si:dkey-183j2.10 (LOC106582807)


Basic Information

Item Value
gene id si:dkey-183j2.10
gene name LOC106582807
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43567660 ~ 43582311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983292.1
CAAATTTCAACTACTTGTCAACGTCCGTGGACGTCGGTGCTCAGTGGTTGAAAGggctggttacagtaaatggaaagaggggCTCATGGGGATCAGTCTATAGCTGGAAGCCTCAACACAGCCGACTCACTTTACAGCTAACAATCTTATCAGTTTGTGAAATCACGTTGATACCACGACATCATTAGGATCAGAGGTGAAACCATGAGGGTGCTGTTGGGTGTCATCCTGTGCACCATGGTGCTTCTACTGCCCCTAAGGAGCTGTGCTGCGGCAATGCGACCAGACTTGACAATCACTACAATAAAGCAAGATCCATACACCATGTCCAAAGGCTCTCAGATGGAAGGTTACTGCATGGACCTGCTGTCTGAACTGGCCAAGAAACTGGACTTCAAGTACAACGTGCACCTGGTGAAAGATGGGTCCTATGGCAGGCAGGATGAGACTGGGGCCTGGAACGGGATGATCGGAGAGGTGGTGAGAAAGGAGGCAGACCTGGCGATTGCTCCTCTGACCCTCACTGCTGCCCGGGAGAAGGTTGTGGGGATGACCAAACCCTTCATGCAGACAGGAATCAGCATTCTCCTGAGGAAAGACATCTCAGAAGAGGCTGGCATCTTTGACTTCCTGACCCCCTTCTCAGTAGAGACCTGGGTGGGGATCCTCGCTGCGTACCTGGGGACTGCTGTCTCCATCTGTGTAGTAGCCAGACTCAGCCCATGTGAGTGGAGTCAACCCCAGACTGAGGAAAACAGCTTTACTTTCAGCCACAGTTTGTGGTACACTGCTGGAGCCCTCACTCTACAGGGTGCCGGTCCACACCCCAAAGCTTTATCAGGACGCATAATATGCTGCACCTGGTGGTTGTTTGGTCTGGTCCTCTTGGCTTGCTATTTCTCCAACCTCAGCACATCTCAGGGCTCAGACTCCAATCAGCTGATGGTGAAAGGGTTTGAGGACTTGGCCAACCAGCAAGGGATTGAGTATGGGACCCTGTCTGGCTCCTCCACACTTGCCTTCTTCAAGAACTCTAATAACCCAACCTACCGCAGGATCTACGAGCACATGGAGAGAGCCAAGAGTTTTGTGTCATCAATGGATGAGGGTGTTCGCCGGGCAAAGGAGGGCAACTTTGCCTTCATTGGAGAGTCTGTGTCACTGGACTTGGTGGCGGCTCGTCACTGTGAGCTGGTCCGTGTCCATGAGGTCATCGGCATGAGAGGGTACAGCATCGCAGGCACCCTGGGCTCTCCCATGCTGAAGAACCTCAGTGTGGCCATCCTGGAGCTGAGTGAGGCAGGAGAGCTGGCTTACCTGCGCAGTAAGTGGTGGGCCAGCAGCTGCATGGCAGACGCAGCCAAGGCCTCCCCCTTCCAGCCCCACAGCCTGAAGGGCATGTTCCTGGTGCTTGCTCTGGGCCTGGGGCTAGGGGTGCTGCTGGCTGTCCTGGAGCTCACCACCAAGTCCCGGAGCAATGCCAGGGAGCAGAGGAAATCCTATTGCACAGTGTTGTCTGATGAACTGAGTCAGCGCTTGAGGACCACCGCCACCAACCAGAAGAGGAGCCAGGAAACCACAGACAAAGACAAAGCATGAGTAGAAATGATAGTAGATACTCCATTATATATGGCCTAACAAAGCATTTGTCACTATGCAGGTCTTGACATGAGTTTTGTTCtagatactttttttttttaaccacaaAGAAACACTGTGTATCAGATATGCTTGCAGACTATTTCCAGGCTGTTATATGACATGTGTTAGTTAACAGAGTAATAAATAGCGTACTGGAGAGGTGGAGTAAATTAACAATTCTACAGTATTATTATGTTGAAGATATtttattgagaaaaaaaacatgtatatCTACTGTTACAAATAatttcatgtgtagtgatttagaAAGATTTAAGAGCGGTGCAAAAATAGAAATGAAACCTGAAGGTCCAAGTCAAGTCATCTTGTAAATTAGGAAAAATCATCACTTTCAAAGAGTTTACATTTCAGTACTTTTGGTCAGCACAAATACTGAGAGCAATATATTACTGTTATTAATGAAATTATGCAGTACATTCGTTTTAAAGTAGatcatacatatacatattataGATACCAAGTATACTGAACTGTTTTTGTACAATTGGCAGCACACATTTCGCACATTCGTTTCAAACCTATAAAACCGTCTGTTCACTTACATAACATGTTTTGTCATTATAGAActcaacacatttttttaaaaagcatTATGTCATAGAACGATGTTGATGTAAAAGTTACGGCATATCTTTCAATAAAACCAGTCTAGTAATGAA
