LOC110527809 (LOC106582795)


Basic Information

Item Value
gene id LOC110527809
gene name LOC106582795
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43428379 ~ 43433682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609333.2
GGACTCGCACTAGGGAGGATTTGTTTAAAATTAACCCACTAGGGTAGGAATAGGCGTTGGGTGCAACTGAATTGACACCAGTACAGGGGGGTACGGTACATTCACTGTCGGTTCAAGTTGTAAAGTACAGTAATAATACATTCAAGTGACCAATGAAGTACCAGTGTTTTTACCTATTGTTGCAGGGATCACTTAACCAGGTAGTTATTGGGAGAAGTTTGTTTCAATCACCTTTCTCCATCTTGAAAGACAAACGTGGCTTAATTGGAATATAGGGGTCTCTAGTATTTGGGTATGCTTCCTCATTCTGCTGTACAAGgacaggagagcagagagtaaAAAACACATTCATTCACCACAAAAGTCATGTTGTACTGGACTGCACTGCCTGATTGGAAAGTATTGCTGTTGGTGACACTTCTATGGGACTACCTCTGTGCTGAGGAACTGAAACCCACGAGATGGCCACTGTATCCCCAAAAGCCTCTGGTCATGGCCTGGAATGCTCCGACGGAGGACTGCGGCCCGCGGCACGGTATTCACTTTCAGCTGGAGCAGTTCCAGATTGTGGCATCGCCCAGCAAGGGCTTTGTCCGCCAAAACCTCACCATCTTTTACAAGGACCGCTTGGGGTTGTACCCCTATTATAAGGAGCACGATGGTGCTGTCATGAACGGTGGGCTCCCGCAGGTTGCCAGTCTCACTCAGCACCTGGAGAAGATGCCGGAGGGTATTCAGTATTACATACGCGAAGCAGGGGCCAAGGGACTGGCAGTTATTGACTGGGAGGAGTGGAGACCACTGTGGATCCGCAACTGGGACGTCAAGAATGTGTACCGCAACCAGTCAAGGCAGCTGGTGGCCCAGAAGAACCCAGCCTGGCCCGCAGAGCGTGTGGCTAAGGTGGCCCAGCAGGAGTTTGAGATGTCAGCCCGGAAGTTCATGCTGGAGACCCTGAGGCTGGCTAAGAGCCTGCGGCCCAACCAGCTGTGGGGGTTCTACTTGTTCCCAGACTGCTACAACCACGACTACAGGAACACTCTGGAGAACTACACGGGCCGCTGCCCTGACGTGGAGGTGGCCCGGAATGAAATGCTCAAATGGCTGTGGATGGAGAGCACAGCCCTCTTCCCCTCGGTCTACATGGGCACGGTGCTGCGCTCTTCGCCCTCGGGGCGGCAGTTTGTCCGGAACCGGGTGAAGGAGGGGATGCGTCTGGCGTCAGGGGGAGACGGGCTGGCACGTCCTGTCTTTGTGTACGCCCGGCCCACCTATTCCAACGTACTGGAGCTGCTCACAGAGACGGACCTGGTCTCCACCATCGGGGAGAGTGTGGCTCTTGGGGCCGCAGGCATCATCCTCTGGGGAGATCACGcttatgccagcagcaagGCCAGTTGCTCTAGTCTGAATGAGTACCTACGGGGTCCGCTGGGCCGGTACCTGCTCAACGTTACCACGGCAGCAGAGCTGTGCAGCCAGACGCTGTGCGATTCCCTTGGACGCTGCCTGCGTAAACACCCTGACACTGATGCCTACCTGCACCTCAGCACCCGCACCCACAGAATAGAGCCCCTAGCAAATGGAAAACTCAAGGTTCAAGGTCAGCTTGGGGAAGACGACATATTGGGCTTTCAGAGGGAGTTTCAGTGCCAGTGCTATAGTGGCTACCAGGGAGAGGGCTGTGGCCAGAGAGACCCCCAACAACAACGAGGCGTCGCAGCTCCAATCATGGCGTCATGGGTGCACTGTTTGCTCCTGCTACTCATCACACTCCTGCTCTGAGTGCAAACAGTACATCCACAGGCATACAGCTACATTCAAATAATTGGACGTGTACTGGTATACACATGACATTATCTACACACATGCGCAAACATTATAGAAATACACTTTGGGGCAAATGTATTCACTGTGGTCCAGATTGCTGTAAGGTTGGTGGGTCTATGTGGAACACTGAGTTATGTGGCTGTTTGTGTGTTGATTTGTTTCCCATACATTGGAGGGCTCGCTGGAAATAACTTTGTTTACATTGATCTCTTTCTCAGTCTCCTTCCCACAATAtatctctctcaacccctcccccctctttcaaGGTGTCATTTTCTCATGATCCCAAAGTTGATGTTTTTGTGTGGAAATGTGTGTTGTTTTCAGATGTGCTTCTGATGTATGTACGGTTTTGTGTTATGTGTGAGCCAAAATGGGGCCGATGCACTTGATTCTTGGAATAGCACAAAATAGTTCTTATCGCCTGACCTCTGACATTTTATCTTTAGGTTTCAATATTTATATTAATGTATTTTCACATTTGTTAAAAAGCTTTTATTTTATGGCAAAAACAAGACTACTATTTTCGCTCTAAAATTGTGCTTCTCCCTTACTGTGTACAATGTTTCAATCACTCAAAATAAATCAAAGCTGTAATTAAGTGATACTGCCAGAGAAGcctgtgtttggaggatatattggcacaggtgtTGTTCCATCAAGGGCctgcaaaccgtgccaatatatcctccaaacaccagcttcgagggcattatcacttttatacaacgggttaccaacatattcaaataatgagtgacatattttaattaaaaatgttattttgatgaa

