LOC110527804 (cssa22h3orf18)


Basic Information

Item Value
gene id LOC110527804
gene name cssa22h3orf18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42985660 ~ 42991364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983275.1
AGAGCTTCCTGGCTTTGATGGTATTGGTTCATGAAAGCGCGAGGGGCCAACATGCTGTGCTACGAGCTGCTTTCAAGGGTTTTGAGAAAGAGGCCGAGGGATATATCGAGTGGAATACCCTGAAGTATGTGTTGATGAATGTAGGAGAACCACTGAATGAGTTAGAGGCAGAGCAAATGATGGAGGCAGATAAAGATGGAGAAGGAAGCTTCGATTATGAAGGTAAGAGTAGATTAGTCTCTTTTGATTTTATCTTGCTGGATAAGGTTGAACAAATAACCTTTTTACCATTAAAAGCAGAACATTTTCTTCCCAGAATTTGGGAACATGATGACTGGAGGCTCCTTCAAGATGAGCTAAGTGAATCAAAGAAGGCAAACATGAATAGGCAACATTATATTGGTCAGGGTTGACAGTGTAGGTTACTGTTATGAACATCATGCTTCACCGGTTTTGATCATGCATGTTGATAAAACAAGACAATTGCTTTCAATGTTGGTCTTGAAGCATGCAGATGTTTATATTTGAATTCATATAACGATGTGGCCATTACTACCTTGTATGCTGACTGATTGACTTTTGATGTAAATATAGTAATTCATATGTATGATTTCTtaaaatgacaacaacaaaacatctgtACAACCTTAAGGTACTTACTATATGAATGAAAAGGGCTTGAGTGAAAGCACCTTGGCCTCACTGAGAATCTCCAGTCCCTTGCCTTTTTAGAGGATATTCATCAAAGGGTTACATTTCCAAGGCCAGCCACCCCCTCTGTCTGATAGCATCTGGTCTGCCCAACCAATAAATCCCATTCTCATCCCTAAAGCCAGATGGACAGCTCGGCGAGCCAACGGCAGCTGCCGCTTACACCCCATCCGACCTATCACAGGAGGGAAGGGGGCTTTGGATCACAGGGCTATGGTTGCAGAATCCCTGGAGCTTCTACTGTTATATGAAACACAACAAGGGGCAAGGTAGGGGAACAGGTCTAAGGAAGCAAGGAGAGATCGACAGAGAATCCTTTGGAAGCAGCCAGGGGTTGGGTTGCTTTGTATGGAGTGGAGCAGCGGTGAGAACGAATGTGTTTCCCATGTAAACAGCCCCTCAGTCAGTGGAGCAGCTGCCTGCGTTACTGCTGAGGAGCAGGGAGaagcagaagaggaggaggtgtagagaggGGGAAACGTTCCTTCTCCTTAAGATATTACGCCTCCTCTATCTTGTTGCCTCCTACGGCTCcttttaaatatttaaaaaaaaatagtgcTTCTCCTACCACATCGACGAAAGGTTCTGCCTGTAGAGTGTGTTCTGGTGTGCTCAATGCATTCCCAAAGCTTCAGTATACCTCAGTCCAGAGAGAGACAACCTGTGGCTGTTGTGACACACATGGGTGACTGAGATACAGAAAATAGACACATTGAGACACCCACAGCAGTGGAACACAACAAGACAGCTCTCTACATTCCTCGGTTGTTTAATCTCAGCTGAAACCATGGATTCGACCATGGCCAAAACCACCGCTAgctttctctccactgtctccagCATGACCCCCACCTCCATGACCTCCCTCCTCGCCGTTACCACGGACGCACGGATGGAACGGGACAATGTCACCGCATCCAGAACAACACTCATGACCAGTACCATTACTATAACAACAACCAACGAGACAAGCTACAACGCCACCAAGCTGCCAGAGGTGGCGTTAGAAGGCGCGGGGATGGGCATGGTGCTGGTGCCCTTTGGCATCATCACTGTAATTGGCCTGGCATTGGTCATGATGTTGTATATCAGGAAACGGAAGAGACTGGAGAAGCTGAGGCACCAGCTGATGCCCATGTATAACTTTGACCCTGCAGAGGAACAGGATGACCTGGAACAGGAACTACTGGACCACAACCGGGACGGCAACCTCACAGGATCCAATAACAAGACTCTCACAACCTCCCAGGGGACGACGCAGAGGCCCAGTCGCCTGGTCTTCACAGACGTAGCCAACGTTCTCAATGCATAACAGCACTCTTCCATGCATGAGAGGGGACTGGGGACAAGCTGTCCCATCATAGAGATCTGTCGCTCAGGGAAAAAAAAAGGAAAACTGGATTGAAGGCCATGGAAACAGACTGATGTTTGGTGTATGTTTTTTTTCAGGGTGGGCTATAAGGGAATTCTGATGTTTTAGTTGTGGGCGTAGTCTTATTTTCATTGTCTACAGTTTATAACTTGTCGTCAGTGACTGAGTTGGGAATTATGGGGAAACGATGCGAGTAATGATTTTGCACTGGTTGTTATTGGTTGCACAAATACTTCCAAGTGTGGTGCATTGTGGGATCGCTGTCTTTCTCTGCAGTTCTAGTGATATTGGTGGCAGAATTGCTGGAGCTCCCACCTCCTTCTCTAATGAGAACGTTGTCTcgaatgtattatttattttccaCACCTTTGTATTTTGCTGCTAAATGTAGACAACCACATTGGACAAGTGACTCCCTATAAAACGGATTATGCTCAATGTTGAACTGCTTCCATAATGGTGGTGGATTAGAGACTTGGACGTTCTGCACGTTGGAAAACTAGAAATCAGGACATCTGGAGAACTATTACTGCTGCAGGACAATTCCTGGGGAACTGTAACCCACCTAGTGTACACTACTATACTGTAATGTACCCACACACGTCCAAAATGTGTCCTTCAGCACTTACGCCTCTATGGGAACTCTCCATTTGCCATCAGAGTATTACTAGTAGTGTGTTTCCTCGATAACAAGTAATAAAGCAGCTGCATTGGTTTCTATACA
>XM_036983276.1
AGAGCTTCCTGGCTTTGATGGTATTGGTTCATGAAAGCGCGAGGGGCCAACATGCTGTGCTACGAGCTGCTTTCAAGGGTTTTGAGAAAGAGGCCGAGGGATATATCGAGTGGAATACCCTGAAGTATGTGTTGATGAATGTAGGAGAACCACTGAATGAGTTAGAGGCAGAGCAAATGATGGAGGCAGATAAAGATGGAGAAGGAAGCTTCGATTATGAAGCCAGATGGACAGCTCGGCGAGCCAACGGCAGCTGCCGCTTACACCCCATCCGACCTATCACAGGAGGGAAGGGGGCTTTGGATCACAGGGCTATGGTTGCAGAATCCCTGGAGCTTCTACTGTTATATGAAACACAACAAGGGGCAAGGTAGGGGAACAGGTCTAAGGAAGCAAGGAGAGATCGACAGAGAATCCTTTGGAAGCAGCCAGGGGTTGGGTTGCTTTGTATGGAGTGGAGCAGCGGTGAGAACGAATGTGTTTCCCATGTAAACAGCCCCTCAGTCAGTGGAGCAGCTGCCTGCGTTACTGCTGAGGAGCAGGGAGaagcagaagaggaggaggtgtagagaggGGGAAACGTTCCTTCTCCTTAAGATATTACGCCTCCTCTATCTTGTTGCCTCCTACGGCTCcttttaaatatttaaaaaaaaatagtgcTTCTCCTACCACATCGACGAAAGGTTCTGCCTGTAGAGTGTGTTCTGGTGTGCTCAATGCATTCCCAAAGCTTCAGTATACCTCAGTCCAGAGAGAGACAACCTGTGGCTGTTGTGACACACATGGGTGACTGAGATACAGAAAATAGACACATTGAGACACCCACAGCAGTGGAACACAACAAGACAGCTCTCTACATTCCTCGGTTGTTTAATCTCAGCTGAAACCATGGATTCGACCATGGCCAAAACCACCGCTAgctttctctccactgtctccagCATGACCCCCACCTCCATGACCTCCCTCCTCGCCGTTACCACGGACGCACGGATGGAACGGGACAATGTCACCGCATCCAGAACAACACTCATGACCAGTACCATTACTATAACAACAACCAACGAGACAAGCTACAACGCCACCAAGCTGCCAGAGGTGGCGTTAGAAGGCGCGGGGATGGGCATGGTGCTGGTGCCCTTTGGCATCATCACTGTAATTGGCCTGGCATTGGTCATGATGTTGTATATCAGGAAACGGAAGAGACTGGAGAAGCTGAGGCACCAGCTGATGCCCATGTATAACTTTGACCCTGCAGAGGAACAGGATGACCTGGAACAGGAACTACTGGACCACAACCGGGACGGCAACCTCACAGGATCCAATAACAAGACTCTCACAACCTCCCAGGGGACGACGCAGAGGCCCAGTCGCCTGGTCTTCACAGACGTAGCCAACGTTCTCAATGCATAACAGCACTCTTCCATGCATGAGAGGGGACTGGGGACAAGCTGTCCCATCATAGAGATCTGTCGCTCAGGGAAAAAAAAAGGAAAACTGGATTGAAGGCCATGGAAACAGACTGATGTTTGGTGTATGTTTTTTTTCAGGGTGGGCTATAAGGGAATTCTGATGTTTTAGTTGTGGGCGTAGTCTTATTTTCATTGTCTACAGTTTATAACTTGTCGTCAGTGACTGAGTTGGGAATTATGGGGAAACGATGCGAGTAATGATTTTGCACTGGTTGTTATTGGTTGCACAAATACTTCCAAGTGTGGTGCATTGTGGGATCGCTGTCTTTCTCTGCAGTTCTAGTGATATTGGTGGCAGAATTGCTGGAGCTCCCACCTCCTTCTCTAATGAGAACGTTGTCTcgaatgtattatttattttccaCACCTTTGTATTTTGCTGCTAAATGTAGACAACCACATTGGACAAGTGACTCCCTATAAAACGGATTATGCTCAATGTTGAACTGCTTCCATAATGGTGGTGGATTAGAGACTTGGACGTTCTGCACGTTGGAAAACTAGAAATCAGGACATCTGGAGAACTATTACTGCTGCAGGACAATTCCTGGGGAACTGTAACCCACCTAGTGTACACTACTATACTGTAATGTACCCACACACGTCCAAAATGTGTCCTTCAGCACTTACGCCTCTATGGGAACTCTCCATTTGCCATCAGAGTATTACTAGTAGTGTGTTTCCTCGATAACAAGTAATAAAGCAGCTGCATTGGTTTCTATACA
>XM_036983277.1
AGAGCTTCCTGGCTTTGATGGTATTGGTTCATGAAAGCGCGAGGGGCCAACATGCTGTGCTACGAGCTGCTTTCAAGGGTTTTGAGAAAGAGGCCGAGGGATATATCGAGTGGAATACCCTGAAGTATGTGTTGATGAATGTAGGAGAACCACTGAATGAGTTAGAGGCAGAGCAAATGATGGAGGCAGATAAAGATGGAGAAGGAAGCTTCGATTATGAAGGTAAGAGTAGATTAGTCTCTTTTGATTTTATCTTGCTGGATAAGGTTGAACAAATAACCTTTTTACCATTAAAAGCAGAACATTTTCTTCCCAGAATTTGGGAACATGATGACTGGAGGCTCCTTCAAGATGAGCTAAGTGAATCAAAGAAGGCAAACATGAATAGGCAACATTATATTGGTCAGGGTTGACAGTGTAGGTTACTGTTATGAACATCATGCTTCACCGGTTTTGATCATGCATGTTGATAAAACAAGACAATTGCTTTCAATGTTGGTCTTGAAGCATGCAGATGTTTATATTTGAATTCATATAACGATGTGGCCATTACTACCTTGTATGCTGACTGATTGACTTTTGATGTAAATATAGTAATTCATATGTATGATTTCTtaaaatgacaacaacaaaacatctgtACAACCTTAAGGTACTTACTATATGAATGAAAAGGGCTTGAGTGAAAGCACCTTGGCCTCACTGAGAATCTCCAGTCCCTTGCCTTTTTAGAGGATATTCATCAAAGGGTTACATTTCCAAGGCCAGCCACCCCCTCTGTCTGATAGCATCTGGTCTGCCCAACCAATAAATCCCATTCTCATCCCTAAAGCCAGATGGACAGCTCGGCGAGCCAACGGCAGCTGCCGCTTACACCCCATCCGACCTATCACAGGAGGGAAGGGGGCTTTGGATCACAGGGCTATGGTTGCAGAATCCCTGGAGCTTCTACTGTTATATGAAACACAACAAGGGGCAAGGTAGGGGAACAGGTCTAAGGAAGCAAGGAGAGATCGACAGAGAATCCTTTGGAAGCAGCCAGGGGTTGGGTTGCTTTGTATGGAGTGGAGCAGCGGTGAGAACGAATGTGTTTCCCATGTAAACAGCCCCTCAGTCAGTGGAGCAGCTGCCTGCGTTACTGCTGAGGAGCAGGGAGaagcagaagaggaggaggtgtagagaggGGGAAACGTTCCTTCTCCTTAAGATATTACGCCTCCTCTATCTTGTTGCCTCCTACGGCTCcttttaaatatttaaaaaaaaatagtgcTTCTCCTACCACATCGACGAAAGGTAGGTACTGACATAACATATACCCCTAATCTGGGAGGGCATTTAAGGCGAGCTTGCATGTCACGTTGGCAGGATTAAAagcctttatttatttatactcATTGGCTTACAGAGGAATGATCACTGTGCAACAACATTCCATGGTGTGAATAAGACTAAGAGATAAACATGTTACATTATGAACATTTTATGTTGACTGTCTTTGCACTGTATTTGATCTCTAATTGGACAGTGACAAAGGCTGAGACTTTGCTCTTGGTTTTGATTGGTTGAGAGCTTGCACTGCACATGTTCCTCATTTGGTGAACAGACTGGCATGCAGGCAGGCTGCATTCTGAGGGGGGCGGGACCCGGGATGGCTCATGTGTCTTTGTTTTCACGGTTTGTGTGACACTATAGTAGGGTGCCATGTCTGCCAGGCATGTCTGCCATACTATCGGCCAACAATATACATGGCATAATTCAGCATTTCATTACATTAACCCTCTAATTATATCTTATGAAGGCTTAATGAAGCCTTCACAAGCCCTTTATAAAGTCTATATAGATCCATGTCTGGGGGTTTGTTTTCCTCTGTATTGTATCTGCTTTGTTCTGACACCGTTTTCTCTGCTTCTGATGCCCACATCCTGCCCACAACACTACCTGCTGCCCTGTCGGGTTCAATCTGATGGAATCAGGGGTGGGGACGTATATGCTTTTACCTACTTCTACAAACACATACTTTTACGTAGCGAAATTCTAGTCATGTCATGAGCACTGTGACAAACAGACACGATTATTTTGCATTTAGTTTAGTAGTTATGGATGATGCATCTTGGTGGCAGATTGTTTCGTCATTTTAGATCAAGATGCACACCTGACTAATTTCGGCAGGTGACCAGAGGCTTTGCCTTTATTTATATAATCAGAATGAAAATCCCCTCCTGTTTGACAAATGTGTCCCTCAGACCTCAAACATGCTACCCACCTAAACCTCTTCCCACTCTTTCCAAACCGTTTGCGGAAGGAAGGATGTTTGTGGcctgccatacacacacacacacacacacccaaaaccAACCTCCAACCAAACCAGAGCCATATGATATGCTATTGTAGTGTGCATAATATGTCTGTTTGTTTTCTGATCTGAAGGTGTAAAATTATCCGTTTCAGGTTCTGCCTGTAGAGTGTGTTCTGGTGTGCTCAATGCATTCCCAAAGCTTCAGTATACCTCAGTCCAGAGAGAGACAACCTGTGGCTGTTGTGACACACATGGGTGACTGAGATACAGAAAATAGACACATTGAGACACCCACAGCAGTGGAACACAACAAGACAGCTCTCTACATTCCTCGGTTGTTTAATCTCAGCTGAAACCATGGATTCGACCATGGCCAAAACCACCGCTAgctttctctccactgtctccagCATGACCCCCACCTCCATGACCTCCCTCCTCGCCGTTACCACGGACGCACGGATGGAACGGGACAATGTCACCGCATCCAGAACAACACTCATGACCAGTACCATTACTATAACAACAACCAACGAGACAAGCTACAACGCCACCAAGCTGCCAGAGGTGGCGTTAGAAGGCGCGGGGATGGGCATGGTGCTGGTGCCCTTTGGCATCATCACTGTAATTGGCCTGGCATTGGTCATGATGTTGTATATCAGGAAACGGAAGAGACTGGAGAAGCTGAGGCACCAGCTGATGCCCATGTATAACTTTGACCCTGCAGAGGAACAGGATGACCTGGAACAGGAACTACTGGACCACAACCGGGACGGCAACCTCACAGGATCCAATAACAAGACTCTCACAACCTCCCAGGGGACGACGCAGAGGCCCAGTCGCCTGGTCTTCACAGACGTAGCCAACGTTCTCAATGCATAACAGCACTCTTCCATGCATGAGAGGGGACTGGGGACAAGCTGTCCCATCATAGAGATCTGTCGCTCAGGGAAAAAAAAAGGAAAACTGGATTGAAGGCCATGGAAACAGACTGATGTTTGGTGTATGTTTTTTTTCAGGGTGGGCTATAAGGGAATTCTGATGTTTTAGTTGTGGGCGTAGTCTTATTTTCATTGTCTACAGTTTATAACTTGTCGTCAGTGACTGAGTTGGGAATTATGGGGAAACGATGCGAGTAATGATTTTGCACTGGTTGTTATTGGTTGCACAAATACTTCCAAGTGTGGTGCATTGTGGGATCGCTGTCTTTCTCTGCAGTTCTAGTGATATTGGTGGCAGAATTGCTGGAGCTCCCACCTCCTTCTCTAATGAGAACGTTGTCTcgaatgtattatttattttccaCACCTTTGTATTTTGCTGCTAAATGTAGACAACCACATTGGACAAGTGACTCCCTATAAAACGGATTATGCTCAATGTTGAACTGCTTCCATAATGGTGGTGGATTAGAGACTTGGACGTTCTGCACGTTGGAAAACTAGAAATCAGGACATCTGGAGAACTATTACTGCTGCAGGACAATTCCTGGGGAACTGTAACCCACCTAGTGTACACTACTATACTGTAATGTACCCACACACGTCCAAAATGTGTCCTTCAGCACTTACGCCTCTATGGGAACTCTCCATTTGCCATCAGAGTATTACTAGTAGTGTGTTTCCTCGATAACAAGTAATAAAGCAGCTGCATTGGTTTCTATACA