>XM_021609349.2
CTCCACCCACAAAAAAGTCCATTGGCTGTTTTAGCAGCTCTGTTGTGCTGGGATGAATTTTTCTCATCATCATTTGCCCTCGTTCATCAGGATCAGTCTATAGCTGGAAGCCTCAACACAGCCGACTCACTTTACAGCTAACAATCTTATCAGTTTGTGAAATCACGTTGATACCACGACATCATTAGGATCAGAGGTGAAACCATGAGGGTGCTGTTGGGTGTCATCCTGTGCACCATGGTGCTTCTACTGCCCCTAAGGAGCTGTGCTGCGGCAATGCGACCAGACTTGACAATCACTACAATAAAGCAAGATCCATACACCATGTCCAAAGGCTCTCAGATGGAAGGTTACTGCATGGACCTGCTGTCTGAACTGGCCAAGAAACTGGACTTCAAGTACAACGTGCACCTGGTGAAAGATGGGTCCTATGGCAGGCAGGATGAGACTGGGGCCTGGAACGGGATGATCGGAGAGGTGGTGAGAAAGGAGGCAGACCTGGCGATTGCTCCTCTGACCCTCACTGCTGCCCGGGAGAAGGTTGTGGGGATGACCAAACCCTTCATGCAGACAGGAATCAGCATTCTCCTGAGGAAAGACATCTCAGAAGAGGCTGGCATCTTTGACTTCCTGACCCCCTTCTCAGTAGAGACCTGGGTGGGGATCCTCGCTGCGTACCTGGGGACTGCTGTCTCCATCTGTGTAGTAGCCAGACTCAGCCCATGTGAGTGGAGTCAACCCCAGACTGAGGAAAACAGCTTTACTTTCAGCCACAGTTTGTGGTACACTGCTGGAGCCCTCACTCTACAGGGTGCCGGTCCACACCCCAAAGCTTTATCAGGACGCATAATATGCTGCACCTGGTGGTTGTTTGGTCTGGTCCTCTTGGCTTGCTATTTCTCCAACCTCAGCACATCTCAGGGCTCAGACTCCAATCAGCTGATGGTGAAAGGGTTTGAGGACTTGGCCAACCAGCAAGGGATTGAGTATGGGACCCTGTCTGGCTCCTCCACACTTGCCTTCTTCAAGAACTCTAATAACCCAACCTACCGCAGGATCTACGAGCACATGGAGAGAGCCAAGAGTTTTGTGTCATCAATGGATGAGGGTGTTCGCCGGGCAAAGGAGGGCAACTTTGCCTTCATTGGAGAGTCTGTGTCACTGGACTTGGTGGCGGCTCGTCACTGTGAGCTGGTCCGTGTCCATGAGGTCATCGGCATGAGAGGGTACAGCATCGCAGGCACCCTGGGCTCTCCCATGCTGAAGAACCTCAGTGTGGCCATCCTGGAGCTGAGTGAGGCAGGAGAGCTGGCTTACCTGCGCAGTAAGTGGTGGGCCAGCAGCTGCATGGCAGACGCAGCCAAGGCCTCCCCCTTCCAGCCCCACAGCCTGAAGGGCATGTTCCTGGTGCTTGCTCTGGGCCTGGGGCTAGGGGTGCTGCTGGCTGTCCTGGAGCTCACCACCAAGTCCCGGAGCAATGCCAGGGAGCAGAGGAAATCCTATTGCACAGTGTTGTCTGATGAACTGAGTCAGCGCTTGAGGACCACCGCCACCAACCAGAAGAGGAGCCAGGAAACCACAGACAAAGACAAAGCATGAGTAGAAATGATAGTAGATACTCCATTATATATGGCCTAACAAAGCATTTGTCACTATGCAGGTCTTGACATGAGTTTTGTTCtagatactttttttttttaaccacaaAGAAACACTGTGTATCAGATATGCTTGCAGACTATTTCCAGGCTGTTATATGACATGTGTTAGTTAACAGAGTAATAAATAGCGTACTGGAGAGGTGGAGTAAATTAACAATTCTACAGTATTATTATGTTGAAGATATtttattgagaaaaaaaacatgtatatCTACTGTTACAAATAatttcatgtgtagtgatttagaAAGATTTAAGAGCGGTGCAAAAATAGAAATGAAACCTGAAGGTCCAAGTCAAGTCATCTTGTAAATTAGGAAAAATCATCACTTTCAAAGAGTTTACATTTCAGTACTTTTGGTCAGCACAAATACTGAGAGCAATATATTACTGTTATTAATGAAATTATGCAGTACATTCGTTTTAAAGTAGatcatacatatacatattataGATACCAAGTATACTGAACTGTTTTTGTACAATTGGCAGCACACATTTCGCACATTCGTTTCAAACCTATAAAACCGTCTGTTCACTTACATAACATGTTTTGTCATTATAGAActcaacacatttttttaaaaagcatTATGTCATAGAACGATGTTGATGTAAAAGTTACGGCATATCTTTCAATAAAACCAGTCTAGTAATGAA