Function

NR:

description
hyaluronidase-2-like

GO: NA

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609333.2 True 2622 mRNA 0.49 4 43428379 43433682

Neighbor

gene id symbol gene type direction distance location
LOC110527806 LOC106582605 coding downstream 98812 43034642 ~ 43329567 (-)
LOC110527807 LOC106582772 coding downstream 400563 43003314 ~ 43027816 (-)
LOC110527805 NA coding downstream 426602 42991447 ~ 43001777 (-)
LOC110527803 LOC106582769 coding downstream 445543 42960419 ~ 42982836 (-)
LOC110527802 LOC106582768 coding downstream 476103 42945197 ~ 42952276 (-)
LOC110527812 LOC106582796 coding upstream 3198 43435578 ~ 43439076 (-)
LOC110527811 LOC106582799 coding upstream 5532 43439214 ~ 43458193 (-)
zmynd10 zmynd10 coding upstream 23713 43457395 ~ 43466285 (-)
cish cish coding upstream 53411 43487093 ~ 43491299 (-)
LOC110527813 LOC106582800 coding upstream 59204 43492886 ~ 43506472 (-)
G610453 NA non-coding downstream 4397 43423639 ~ 43423982 (-)
G610448 NA non-coding downstream 6355 43421810 ~ 43422024 (-)
G610439 NA non-coding downstream 15774 43412365 ~ 43412605 (-)
G610428 NA non-coding downstream 21481 43405983 ~ 43406898 (-)
G610403 NA non-coding downstream 41070 43387084 ~ 43387309 (-)
G610492 NA non-coding upstream 16519 43450201 ~ 43450487 (-)
G610495 NA non-coding upstream 19433 43453115 ~ 43453406 (-)
G610500 NA non-coding upstream 36024 43469706 ~ 43469914 (-)
G610502 NA non-coding upstream 37280 43470962 ~ 43471240 (-)
G610183 NA other downstream 261059 43127811 ~ 43167320 (-)
G610182 NA other downstream 265410 43107127 ~ 43162969 (-)
G610185 NA other downstream 271290 43151570 ~ 43157089 (-)
G610190 NA other downstream 312235 43113148 ~ 43116144 (-)
G610047 NA other downstream 592310 42835747 ~ 42836069 (-)
LOC110527816 LOC106582802 other upstream 93009 43526691 ~ 43537037 (-)
G610570 LOC106582807 other upstream 145411 43579093 ~ 43579964 (-)
G611674 NA other upstream 1051173 44484855 ~ 44485752 (-)
G613411 LOC106582852 other upstream 2441283 45874965 ~ 45875700 (-)

Expression


Co-expression Network