brpf3a (LOC106582804)


Basic Information

Item Value
gene id brpf3a
gene name LOC106582804
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43545876 ~ 43572323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609344.2
TTCAAGCCATCTTGACTGAATATCTAGCTACATcccaaggtagctagctagctacatcaaTCTGACACATCTTACGTTATTGTATGTGCCATTTAGAGTAGCCATTTCAAGTTGAAGACGTCTAAATCACAGATATGTAAGCAGGTCGAGTTTGAGCATTTTGTCCGAAGTCACCATGGAGGACTGAAGTGCTGAAGATGACGCTGTCGCCCCTGAAATTACCGGGTAGCAATGGCATAGCTTGTTACTAGCATGTCGGTCGTATTtcaacgttagttagctaacgttatcttTCTCTGGCTCGCGCATGTCATAGGATCACGTTAAACAAGGAAACTAGACCCCCATGAGGAGGCTGCGGAGGCGGGGATGCAGTGCTGGAGAAGTTGGGCTTGAGATGGGCCGGGGCCGGGGAAGGGGAAGGGGCAGGGTCTCCAGTGTTCGGCCGCGGCCGCCTTCCCCCTACAGACTGCAACTATCTCCATCTAGAGAGACTTTGACCTatgctcaggcccagaagatggTGGAGGTGGACCTGGATGGAAGGCTTCACAGGATCAACATCACAGACCCTCTGCCAGTCATCACAGAGGACGAGATGATGGCTCAGGACATTGTTGAGTGCAACAGTAACAAAGAAAACAGCGAACAAACCCAGAGCAGAGCCAGACCAGGGCGCAAACCTCCCAACCCAAAGGGCCGCAGGAGGGAGAGCAAAACCTCATCTCACCTGAGCCGACGTTCTGGCGGTCAGCAACACACGCAAAGCCAAACCGATCCTTCCCAGCACCCTTCCCACCAAAGCCCTCTCCCTGAGCCCACCTTCCGCGTGCTGGACTCCCTGTGTCCTTCAGCCGCACCTCCCCTCCCTGCGGCCTACTACCGGTTCATAGAGAAGTCAGGAGAGGAGCAGGACTGTGAGGCAGAGTACGACATGGACGAGGAGGACCTGGCCTGGCTGGAGATGGTCAACCAAAAGAGGGTGTCTGATGGCCACGCCTCCGTCTCCCCGGATACCTTTGAGCTGCTGATCGACCGTCTGGAGAGGGAGTCCATCCTGGAGTCACGGAGCCAGGCCCTGTCCCAGAGTGCCATAGACGAGGATGCCTTCTGCTGCGTCTGCCTGGACGACGAGTGTCTCAATAGCAACGTCATCCTGTTCTGTGACATCTGCAACCTGGCCGTCCACCAGGAGTGTTACGGTGTTCCCTACATTCCTGAGGGCCAGTGGCTGTGCCGCTGCTGTCTGCAGTCCCCCTCGCGCCCCGTGGACTGTGTGCTCTGCCCCAACCGGGGAGGTGCCTTCAAACAGACTAGTGATGGACGCTGGGCCCACGTAGTCTGTGCCATATGGATCCCAGAGGTGTGCTTTGCCAACACGGTGTTCCTGGAACCCGTAGAGGGGGTGAACAACATCCCCCCAGCCCGTTGGAAGCTCACCTGCCACCTGTGCAAGCAGAAAGGCTGGGGCGCGTCCATCCAGTGCCACAAGGCCAACTGTTACCGGGCCTTCCATGTCACCTGTGCCCAGAAGGCTGGCCTCTTCATGAAGATCGACCCGGTCCGAGAGACCGGGGTCAACGGAACCACCTTCTCTGTAAAGAAAACTGCCTTCTGTGAGAATCACTCCCCGGTCGGGTTAAGGCGAGATGGGTCTGGTGATGTGGaggggaggctggtgggaggaagggggaacagaggtcaaaggtcatacACTCAGAGCCCCTTGGCCCTACCCAGTAAAAAGACTCCCAAGggccagaagaagaagaaaggtcAGACGACCCGTCGCTCCGCTGTGCCTGTGCTGCTGGTGCCTCAGATCCCCTCTCACAGGCTGAACAAGATTTGCACTGGTGTTGCTGTCCAGAGGAAGAACCAGTTCATGCAGAGGCTTCACAACTACTGGCTGCTGAAACGTCAATCCCGAAACGGCATGCCTCTCATCCGGCGCCTGCACTCGCATCTGCAGGCTCACAAGACTGCTGAGCAGAGGGAGCCTGATGAGAAGCTTAGTGCGGCAAGGGAGGAGCTACGGTACTGGCAGAAGTTGCGGCAGGACCTGGAGAGAGCCCGGCTCCTGGTGGAACTCATTCGCAAGAGAGAGCGACTAAAGAGAGAGCAGATGAAACTTCAACAGGCTGCTCTGGAGCTGAAGTTGACCCCTGCGTTAATACTGCTGCGCTCCACCCTCGACCAGCTTCAGGAGAAGGACACGGCACAGATCTTCTCTCAGCCTGTGAATCTAGCAGAGGTCCCGGACTATCTGGAGTTCATCTCCAAGCCCATGGACTTGTCCAGCATGCGTGCCAAACTGGAGGCCCATGCTTACTGCTCCATTGCAGACCTGGAGGGCGACTTCAACCTCATGGTGTCCAACTGCCTGAGGTACAACTCAAAGGAGACCGCGTTCCACCGAGCCGCCCTGCATCTGCGGGAGGTGGGAGGGGCCGTCCTCCGCCACGCCCACAGACAGGCCCAGAGCATCGGGTTGGACCCCAGCACGGGCATGCACCTCCCAGACTTCCCCAACATGCACGGCTTCTACCAATGCACCTGGGAGGACGtggACTCTCTCCTGGACCCAGACAACAGGCTTCACCTGTCCACAGAGGAGCAGCTGAAGGCCCTGCTGGAGAAGCTGGACATGGTGACGTCCATGCGCTCCAGTGGAGGGAGAACCAAACGCATCCGGCTGTTGCGCAGGGAGATCAACACGATCGGACACAAGCAGCAGCGCTCACAGTCTCTCAACGGGAAAGAAGAAGAAGtcgaggaagagggggaagaagaaAAGGGAGAGAAGGGCAATGTGGAGAACGGCCCTTTAACATCAGCCTCTACCCCGGGGACAGATGACTCTCCACCAACACTAGAGCTTTCATGCCCAGTGTCGTCCCCCCTGCCAGGCGATGCCCCACCTGAACCACCCTTACTGGGCCTAGTGACCACAGGGCGAAGGTCACCAGGGCGCTCCTACAAGCGGCAGAGAGCCTCCCGTAGTGGGGGCAACGGGCGGAGTGATGATGATGCTGAAGTTGGGGAGACACCGACACCGTGCAAACAGGAGGAGGCTTCTCAAGAGGTCTCTCCTTTGGAAACTCCCAGTCCTCCCATGAACGCCTGTCCTTTGGTTGGAGTTGGCCGTCGTACATCTGTTCTGTTCAAGAAAGCTAAAAATGGAGTAAGACTCGCAAAGAACAAGGCGGCTCAGTTACAGAACAGACGGACCACTGAGGCTAAAACCAATGGCTTGGACCGTACCCCCACCATTCCAAAACCTCCCAGTGTGACCGCCCTCTCCAACCctgcccctccccccacaccGCCCACACCCTCCTCACCGTCATCCCACCACCTGAGGTCCAGAGGGTCCAACTCTGACAGCGAGGCAGACAAGCCCCTTCATCTCGTCAAAGAGGATGGCTTGACAAATGGGCTAGGAAAGCACAAAGAGGACTCCTCAGACCCACAATCCAATGACCAAAAACACAGTGCCCCCCTGCTACCCAAACGCAGTCGTGGTAAACCAGCTCTGGCTAAAGTCCCAGAGAGGCAGAATGGAGGCTCAGGGATGAGTATTCTTTTGCCCTTTGAAAGTCAGACAGAGCTCACACCATTGGACTTGGTCTGGGCTAAGTGTCGTGGATATCCATCATACCCAGCAATGGTTGTTGACCCTGACATGCCTCAGGAAGGGCTTCTTCACAACGGCATCCCCATCCCCGTGCCTCCTGGGGACGTGCTCAAACTAGGGGAGCGGCGGCAGAAAGCGACAGGGGAGAGGCACTACCTCGTGCTGTTCTTCGACACCAAAAGGACCTGGCAATGGCTCCCACGGGACAAGTTGCTGCCAATGGGGATGGATGACACAGTGGACAAACTGCGGCTGATGGAGGGCAAGAAGCCCAGCGTCCGCAAGTCTGTACACACGGCATACGACCGTGCCATGATACACCTGAACCACGTTATGAACCACGCCAAGGGGAACCTCAGTTTCAACCCCTCCAATTTCATATGAAGGATTTTTATCAGTGTGCAAATCCACCGTAATCTGTCTGGTTAGGAGGGATCAAACCAATAACAAAGAGCTTGAGTGAGAGAAGAACGACCCTATCTTCGTTAATTCACCAGATGGTGGACATGGAATTTGAGTGGTTTGATATACTTAAGTGAGTGATGGTCTGGTTGACTCTCATCTCTTCTGGTGAACATTATCATTTTGGAATTGGGGGGAAATGTGAGAGGGGTTCCTAAGACATGATAAAATGTGATTATTCATTGTGATTTTAGTTTTGGACTTTTACACAACCACTCTGTTGCAATGAGTCTAGTGATATTATGGTTGTTTTAGGCCAAGTGAATCAAGAAAatacatagtatttgttttctccTCAAAAGGGATTTGCTAGTTTCAAAGCATATTCAGATTGTATTTGTCATTGAAATACCATGCTTCTTAAACATATTTTTACACATTGTGAaggattttctttcttttttttttttttaatattgaAGTGAAAATTGTGTGCTTGTTGCAGCTATTTGATGGAACTTGAGGACTTTTGAATGTCTAGTCAGGACAATGGAGATGATGCTGTTTCTCACCGGTCATGTCAGCGGTCACTGCAACCACTTTCTTTTTTTAACAAGGTCAATATCTTGGCGAAATATTATTTGCAAACCCTCCAATGACTTGAAAAGCACAATCTGTCAGTTAGAAAAGGTTTCTAGAACATATGAGCTGTGAAGCCATAGGTATATCAAAAAAAATGTGATATAACTAATGTGTAGAAGCATATgcacatcatgttgtatatatgtAAATGTCTGTGTTTATAATACACAAAGTAATTTAAGGAATGCAAAAATCTAATTAGATTTTAATTTACATCGTGTGACAATTTGAAAgtgttatttaaaaataaatacggAAAAAGATGAAGCTCTGTAGCTATTTGTATCAGTGACGATACTTATTGAGATATCAGAGAATGTGGTCAGTTGGCACAAAACCCTGTAATTGTGTCAGCATAAAAGTGCACCAGCCTCCTAGACTGAGGTGGCAGAGGACTTCTGGATCTTGTCATTTGAATTGTACCACAAGATCTACAATCTGTCTGAAACGATATTTTATCACAATAAATAAATTGTTTGAAATGGTG