Function

NR:

description
glutamate receptor U1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983292.1 False 2321 mRNA 0.47 11 43567660 43582311
XM_021609349.2 True 2321 mRNA 0.47 10 43576834 43582311

Neighbor

gene id symbol gene type direction distance location
mon1bb LOC106582805 coding upstream 21843 43536997 ~ 43545817 (+)
LOC110528952 NA coding upstream 38613 43526931 ~ 43529047 (+)
LOC110527818 NA coding upstream 40992 43524687 ~ 43526668 (+)
LOC110527808 ab14b coding upstream 532449 43027924 ~ 43035211 (+)
LOC110527804 cssa22h3orf18 coding upstream 576296 42985660 ~ 42991364 (+)
ppcs ppcs coding downstream 382166 43964477 ~ 43966869 (+)
si:dkey-264d12.5 LOC106582817 coding downstream 420245 44002556 ~ 44035143 (+)
LOC110527834 LOC106582821 coding downstream 503554 44085865 ~ 44092535 (+)
LOC110527839 NA coding downstream 581945 44164248 ~ 44178065 (+)
mmel1 LOC106582826 coding downstream 633223 44215534 ~ 44261277 (+)
G610545 NA non-coding upstream 6991 43552330 ~ 43560669 (+)
G610528 LOC106582801 non-coding upstream 52917 43513765 ~ 43514743 (+)
G610517 LOC106582800 non-coding upstream 69935 43495012 ~ 43497725 (+)
G610512 cish non-coding upstream 78676 43486861 ~ 43488984 (+)
G610477 NA non-coding upstream 112057 43455337 ~ 43455603 (+)
G610564 LOC106582806 non-coding downstream 2937 43585248 ~ 43586231 (+)
G610627 NA non-coding downstream 41285 43623596 ~ 43673775 (+)
G610622 NA non-coding downstream 247527 43829004 ~ 43831880 (+)
G610764 NA non-coding downstream 284891 43867202 ~ 43872623 (+)
G610879 NA non-coding downstream 476796 44059107 ~ 44064534 (+)
G610436 NA other upstream 156854 43410391 ~ 43410806 (+)
G609436 NA other upstream 746415 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1736852 41827211 ~ 41830808 (+)
G607904 NA other upstream 2104491 41462824 ~ 41463169 (+)
G606977 NA other upstream 2933221 40634181 ~ 40634439 (+)
G610563 LOC106582806 other downstream 1709 43584020 ~ 43584896 (+)
G613664 NA other downstream 2696423 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 3049811 46629591 ~ 46638492 (+)

Expression


Co-expression Network