LOC110527802 (LOC106582768)


Basic Information

Item Value
gene id LOC110527802
gene name LOC106582768
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42945197 ~ 42952276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983274.1
ATGACGCACTTCCTCCATGATAATGCCATTTTGATCGGAAAGAATAGCGTGTTTATTTTCGTCGCAGGTGTGTTTGAGGTTGAATATTTGCTCTAAACGCGCAGTATTACGTGTATGCTACTTTAGAAAATATTAGTTAAGACTTAACGTTAATTATACGATTGCTCGATTTCAAATTACTTGGACGAAATTTCAACTGTTAGGACCAACACGGCACGAAACGCCGTTAGCTCACTAAAAGCTCCATTGCTAAAGCTAGGTCGTCCGGTGTAGATGACAGAGCAAGCTAACAAAGGAACACGGAGTGGGACCGAGGCAGGTTCGTTTGCTTGAAAATCTCACGAGATCTAGTTAGTCGtttaaatacaatttcatttaaGCAACGTCCAACGTCTAAACTGACTTATTTTTTATAAACCGCGGTGTATTTTCGgaactattttttttttgtattaatcAACTAGTCGTCGGGCATATCGAAGTGGGTAGAGAGCTAATTTTACATAGCCAGTGCAGTATTTTTGACTGAGAAAAGGCGTAATTGTAGGTACAAATGGCAGAGTTGTACATTCGTGTGGCCGAAGAAGAGAATGAGGAGCCCATGGAGATCCCTTCTGAGGACGATGGCTCTGTGTTGCTTTCTACCGTGGCAGCTCAGTTTCCTGGGGCCTGCGGCCTACGATTCAGGAGTCCTGTTTCACAGTGTATGAGAGGGGTCCGTTTGGTGGAAGGGATTCTTCATGCGCCTGAGAACGGCTGGGGCAATCTGGTCTATGTCGTCAATTATCCCAAAGACAATAAAAGGAAAATGGACGAGATTGATGCCGCCTCTGCTGTGAAGATGAAGAGAGGTGACATGAAGACATCTGATCTGATTGTACTGGGGTTGCCATGGAAGACAACTGAACAGGACCTGAAAGATTACTTCAGCACCTTTGGGGAAGTCATCATGGTGCAGGTGAAACGAGATGTGAAGACTGGAAACTCAAAGGGGTTTGGCTTTGTGAGGTTTACTGAGTATGAGACTCAAGACAAAGTGATCTCACAACGCCACATGATTGATGGAAGATGGTGTGACTGCAAACTCCCCAACTCCAAGCAAGGTCCAGATGAGCCCATGAGAAGCAGAAAAGTGTTTGTAGGCCGTTGCACTGAAGACTTGTCCGCTGATGAACTGCGACAGTTCTTCATGCAGTATGGTGAGGTCACTGACGTCTTCATCCCCAAGCCCTTCCGTGCCTTTGCCTTCGTCAGCTTTGCCGATGACCAGGTTGCCAGTTCCCTATGTGGAGAGGACCTGATTATTAAGGGGGTCAGCGTGCACATCTCAAATGCTGAGCCAAAACACGGCAGTAGGCAGATGACGGAGCGAGCAGGGCGGTTTGGGAACGGGTTTGGGGCTCAGGGCTTTGGTAGTAACCGCACAGGGTTAGGGACCAGCGCCAGTAGTAATATGGCTAATTTTGGGAACTTTAGTCTGAACCCTGCCATGATGGCTGCTGCTCAGGCTGCCCTACAGAGCAGTTGGGGAATGATGGGTATGTTGGCTAGTCAGCAAGGGCAAACTGCCACCTCAGGCACCACCTCCACTGGGCAGACTAACTCCACCAGGGATCAGAGCCAGGCCTACAGCACAGGCAACAGTAACTACGGCACCAACTCAGCCAGTCTAGGTTGGGGTACCGGTTCTAACGCAACAGCCAGTGGTAGTGGGTTTAGCTCAGGATTTGGCTCCAGTATGGAGTCCAAGTCTTCCGGGTGGGGTATGTGAAATAGTTTGATGGTAAGTATTGTGAGGTCTTTTTCCTAATTTATTTCTGGTGTTATGCGTATCTGATACTTAAACGCTTTTGTGAAGGCTGTTTTGTACATTTGGAGATCAAGATTTTAATTTAGAAAGTGTTTGAAATGAATTATTGTTTACCAGAGTCGTGCTACTTTTGAAGTCAAATTGATTTGTTCTTAAGTTTGTTATATCCTGACTTATTTTCAACTGGATTCTTTGATGCATGCATTGTGAGTTGTGATGTTTCTGAATGCATGAGAAATCACTGGTTCACTATCCATCTGTATATTTGACAACAATCTTGCATTGGAAAGAATCTGGTTGAAACGTAAATGTTTTAAGTGCAACTTTATTTTCAGTCTCTAGTTAAATGGAAAAGCCTTCACTACAATCTCTTCTGCAGTTCACCTCTCTTCCATTTTCCCGGGAAGAAGCTCCTCTTTGGCAGCATTCTTTGGGTGATGTCAATATCACTCTCTTCCATCTATAAATGCTTTGCCATCAAAGAACGGCTTCACTCCGCATGTTCTAAGAGACGGTGGGTGTTTAATTTTTATCCACTTTTTAATGGAAAGAACTGCGCAACTGACATTAAGAACTCGTGAGTGCGATTGAGGATGGCTTGTGGCGAAGAGTGAATCGATGAGTGagcgaacagagagagaaaaagaaagcgtGAAACGGACTGGTTGTGCGATGAAAGAGCCCAATTTGACTGCTGTTGTGAGTGTGAATGGAATCTGCAGATGCTAcaagcccccctcccccccccccccaaatggaCTTTCATTTACTAGTACTTCAAGATCTCTCTTTGCAATTTGTCACACCCTCCTGTAGTATATTGATCAAGTGCAGAAGTGGTACCCAAATGTAGTGTGGAATGTTGTGCTGAATATTTGTCTTGTATTATATAACCTACATGacctgagtggtgtgtgtgtgtggtttctttCCTTGTTATTGATGCTCTCTATGTGTGAACTTTGATGTGGATGACACCTGCTGAGGACACTGGGGACGTGAGTGATGGTGTGAGAACGTGGTGTGGTTGTCAAATGTTTCCCAGTGTGTGATTCTCTGGTGTGTTTTAGATATGTCAAATGGAGGTCTCTAATAAAATGTTTGAATAGTTATATTTATTTGAATACTAGTTACTTTTGTGTCATTTGAATTGTCAAATCTAACTTAATTCACATATCTAGGGACCTTGGACACTGCTGACCGAGGTTTGCATCTGAACCCAGACCGGAGTCAGTGTCCTGAAGGATGAAGACAGAAGTCCTCACAGGCTTGAAATGGGGCCTCTTAGATTTATGCCAACTTAAAAGGAGTCAGAATTGGGTAGTAAGTTTGGATACATTTATGATCTATTCTGTCAGACATAAccaaggtttttatttttttcaatgggCTTCATTTTAAATTAAAGCGAATGCATTATTTGGGCAGAGGAGTAATTTATGTCTGATGTATTCTTTGGGACATAAGACAAATAATGAACAGGTTATGTTATTTCAGACTTGCACACTGGGAAATAGTGTCCTGTCCATAAAGGATGTTATGGCATGTGTCGAAATGAAGCTAAATGGAAACACCAGTTGTCCTTTTAATAATAATTTTTTATTGAACAGATTTTTTTAGTATAACCTGTTGGGGAGATGAAGTTGGAACCGTGCTCTAAACATTTCAGCCAATGAATATATTCTCACTGTACCACTTGTTGGATGATAATTAATAAATATTTTCTACAAGTTG
>XR_005052581.1
ATGACGCACTTCCTCCATGATAATGCCATTTTGATCGGAAAGAATAGCGTGTTTATTTTCGTCGCAGGTGTGTTTGAGGTTGAATATTTGCTCTAAACGCGCAGTATTACGTGTATGCTACTTTAGAAAATATTAGTTAAGACTTAACGTTAATTATACGATTGCTCGATTTCAAATTACTTGGACGAAATTTCAACTGTTAGGACCAACACGGCACGAAACGCCGTTAGCTCACTAAAAGCTCCATTGCTAAAGCTAGGTCGTCCGGTGTAGATGACAGAGCAAGCTAACAAAGGAACACGGAGTGGGACCGAGGCAGGTTCGTTTGCTTGAAAATCTCACGAGATCTAGTTAGTCGtttaaatacaatttcatttaaGCAACGTCCAACGTCTAAACTGACTTATTTTTTATAAACCGCGGTGTATTTTCGgaactattttttttttgtattaatcAACTAGTCGTCGGGCATATCGAAGTGGGTAGAGAGCTAATTTTACATAGCCAGTGCAGTATTTTTGACTGAGAAAAGGCGTAATTGTAGGTACAAATGGCAGAGTTGTACATTCGTGTGGCCGAAGAAGAGAATGAGGAGCCCATGGAGATCCCTTCTGAGGACGATGGCTCTGTGTTGCTTTCTACCGTGGCAGCTCAGTTTCCTGGGGCCTGCGGCCTACGATTCAGGAGTCCTGTTTCACAGTGTATGAGAGGGGTCCGTTTGGTGGAAGGGATTCTTCATGCGCCTGAGAACGGCTGGGGCAATCTGGTCTATGTCGTCAATTATCCCAAAGACAATAAAAGGAAAATGGACGAGATTGATGCCGCCTCTGCTGTGAAGATGAAGAGAGGTGACATGAAGACATCTGATCTGATTGTACTGGGGTTGCCATGGAAGACAACTGAACAGGACCTGAAAGATTACTTCAGCACCTTTGGGGAAGTCATCATGGTGCAGGTGAAACGAGATGTGAAGACTGGAAACTCAAAGGGGTTTGGCTTTGTGAGGTTTACTGAGTATGAGACTCAAGACAAAGTGATCTCACAACGCCACATGATTGATGGAAGATGGTGTGACTGCAAACTCCCCAACTCCAAGCAAGGTCCAGATGAGCCCATGAGAAGCAGAAAAGTGTTTGTAGGCCGTTGCACTGAAGACTTGTCCGCTGATGAACTGCGACAGTTCTTCATGCAGTATGGTGAGGTCACTGACGTCTTCATCCCCAAGCCCTTCCGTGCCTTTGCCTTCGTCAGCTTTGCCGATGACCAGGTTGCCAGTTCCCTATGTGGAGAGGACCTGATTATTAAGGGGGTCAGCGTGCACATCTCAAATGCTGAGCCAAAACACGGCAGTAGGCAGATGACGGAGCGAGCAGGGCGGTTTGGGAACGGGTTTGGGGCTCAGGGCTTTGGTAGTAACCGCACAGGGTTAGGGACCAGCGCCAGTAGTAATATGGCTAATTTTGGGAACTTTAGTCTGAACCCTGCCATGATGGCTGCTGCTCAGGCTGCCCTACAGAGCAGTTGGGGAATGATGGGTATGTTGGCTAGTCAGCAAGGGCAAACTGCCACCTCAGGCACCACCTCCACTGGGCAGACTAACTCCACCAGGGATCAGAGCCAGGCCTACAGCACAGGCAACAGTAACTACGGCACCAACTCAGCCAGTCTAGGTTGGGGTACCGGTTCTAACGCAACAGCCAGTGGTAGTGGGTTTAGCTCAGGATTTGGCTCCAGTATGGAGTCCAAGTCTTCCGGGTGGGGTATGTGAAATAGTTTGATGGTAAGTATTGTGAGGTCTTTTTCCTAATTTATTTCTGGTGTTATGCGTATCTGATACTTAAACGCTTTTGTGAAGGCTGTTTTGTACATTTGGAGATCAAGATTTTAATTTAGAAAGTGTTTGAAATGAATTATTGTTTACCAGAGTCGTGCTACTTTTGAAGTCAAATTGATTTGTTCTTAAGTTTGTTATATCCTGACTTATTTTCAACTGGATTCTTTGATGCATGCATTGTGAGTTGTGATGTTTCTGAATGCATGAGAAATCACTGGTTCACTATCCATCTGTATATTTGACAACAATCTTGCATTGGAAAGAATCTGGTTGAAACGTAAATGTTTTAAGTGCAACTTTATTTTCAGTCTCTAGTTAAATGGAAAAGCCTTCACTACAATCTCTTCTGCAGTTCACCTCTCTTCCATTTTCCCGGGAAGAAGCTCCTCTTTGGCAGCATTCTTTGGGTGATGTCAATATCACTCTCTTCCATCTATAAATGCTTTGCCATCAAAGAACGGCTTCACTCCGCATGTTCTAAGAGACGGGACCTTGGACACTGCTGACCGAGGTTTGCATCTGAACCCAGACCGGAGTCAGTGTCCTGAAGGATGAAGACAGAAGTCCTCACAGGCTTGAAATGGGGCCTCTTAGATTTATGCCAACTTAAAAGGAGTCAGAATTGGGTAGTAAGTTTGGATACATTTATGATCTATTCTGTCAGACATAAccaaggtttttatttttttcaatgggCTTCATTTTAAATTAAAGCGAATGCATTATTTGGGCAGAGGAGTAATTTATGTCTGATGTATTCTTTGGGACATAAGACAAATAATGAACAGGTTATGTTATTTCAGACTTGCACACTGGGAAATAGTGTCCTGTCCATAAAGGATGTTATGGCATGTGTCGAAATGAAGCTAAATGGAAACACCAGTTGTCCTTTTAATAATAATTTTTTATTGAACAGATTTTTTTAGTATAACCTGTTGGGGAGATGAAGTTGGAACCGTGCTCTAAACATTTCAGCCAATGAATATATTCTCACTGTACCACTTGTTGGATGATAATTAATAAATATTTTCTACAAGTTG

Function

NR:

description
TAR DNA-binding protein 43-like

GO: NA

KEGG:

id description
K23600 TARDBP, TDP43; TAR DNA-binding protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983274.1 False 3544 mRNA 0.43 5 42945197 42952276
XR_005052581.1 True 2877 mRNA 0.43 6 42945197 42952276

Neighbor

gene id symbol gene type direction distance location
LOC110527801 LOC106582766 coding downstream 12165 42929249 ~ 42933032 (-)
LOC110527798 epha2 coding downstream 34068 42891310 ~ 42911129 (-)
LOC110527797 hspb7 coding downstream 55705 42888618 ~ 42889492 (-)
cplane2 rsg1 coding downstream 57971 42884956 ~ 42887226 (-)
si:ch73-361p23.3 LOC106582621 coding downstream 99389 42842713 ~ 42845808 (-)
LOC110527803 LOC106582769 coding upstream 8143 42960419 ~ 42982836 (-)
LOC110527805 NA coding upstream 39171 42991447 ~ 43001777 (-)
LOC110527807 LOC106582772 coding upstream 51038 43003314 ~ 43027816 (-)
LOC110527806 LOC106582605 coding upstream 82366 43034642 ~ 43329567 (-)
LOC110527809 LOC106582795 coding upstream 476103 43428379 ~ 43433682 (-)
G610109 NA non-coding downstream 2672 42942126 ~ 42942525 (-)
G610103 NA non-coding downstream 8576 42936397 ~ 42936621 (-)
G610102 NA non-coding downstream 8939 42935956 ~ 42936258 (-)
G610101 NA non-coding downstream 9427 42935531 ~ 42935770 (-)
G610099 NA non-coding downstream 25662 42919213 ~ 42919535 (-)
G610132 NA non-coding upstream 32449 42984725 ~ 42985483 (-)
G610180 NA non-coding upstream 153754 43106030 ~ 43122712 (-)
G610182 NA non-coding upstream 158577 43107127 ~ 43162969 (-)
G610254 NA non-coding upstream 290923 43243199 ~ 43243449 (-)
G610356 NA non-coding upstream 401526 43353802 ~ 43354039 (-)
G610047 NA other downstream 109128 42835747 ~ 42836069 (-)
G608900 NA other downstream 919493 41968569 ~ 42025704 (-)
G608888 LOC106582750 other downstream 993953 41944571 ~ 41951244 (-)
LOC110527764 LOC106582736 other downstream 1596298 41156665 ~ 41348915 (-)
G610190 NA other upstream 160872 43113148 ~ 43116144 (-)
G610183 NA other upstream 175535 43127811 ~ 43167320 (-)
G610185 NA other upstream 199294 43151570 ~ 43157089 (-)
LOC110527812 LOC106582796 other upstream 483302 43435578 ~ 43439076 (-)

Expression


Co-expression Network