LOC110527824 (LOC106582813)


Basic Information

Item Value
gene id LOC110527824
gene name LOC106582813
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43868780 ~ 43960544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609355.2
ATAATGTCTTGCTGATAAATATAACCTCGAGTGGTACTGTAGTACGAGTATTACTAGCTAAgaaacaacattttttaaatcacGTATGTTGTTGTAATTATAATGATTGAGTAAATatgtgttgttattattattgtgaaCGTAGTTctagcagaggcagagagagagaggggacagtgaagtAGAGGACTAGTTTTTGTGGCTGTGTACATCGCCGAGTGCAGTAATGTAGCCAGTGCAGTTTGTAATTTGCGTCGTTCTCTGAATTGTATTGAAAGTAGTTCcgggtattttttttttgttgtagccTGTGTAGAAAACGAGTCCCGGATGTTGGCTGTCGAGACTGGACTCGAGAGAAAGGCGAACGGGAAAAGGCAGAGAAGCCGAATAGGGACGACACTGGCGAGAGTTCAACGGGTCTTACCTAGGACAAACTCCAAGAGCATAGGCACCTGAGGGACTTTCTTGTTGAAGAAGAGGTGAAAGGGGAGGGGGCAGATACTTCAATACTGCCCTGGACCAAGGTAACGACCTGACATACCCAGGGCCTCACTCAGAGACCGCTAGACAGCTGAGCTGGGGGAGCCTTGCCCTCAGCCTCCACTCACCTCACCTGGCCTGCTTTCCACCCATCAacacccccccgccccccccccagcCTAGCCCAGCCTGCCGTCGCTATGACGTCGGAGCTGGAGAGTAGTCTGACCTCCATGGATTGGCTGCCTCAGCTGACCATGCGGGCTGCCATCCAGAAGGCGGATGCCCAGGGGGGCCACGGGGGGCAGGGCATGGGCAAGAAGAACGCCATGCTGGACCCCAACACCACGCTGGACCAGGAGGAGGTCCAGCAACACAAAGATGGCAAGCCGCCCTACAGCTACGCCAGCCTCATCACCTTCGCCATCAACAGCTCGCCAAAGAAGAAGATGACTCTGAGCGAGATCTACCAGTGGATCTGTGACAACTTCCCTTACTACCGGGAGGCAGGCAGCGGCTGGAAGaaCTCAATACGGCACAATCTGTCATTGAACAAGTGTTTTCTCAAAGTGCCTCGCTCCAAAGACGACCCGGGAAAGggcTCCTACTGGGCCATCGACACCAACCCAAAGGAAGACGCCTTGCCCACACGGCCGAAGAAGAGGCCACGGTCCGGAGAGAGGgcTTCCACACCGTACAGCCTGGAGTCGGAGTCTTTGGGAATGGACTGTATGATCTCTGGAAGTGCCTCTCCAACGCTGGCAATCAACACTGTGACGAACAAGGTGGCATTATACAACCCAGATCAGGATGGGAGTGACAGCCCAAGAAGCAGCCTTAACAACAGCCTGTCTGACCAGAGTCTGGCCTCAGTCAATCTAAACAGTGTTGGCAGCGTGCACAGCTACACACCGgtGACTAACCATCAAGAGTCGGTGTCTCAGTCCATGAGCCTCCAGCAGCCGCCCCAGCCCCAGTACAGTATGCCAGAGAGGGACAAGCAACTCCTCTTCTCCGACTTTGAAGATCTCAGTGCCTCCTTCCGCAGCCTTTACAAGTCTGTCTTTGAGCAGTCCTTCAGCCAACAGGGTTTGATGGGCATGCCGACGGAGTCGTCCCAGCAGACCCATACCGCCTGCTCCTATCAGCACTCCCCCAGTGGCACAATCAGCACCCAGAACAGCCTGACAAACAACCACTCCAGCAGTGGTGGCCAGGTGCCCCTGTCCCACCCTCCCCAGCTCCCTGGCCAGAACACCCACCCGGGCCACGGCTCGCCCCACACACAGCACCTCTCCCAGCACGGCCAGCATGGCCCACACAACCAACATGGCCAACACGGCCAACACACCCAGCACCCACAGCACCCTCCACACTCTCAGCATGGGCAGCACCCCTCACATGCCCAGCACCCGCAGCAGCACACGCCGCACCCCTCCCAACACGCACAGCACACCCCGCATCCCTCCCAACATGCCCAGCAGCACGGCCAGCACCCCTCCCAGCAGCACGGCCAGCACCCCTCCCAGCAGCAGCACCAGAGCCTGGCTCACCAGCCCCATCCTGCCCAGCAACAGATGGCCTGCAACACAGGTCTGCCCTCTGACTGGTACCCCAATCTGGACGCACTGAAAGAGAGCTGCCGTATTGCCAGCAGTTATAACTGGGCTGATGTCGACCTCTCACCTTTTCAAGGACTGAAGGAGAGCATGAGACAAGCGGAGCTGAACAACTGGTCTCTGGAGCCCACGCAGATCGCTGACCTCTGCTCGTCTATCAACCAGTTCTTCACCCGCACTGGTGTCATTCAGCCACAGGGGGCAGTGCAGCCGCCGCCCGTACCCGTATGCCATGGCTCCATGCACCCCAACAAGCCCAGCCAGCACATCACCACAGGAAATCTCTACATGGACTCCAGACAGAGCATGTCTATGATGGGGCCCCCAGGGTACCCCCACATGACAGgACCCCATGCGCAGATGAACCAGCAGCACATGATCCCTCCCAGAAACTTCCAGATGCACCGCATGCCAGCAGATGACATCCAGGATGACTTTGACTGGGACTCCATTGTCTAACGTTAGATGTTCTGCCCCTAACGAGGAGCTTCCAGGAGGTGCAGAGGAGATGAGTGTATGAGGAAGAAGCCAGGCTGAGCTGTACGCTCACAGTAAAAGGAGACGGAACTGTTGTTGGTGGGATACAGAACCATAGAACAGGTGTCACTTTcggaggagagagcaagagagagagacttcagagtcctgacatttttacaaacaaaaacaaaacctacaaaaaaaaaaaaagtgttacttTGAAGACAATCATATTTAGTAAAACATGTTTAAAGTGGTGGCTTATGTGCTTGTCTTGACGAGGCAAGTAGCACACGTTCATGTCAAAACACATGCTCCAGCCTTCATCCCTTGGCCAGCCCTCTCCGGCCAGCCTCCTtcgcccccctccccccctcccagcCAGCAGCTATCCAAAGTCCCCCCCAGGTCCGTCCGTAACTGTTGTGTGATTTTGAGCGACCTTTTTCGGCTTGTTATCCTTCTCGTGTTGACTTTAGGCCTCAGCTGCTTCTTGGATGAGTTTCTCTCTTTTTCGTTGTTCTTTTATGGAAAACGCAGGCAGCCTTTTTGAGTAACGTGATGGTGCTTGTTGGTCACCTTGTGGGTGGACGATGGATCCCCAATGGTGGGTTTATTGGTAGTGAGGTTAGGTTTACAGTAGCTAAGGTTACGTTATGACCAGGGTGTTTTGCATTGAACTCTGCTTGATATAAAGATCACAGATGCTTCATCATAGAGTAATCCATCCAGTTGTCCTTTAACCAACCCATCTggtccataaaaaaaaaaaagaaaagctaATTGTGGAAATTCAGCAACATTACCGGCAGTATTTGTGGTTTTGTCTATTCTGTCAACAATGTATCATACCTTTTTAAATCTCCAATACTCCAACAAGACTGAAAAAGATGCATGAGTGGGTGACTGTAAGAAATCCAGACCTCCTTTTCACCTTCTGTCCTTTGTTTGACTTATTGAATAATACTTAAGACTGCAAGTACAGTCTCATTCTCAATCACTACATCCTTTCACTAGTCATACACAATGAATTTGAGTACATGTGTGCGCCCTATTGTCTGTAGGTGTCTCTTCACCTATTACATTCTGTGCACATGCTGCACAAAGAACTGTAGGATATCTCCCTGTTCTCTTCTGATGCAGGAAATGACAGGCTAACTTCATTTTTCAGTCGTGAGGTCTACTACAAGCCATGCAGTAGGAATGTTCTTCATTCAGATGCTATACATCTGAATCAGTATCGATCTCCCCCAATATCTTCTTTGCTGTGACCCAGTCAGACTTGCACTGCAAGGCAGAGAATATGCTGTAATACAATCatgaacaataaaataaaaaacaatgggaatgtggtgtgtgtgtgtgagagtgtgtgattTTAATGTAATTTTAGGGCTATGATTGTTTGCTGCAATCATCTGCATATGCTATCAATGAGCACAAAACAGAtgcacaaaaacagaaaaatgaACGGTTAGAGGCAGAGATGCATTTTTTTAGGCAGGGTTTCTTATTCAGAGAAATGAGCACTTTCTGGTCAACAGCcaagggggggggagagagaggagaaaaaaatgGGTGGGAGACTAGTAGTGCTGGAAACACTCCTGTTCACCTGTCATGTCCCGTAGTGGCTACTGAATCGGACTTGTCCTGAACCCTCAACATGGTTGCTTGCGCAACCTATAAGGGAGCTTGGGCTGAGTCTAGCACAGTCCAGCTTACCTTTTCACTTTGTTTCTTTCACTACGGATTACCGAGATAAACTAAACGTTCActgttgcccccccccctccccctttagaCAAACTTTAGCTTGGGTTGGATTTTGTTTCTCTCCAttgctttttttttgtgtgtgtgtgtgatctaacGACAATCGCGACAAGGTTTGTAGTATCACATTAACACAGCTGAGCCCAGACACCTTTTGTCTGTTGTAACAGTTAGTATACATGTGTAGATACTGTGTGGCTGTCCTTTTTGAAACAGGTTGCAGAAGACATAAGTGGGAAAGCTTGGATGGAACTAGAGCTTTTCACAAAAACCTATACTGCCAGGCGTGTCTGCAAGGTTGTACAGATCTTTTGCCAGCCAGTTCACTCTGTAAATGGTTCATACTACCCATTTTGTTCTGATATTTTAGGCTAATTGTTTTTTGCTTTTCCTCTGTCTTTATCCATCATGTCTTGCTACTTCTACCTTTTCCTGTAGCTGGTTTTGGGTTAGATTCCCAAATGTTCCTTGTATTTTAAACaaccgttgtgtgtgtgtgtggctcgcTCATGTTCTTGCCTGTGGATACCCATTGAGTGTTTAGGCTTTGTTTATTGGCCCAAATCAGTCAGTCATTTAAAGGGATACTGAGGGATTCGGACAATTgtttttctacttacccagagtccgATGAACTCGCGGATccccttttttatgtctctacgTGCAGTATAAAGGAAGTTGGAGGTAGTTCGCAAGCCTCTGTTAGCACATTGACTGGAAGTCTGCAGGTACGCTAGAGTATGGGTAAGTAGAAAAATGGTTTAATTGCCAGAATCTCATAGTATCCCTTTAAAACAGTCAGAATGCTCATTCAGTTAAAATGCCAAGGTTACTTCAGATTCTCAACCATTGAGTCCTTCATTAGTGAAcaatgaatactttatgaagtaGTAGTGATCGTGAATTTACCATTTGACTGCTAGATAAGGTCAGCGTGGGTCCTGTAGACTCTATTGAGACTGACCCAAGGAATGGGTGTTAGAATGTGGATCTAAATGTGATAGGGAAGTCTTGGCAGCCCATGGTTGGCAGGGCATGTTTGGTATGTTGCATTTCATCACTGGTAATGATGAGGGCACTAATGGAAAAACACTAGAGGACCGTCAAAGGGTATGTAGTTGTTAACCCACCCCCCACAGCGCAAAGAGGAGATGGGAAGGGCGGGGAAGAGCTCATAGATGTGATGCGCGTTAACGAGTAAGGGAAAGACTATGACTGGGTCATGTTTATGCATCACCCTCTTTActgagtctgtgtgtctgtccgtgtgaGAGAGTACATTTTGTTTGAAAAGACTAACTCAATTTTTAAAATACCACTGGAGATGTACCTGCCAGAGAGATTACTATGAtatcaaaaaaaataaaaaaataagcctTGTTACATGGGAGAACTGCCAACAAGTACTGCTGATTGAGGCCTATTTTATTCAGTGCTGGTGTGTTGTGCttcttgtaaatacatgtattttcAATCATCCCTATTTCCTCTTGGGGGTGGGGCATCAAGGCAAGGGAGGGACTTACTCATGAGAGGAGGGGAAAAGAATAGAGTATTTTGTTATTGTCCAATCAGAGGGTGACACagtatgtatatatctatattgTATATATGTGATGAAAATGGTTGGCTTTTTGTGTGACACTACCTTTTACCTGTACTATGGTTCTACATTCAGTGTTTCAATGTTGataatgtttgtttttctgttttttgATTTTTGTCTTGTCATTTCTTGtatttgttttcattttgtcCTTTTTTTGGTTATTGCACGGTTTATTACTTTTGCTGTCCAATGAGGTGACACAGCTACTCTTTGTATTGGTTTAGTGCTGTAAAATAACTCCAGTGTTATTAGAATTGTCTATCCCACCCCCATCCCCAATATGCATGAATGGCACTTAAAGAAATAAAATATGTTAACTTCACTGTGGAA