Function

NR:

description
uncharacterized protein C3orf18 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983275.1 False 2810 mRNA 0.46 6 42985660 42991364
XM_036983276.1 False 2200 mRNA 0.48 7 42985660 42991364
XM_036983277.1 True 3968 mRNA 0.45 5 42985660 42991364

Neighbor

gene id symbol gene type direction distance location
rbp7b LOC106582767 coding upstream 50412 42932983 ~ 42935248 (+)
LOC110527799 LOC106582765 coding upstream 55026 42923547 ~ 42930634 (+)
LOC110527794 LOC106582762 coding upstream 101980 42854920 ~ 42883680 (+)
gnat1 LOC106582761 coding upstream 218264 42760386 ~ 42767396 (+)
LOC110527789 LOC106565988 coding upstream 226256 42685145 ~ 42759404 (+)
LOC110527808 ab14b coding downstream 36560 43027924 ~ 43035211 (+)
LOC110527818 NA coding downstream 533323 43524687 ~ 43526668 (+)
LOC110528952 NA coding downstream 535567 43526931 ~ 43529047 (+)
mon1bb LOC106582805 coding downstream 545633 43536997 ~ 43545817 (+)
si:dkey-183j2.10 LOC106582807 coding downstream 576296 43567660 ~ 43582311 (+)
G609487 NA non-coding upstream 1515 42983706 ~ 42984145 (+)
G609506 NA non-coding upstream 23565 42960420 ~ 42962095 (+)
G609512 NA non-coding upstream 31709 42953672 ~ 42953951 (+)
G609440 LOC106582768 non-coding upstream 33421 42945229 ~ 42952239 (+)
G609511 NA non-coding upstream 42564 42942731 ~ 42943096 (+)
G609484 NA non-coding downstream 86 42991450 ~ 42995182 (+)
G609533 NA non-coding downstream 18180 43009544 ~ 43014662 (+)
G609532 NA non-coding downstream 26530 43017894 ~ 43020900 (+)
G609542 NA non-coding downstream 56513 43047877 ~ 43049711 (+)
G609573 NA non-coding downstream 115551 43106915 ~ 43167294 (+)
G609436 NA other upstream 164415 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1154852 41827211 ~ 41830808 (+)
G607904 NA other upstream 1522491 41462824 ~ 41463169 (+)
G606977 NA other upstream 2351221 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 2545028 40438879 ~ 40457742 (+)
G610436 NA other downstream 419027 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 592656 43584020 ~ 43584896 (+)
G610622 NA other downstream 837640 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 1011260 44002556 ~ 44035143 (+)
G613664 NA other downstream 3287370 46278734 ~ 46279333 (+)

Expression


Co-expression Network