACAGTAGTCAGAACTGGAAAGGATGTGTCATCAAAACCCATCAACTCTCACTTCTTTGCCAGAGTTTCTTCAAAATCGATGCTGACAATGCTACATTACGCCTTAGTATACATGGCATATCATACCAGCAGATGGCTTCCAAGGAATGAAAGGTTAAAATTTCAAATTATTAATGCAGTCTTTGTGGCACTAGTTCTCATCCCTCAATTGTTTGTGCTAACCAGGCCCAAATCCTCTAGATACTGCCAGCAGCCTCTTCTGAACAATCTCACTGCCTTCATTATCATGTCCTTCATGGCAACAGGTTTTGCAGTAACATTCACACTGATAGACCCAGTGCCCCAAAGCTTCAGGGCAGCCTACCATGGGTTTGGACTTGTATCTTTTGTCCAGGGACTATGCACCATCGCCCTGACTCTGACTGCACAACAGTGTGCGAAAACAACTCCTGAGCTGTACTATTTGTCCCTTATTCTATCATTGGCTTGTATCCTGAGTACAGCCTTCTTCTTGGTGAAGGGAGGATTCTGGGTAAAAACCAATAGGCTACCCAGGCCTTGCCAGAGAGGGAACAATGGCTAACTAGTCCAACCAGTATACAGCTGCTCCAGGTTGCAATTAGATATGCGCCATAGACCCATCCATCTATAATTGATGCTGTTTCCAGGCTACCACCAGCAAACGATACTGTTGCACAGTATGGTGACTAGTGTAGTATGTAGTGAATTTACATGTCCCATTTCCTTAATTTGATACACTTGAAATCAATCGGTGTGCATATGTCTATTTGCATTCATTTACTCCGTTTTGAGTGTCAAATGAACTATTAAAATGGCTACCACTATCATCAAGGGGCATATACATTTTTCAAGTACCCAACGTTTCTGCTTAAACATTCCTTCGTTTGAAATCGCACAGTTAAAAAGAAATAATCTGTGCAGAAAGGGTTGTGAAAGCTGTAGTTTATTTCCTTGTGGTAAAACAGTGATTAACTGTTACATTAATTccatgtgtgtacagtgtgtagaaAAATGGTGTTTAGGTCCCCATatgtataaaaataaacaatTGTAAATCATTTATTCATAGACTGTTTGAACCTCAGAGTGATAAGGAACAAACCACACTTTCACTTACAGCATTCAGAATAATCAGGTGCTATAACATTTGTATGTGCAAACATCAAAGTGAAACCTAATTACATATTTTTCCCAGGTAAAATAACCTTCAGCTAATACATATATATTAACATACACCTGTCCGTAAAATGAATTAAGGCAACGCAGTGAAGCGGTTGAACTAAACTTCATCAACCCATTTTAAAATCCATTTCAATATCCTAAAAAAAAAGGCCCTTTACGTAAGAGGAACTCCTAATTCAATCCACAAATAAAACATCTATGAACTCAAGTTAGTTACacactttcaaatcaaatgttgtgcAGTGAGCAGATCTGTGTGAATGCCAGTGAAGAGCGTCTCAAATGAGTAGACTCACAGTAtcaaaaaaaaaatagttttggaAGGTCACAACgtagttaagcatttcactgtacttgtacgACATCTTGTAAGCACCATTTCACTCACATTAAGAGATTCTCTGATACtttttgtatacattttagccagtagttctgaaagtagccaaaagtggtccccggAAATTGCATACAACATAACAcatgtgcaccacgtcattgctcattctctctttctctgctgtgTCCACTGAGAAGTTGGGCCCACCCTGCAACCTCATTGGATAATGCCGGCCAggcctcttgctagctgtcactcaaatgtgaggggctgaagctcattggctaggaCTCAAATTGCTACGGGGCTGGCCCAAGAGGGGGAAATGTAGGGAAATTAGCACTGCACAGGTTCAAGAAAACAAtcactttcaaactagggattttgtggctATCTACAGACACATACAGCCCAAAGcgagaggtttaaaaaaaaagcaTTTCTAAGTCCCCAAagtaccggagcatgtctttaaaagAGGAAGTATTAGGAACTACTGGGCTGGCTCATAGgggagaatacacacagggggtCAAAGGCTGTGGAAATTGTACATTTCACATAGATATCAAATAATACATTAGATAattgtgtttttatttgattttttatccACAAGCATAGATTAAACCAAAGGCAGCAATGGATCATAATATGCTTTTTTATGTGATTTAAATGTACTGGACAGTACATTTTGCATTTTGATTTCAAATTGGCATTTAGGCACAAATACAATGATACATGGCTATAGATTACATTATCTGTCGACCATAGGAGCAAAAGGTTCAAAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106582766

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983273.1 True 2621 mRNA 0.40 6 42929249 42933032

Neighbor

gene id symbol gene type direction distance location
LOC110527798 epha2 coding downstream 18120 42891310 ~ 42911129 (-)
LOC110527797 hspb7 coding downstream 39757 42888618 ~ 42889492 (-)
cplane2 rsg1 coding downstream 42023 42884956 ~ 42887226 (-)
si:ch73-361p23.3 LOC106582621 coding downstream 83441 42842713 ~ 42845808 (-)
LOC110527110 LOC106582620 coding downstream 114212 42805342 ~ 42815037 (-)
LOC110527802 LOC106582768 coding upstream 12165 42945197 ~ 42952276 (-)
LOC110527803 LOC106582769 coding upstream 27387 42960419 ~ 42982836 (-)
LOC110527805 NA coding upstream 58415 42991447 ~ 43001777 (-)
LOC110527807 LOC106582772 coding upstream 70282 43003314 ~ 43027816 (-)
LOC110527806 LOC106582605 coding upstream 101610 43034642 ~ 43329567 (-)
G610099 NA non-coding downstream 9714 42919213 ~ 42919535 (-)
G610096 NA non-coding downstream 12711 42916289 ~ 42916538 (-)
G610093 NA non-coding downstream 15915 42913094 ~ 42913334 (-)
G610090 NA non-coding downstream 19732 42909289 ~ 42909517 (-)
G610084 NA non-coding downstream 38822 42890127 ~ 42890427 (-)
G610101 NA non-coding upstream 2499 42935531 ~ 42935770 (-)
G610102 NA non-coding upstream 2924 42935956 ~ 42936258 (-)
G610103 NA non-coding upstream 3365 42936397 ~ 42936621 (-)
G610109 NA non-coding upstream 9094 42942126 ~ 42942525 (-)
G610132 NA non-coding upstream 51693 42984725 ~ 42985483 (-)
G610047 NA other downstream 93180 42835747 ~ 42836069 (-)
G608900 NA other downstream 903545 41968569 ~ 42025704 (-)
G608888 LOC106582750 other downstream 978005 41944571 ~ 41951244 (-)
LOC110527764 LOC106582736 other downstream 1580350 41156665 ~ 41348915 (-)
G610182 NA other upstream 174095 43107127 ~ 43162969 (-)
G610190 NA other upstream 180116 43113148 ~ 43116144 (-)
G610183 NA other upstream 194779 43127811 ~ 43167320 (-)
G610185 NA other upstream 218538 43151570 ~ 43157089 (-)
LOC110527812 LOC106582796 other upstream 502546 43435578 ~ 43439076 (-)

Expression


Co-expression Network