Function

NR:

description
forkhead box protein J3-like

GO: NA

KEGG:

id description
K09403 FOXJ2_3; forkhead box protein J2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609355.2 True 6300 mRNA 0.48 12 43868780 43960544

Neighbor

gene id symbol gene type direction distance location
prdm2b LOC106582809 coding downstream 19263 43831691 ~ 43849517 (-)
kaznb LOC106582810 coding downstream 44893 43663809 ~ 43823887 (-)
LOC110527821 LOC106582812 coding downstream 205130 43645370 ~ 43663650 (-)
skib LOC106582808 coding downstream 229143 43600549 ~ 43639637 (-)
plch2b LOC106582806 coding downstream 272333 43582314 ~ 43596447 (-)
utp3 utp3 coding upstream 8364 43968908 ~ 43976969 (-)
fam83e LOC106582814 coding upstream 19337 43979881 ~ 43985397 (-)
si:dkey-264d12.4 LOC106582816 coding upstream 26744 43987288 ~ 44000565 (-)
LOC110527833 LOC106582820 coding upstream 96002 44056546 ~ 44069339 (-)
znf362a LOC106582819 coding upstream 111065 44071609 ~ 44083797 (-)
G611275 NA non-coding downstream 100189 43768358 ~ 43768591 (-)
G611215 NA non-coding downstream 199859 43668413 ~ 43668921 (-)
G611214 NA non-coding downstream 201122 43666707 ~ 43667658 (-)
G611167 NA non-coding downstream 268662 43599887 ~ 43600118 (-)
G610579 NA non-coding downstream 391207 43477270 ~ 43477573 (-)
G611423 NA non-coding upstream 73952 44034496 ~ 44034844 (-)
LOC110527840 miip non-coding upstream 175641 44136185 ~ 44184204 (-)
G611470 NA non-coding upstream 228301 44188845 ~ 44191529 (-)
G611486 NA non-coding upstream 240004 44200548 ~ 44200845 (-)
G611489 NA non-coding upstream 244917 44205461 ~ 44205666 (-)
G610570 LOC106582807 other downstream 288816 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 331815 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 429867 43435578 ~ 43439076 (-)
G610183 NA other downstream 701460 43127811 ~ 43167320 (-)
G611674 NA other upstream 524311 44484855 ~ 44485752 (-)
G613411 LOC106582852 other upstream 1914421 45874965 ~ 45875700 (-)
LOC110527888 LOC106582868 other upstream 3307779 47260325 ~ 47284791 (-)
G616880 NA other upstream 4526503 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 5223880 49184424 ~ 49186096 (-)

Expression


Co-expression Network