LOC110528952


Basic Information

Item Value
gene id LOC110528952
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43526931 ~ 43529047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110528952
ATGCCCTCGTTATTGAAGGGAGGAGGACTTGTGGTGGCCCTGGTTCTGTCTGATGTAATCTGAGATCCCCTGGACTTAAAAGCCCAGCGGCCCCATATTGTAGACTGAGGCGTGGCCTCAGGAGATTTGGTCGGTGCTGGACCGCTATGGGCTAATCGcagcctctctccccacctcagTCAAGCAGGTCCCTGGACACTCAGCTCCCCGGTGGGAGGAGGCTGGAGAGCAGTCAGACAGGGTGGCATATGTTCTCAATGCTGTGATTGGCTCCAACAGTATTGCTCTGGAATGCGCAGGGCGACGTGCAGGGGAGCTTGGATTCCGTCCAGTTGTGCTGTTGTGGGGACGTACAGTCTGTCTCGCCTTTATGGTCTACTGGCTCACTTTGCCTGCTCCCGTGACGAGCCCCCTCCTGAGTTGCCTGTTGAGATTCTGAAGCTGGGGCCCGAGATGGGCGTGGTGAGTTGGGATTTGTGCCGTGCTATGCAGGTGCTTGGCgtggggagggatggggagcCACCGTATGCTGGCTGGGGGAGAGCCCACTGCGCAGTTGACAGGCAAGGGGCGTGGTGGGCAGAACCAAGAGCTAGCCCTGCGAgtggggctggagctgggaggCTTGGCACTCCCTCCGAAGGGTCCCCTGTTCCTGCGTGGTGGGACAGATGGTCAAGACGACCAACTGAGGCAGCAGGGGCGGTCATAGACGCAGGGCTTGGAGAAGAAGCACGAGCACAGGGGCTGGACACTGAGGCATCCTCATTAACAATGATTTCTTCACCTTTTCACACCTGTCTGGTGGGCAGTGACTGCTCCTACCAGGGTTAATGGGTACCAATGTGAGGGATGTGTACATCCTGCTCATCCCACCAATCCCCATAGTCGTGTCTGGTGAAGACGAGGGCCTGAAAGCAGCTAAGCACACATTTCAGTATGAATCCATACTGAGTAGACTTAAATATATTCAGAGCTCAGCTTTTCAAAGTTGACCTTGCCAATTATACCCCTTTCCAGCAAGCCCTTCTGGAAGTCCACGTTTAATTTAAAAAAGTCGCAGTCAGCTATGTCTAATGAATAGCGTAAATTGCTTACTTTTTGGTTATTTGTGGAGAGTGTTCTTGTACAGAGCAATCGTGGGTTGTGTGCTGGACATCGTATTAgagaatgatttttttttttttaaactaaatgtGACTTTAATCAGAAGACAGCCAGAGGCCTCATGCATTTGCTCCTTCTCAGTATGGAGGTTCCAGCCATAGAGGGGTGTACAACGACTATAATAAGGTGAGTCTGTCTAGAAAAAGAAATCAAGAGTTCGAGGGGAGCTGCCATTTGATGTAAGGCTTCTATCTCTGACCACTTTCTCCACAGTAGTCTTGCTCCAGCGCACTCTTCGTGGATTACTATGTAGCCTTGCTCCAGTGGAAATAAAAACCGCTCCTTATTCATACAATAATATGTTATGGACATAACAGCAGTCACAACTCACAGCAGTTGTCAAGTCTTTTCAGATTCTGTCTACCGGTAGATTAGAATAACATTTCAGTTCAATCTACAACCAATCAGAGGACATAGACTTGGATAGATATTTTAATGGCTCACCAATCAAAGGCGGTAAAAAATGTACATAAGCTTCATTTTAAAATATGAGATTTAAAAAGATATGACATATGAGAGAATATCTTCGCTTATCGCATGGTGTGGCTGTCTGGATGTAAACTGAGCCTGATTAGTTACCCCTTCATGACAACCGTCCGGGAAAAAGTAATTTTTCAGCGTAGAGTAAGGAAGCGTCTGCAGGCCCACCTCATCGATGAACTCCAGCCCATTTGAAAAGGCACAACATATCAAGTCTGTGTCCACTCAGCAGCACTGTCTGATTCGACCGAGAACAAGTAGAATGTAGTCCAACTTGTTATGTCCCGTCTGTCACTCACGGTGTGTCTTGATGGTGTC

Function

NR:

description
glycerate kinase isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110528952 True 1965 mRNA 0.49 2 43526931 43529047

Neighbor

gene id symbol gene type direction distance location
LOC110527818 NA coding upstream 263 43524687 ~ 43526668 (+)
LOC110527808 ab14b coding upstream 491720 43027924 ~ 43035211 (+)
LOC110527804 cssa22h3orf18 coding upstream 535567 42985660 ~ 42991364 (+)
rbp7b LOC106582767 coding upstream 591683 42932983 ~ 42935248 (+)
LOC110527799 LOC106582765 coding upstream 596297 42923547 ~ 42930634 (+)
mon1bb LOC106582805 coding downstream 7950 43536997 ~ 43545817 (+)
si:dkey-183j2.10 LOC106582807 coding downstream 38613 43567660 ~ 43582311 (+)
ppcs ppcs coding downstream 435430 43964477 ~ 43966869 (+)
si:dkey-264d12.5 LOC106582817 coding downstream 473509 44002556 ~ 44035143 (+)
LOC110527834 LOC106582821 coding downstream 556818 44085865 ~ 44092535 (+)
G610528 LOC106582801 non-coding upstream 12188 43513765 ~ 43514743 (+)
G610517 LOC106582800 non-coding upstream 29206 43495012 ~ 43497725 (+)
G610512 cish non-coding upstream 37947 43486861 ~ 43488984 (+)
G610477 NA non-coding upstream 71328 43455337 ~ 43455603 (+)
G610476 NA non-coding upstream 71940 43454628 ~ 43454991 (+)
G610545 NA non-coding downstream 23283 43552330 ~ 43560669 (+)
G610564 LOC106582806 non-coding downstream 56201 43585248 ~ 43586231 (+)
G610627 NA non-coding downstream 94549 43623596 ~ 43673775 (+)
G610622 NA non-coding downstream 300791 43829004 ~ 43831880 (+)
G610764 NA non-coding downstream 338155 43867202 ~ 43872623 (+)
G610436 NA other upstream 116125 43410391 ~ 43410806 (+)
G609436 NA other upstream 705686 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1696123 41827211 ~ 41830808 (+)
G607904 NA other upstream 2063762 41462824 ~ 41463169 (+)
G606977 NA other upstream 2892492 40634181 ~ 40634439 (+)
G610563 LOC106582806 other downstream 54973 43584020 ~ 43584896 (+)
G613664 NA other downstream 2749687 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 3103075 46629591 ~ 46638492 (+)

Expression


Co-expression Network