Function

NR:

description
bromodomain and PHD finger-containing protein 3-like

GO: NA

KEGG:

id description
K11350 BRPF3; bromodomain and PHD finger-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609344.2 True 5168 mRNA 0.52 13 43545876 43572323
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110527816 LOC106582802 coding downstream 8839 43526691 ~ 43537037 (-)
wdr82 swd2 coding downstream 31133 43511541 ~ 43514743 (-)
LOC110527813 LOC106582800 coding downstream 39404 43492886 ~ 43506472 (-)
cish cish coding downstream 54577 43487093 ~ 43491299 (-)
zmynd10 zmynd10 coding downstream 79591 43457395 ~ 43466285 (-)
plch2b LOC106582806 coding upstream 9991 43582314 ~ 43596447 (-)
skib LOC106582808 coding upstream 28226 43600549 ~ 43639637 (-)
LOC110527821 LOC106582812 coding upstream 73047 43645370 ~ 43663650 (-)
kaznb LOC106582810 coding upstream 91486 43663809 ~ 43823887 (-)
prdm2b LOC106582809 coding upstream 259368 43831691 ~ 43849517 (-)
G610579 NA non-coding downstream 68303 43477270 ~ 43477573 (-)
G610502 NA non-coding downstream 74636 43470962 ~ 43471240 (-)
G610500 NA non-coding downstream 75962 43469706 ~ 43469914 (-)
G610495 NA non-coding downstream 92470 43453115 ~ 43453406 (-)
G610492 NA non-coding downstream 95389 43450201 ~ 43450487 (-)
G611167 NA non-coding upstream 27564 43599887 ~ 43600118 (-)
G611214 NA non-coding upstream 94384 43666707 ~ 43667658 (-)
G611215 NA non-coding upstream 96090 43668413 ~ 43668921 (-)
G611275 NA non-coding upstream 196035 43768358 ~ 43768591 (-)
G611423 NA non-coding upstream 462173 44034496 ~ 44034844 (-)
LOC110527812 LOC106582796 other downstream 106963 43435578 ~ 43439076 (-)
G610183 NA other downstream 378556 43127811 ~ 43167320 (-)
G610182 NA other downstream 382907 43107127 ~ 43162969 (-)
G610570 LOC106582807 other upstream 6770 43579093 ~ 43579964 (-)
G611674 NA other upstream 912532 44484855 ~ 44485752 (-)
G613411 LOC106582852 other upstream 2302642 45874965 ~ 45875700 (-)
LOC110527888 LOC106582868 other upstream 3696000 47260325 ~ 47284791 (-)
G616880 NA other upstream 4914724 48487047 ~ 48529168 (-)

Expression

brpf3a(LOC106582804) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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brpf3a(LOC106582804) Expression in each Bioproject

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brpf3a(LOC106582804) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network