LOC110527818


Basic Information

Item Value
gene id LOC110527818
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43524687 ~ 43526668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110527818
actagctagttagcgatACCGTCTTCTAGCTAGCATGCAAGTTAGCTAGCACACGGGTGTCACCACAGATTTGGTGTCGCTTCCCACCTGCTGTGTACAGGACTAGCTGGCTAAGCTAGCACAGTGTCCTTCGGTCCACCTGCCTTTGCCGTCGTTAACAGATCTGTAGGAAAACAGTGCCCGACATGCGGGGACGAAGGACACTGTCCACCAGCGtacggctagctagctaccattgtCACCTCGCCCCTTCTTCAGTGGGGTTTATTGGTGGCTGGCATCCAACGTTATTGTGCAACGTtaacgccacctactgtactggagcacCCCCGCCTCCCACAGCTTAAATAAATGACCAATAGATGTATAAAGAGGGGTTCCTGCAGATGCAGGAATGCCCCAAATTGCAGGCCGCAATTGCACCATTCTCGCCCCTCTTGATGTTAGAGTTATAAGTGAAAGAGGTTTGAACATTAACCACTCATTCACACCACAAGGTGGCACAGGTGGCCCTGTCCTCATTACAAAGCCAATATTTTATACCAATTAGCTCAAACTGAGCAGCACTGCTGTTGGGTTGACCCTGTATAGTCCCTGATTGTACAAAATCATCTGAAGACAAACACAGCCTGCTCACTTTTTTCTGCCTTATGGTCAAGCTTGAGTCAATCATTACACGGAGGGTACACATTCAACTTGAGTTGAGCTCTTTACAGATTTTGCGACACTGCCTTAGTGCTGATCCTGACTCTGCAAGTACACAGCTCTCACACAGAGGAAATCCAGAGGTTCCCCATACCCTGTGTAGGCAACCTCACTAGGATTCTCTCATAATGACTTGAGTCTTGTCAACTAAATGCTGAGTGAATATGTGGTTATCTGATGTGGTGTGTGGGCATCTCAAGGTAAGGGACAGAAGGTCAACTAGTAGGCCCCTTTGTCTCTATCTGGAATCTCTTGGGTGTGTCTTTTGGTGTGCACATACAAAAAATGACCAGTAAAATCACAACAGCAGAAACATCAAAGGGGGCCCTGTGATCCATAAACTTAGTTTTGGCTTTGTTCTCCCTGATAGGACAGCCTGATGGCTCGTGTTCTGTCCCTGCATCGGCCTTTGTCTTTACTGGCCCTTGTGGGGGTAAGGGGATCCACGGTTTTCAGACATGCGGGCACGGGAGATGTTTGCTACAGGTGTGCAACCAGACATTGTGGTGCGGCGGAGTCTGGAGCGTACAGGGGACACCTTCCTAGTGAATGGCCACAGCTTCACGCTCAGAAACAACCTTCACCTTGTGGGCTTTGGCAAAAAATGTTTTAGGTATGGCTGCAGAGGCAGAGAGGATTGTGGGAAACCACTTGGTGATAGTGAGTGCCACACGGGATAAAGGAGACATTACAGCAGCATGGGAAAGAGTAAGCAACTCAAACAAGTGTTTGTGGGATGGAAGTCGGATCACAGTGATGGAGGGAGCTAAACACAACCTGCCAGATGCTGATACTGATGCCCAGGGAGCAGCCAAATGTATCAAGAGGCTGGCCAGCACACTGACAGAATGAGCTGTTGCTTGTACTAATTTCAGGTAAATTGATACCTAACTCCTACCACAATTTAATTGTTGAACAAACTATATAATTATTACTTAATTTGAATCACTGAAGCTACAGGGTGTCCATAAATATCTTTgaagcccagtgcagtcaaacacttgattttactgtattttatacaTATTTCACACTATGAACTTGGAGTAATACTGTTAAATTGTGAAAATAGCATAATGCccatttagtgtaagagctgtttgaaaagactgccttaAATGTCCACCTGTTTTGACCGATGGTGACATCACTGTGCAATAAATTAGCTAGACCAATGAGAAATAGTTCAAAACTATGCCAAT

Function

NR:

description
PREDICTED: glycerate kinase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110527818 True 1907 mRNA 0.46 2 43524687 43526668

Neighbor

gene id symbol gene type direction distance location
LOC110527808 ab14b coding upstream 489476 43027924 ~ 43035211 (+)
LOC110527804 cssa22h3orf18 coding upstream 533323 42985660 ~ 42991364 (+)
rbp7b LOC106582767 coding upstream 589439 42932983 ~ 42935248 (+)
LOC110527799 LOC106582765 coding upstream 594053 42923547 ~ 42930634 (+)
LOC110527794 LOC106582762 coding upstream 641007 42854920 ~ 42883680 (+)
LOC110528952 NA coding downstream 263 43526931 ~ 43529047 (+)
mon1bb LOC106582805 coding downstream 10329 43536997 ~ 43545817 (+)
si:dkey-183j2.10 LOC106582807 coding downstream 40992 43567660 ~ 43582311 (+)
ppcs ppcs coding downstream 437809 43964477 ~ 43966869 (+)
si:dkey-264d12.5 LOC106582817 coding downstream 475888 44002556 ~ 44035143 (+)
G610528 LOC106582801 non-coding upstream 9944 43513765 ~ 43514743 (+)
G610517 LOC106582800 non-coding upstream 26962 43495012 ~ 43497725 (+)
G610512 cish non-coding upstream 35703 43486861 ~ 43488984 (+)
G610477 NA non-coding upstream 69084 43455337 ~ 43455603 (+)
G610476 NA non-coding upstream 69696 43454628 ~ 43454991 (+)
G610545 NA non-coding downstream 25662 43552330 ~ 43560669 (+)
G610564 LOC106582806 non-coding downstream 58580 43585248 ~ 43586231 (+)
G610627 NA non-coding downstream 96928 43623596 ~ 43673775 (+)
G610622 NA non-coding downstream 303170 43829004 ~ 43831880 (+)
G610764 NA non-coding downstream 340534 43867202 ~ 43872623 (+)
G610436 NA other upstream 113881 43410391 ~ 43410806 (+)
G609436 NA other upstream 703442 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1693879 41827211 ~ 41830808 (+)
G607904 NA other upstream 2061518 41462824 ~ 41463169 (+)
G606977 NA other upstream 2890248 40634181 ~ 40634439 (+)
G610563 LOC106582806 other downstream 57352 43584020 ~ 43584896 (+)
G613664 NA other downstream 2752066 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 3105454 46629591 ~ 46638492 (+)

Expression


Co-expression Network