ppcs (ppcs)


Basic Information

Item Value
gene id ppcs
gene name ppcs
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43964477 ~ 43966869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609357.2
GTAGCTAATCGAAGAAGACATCACGCCAGACAGCATCCGGAAGTCGCCCGGTACCTCTCAATCATCAGCTACGTTTTTCCCTCGGTGCCTTTTAAAACCAACCAGGCATGGCAGACCCCAGGACCCTCACTGCAGAAGGGAAGCTGTCTGAAGAGTTTGCTGTTCCCTCCCATGTAGAGGAGGTCAAAGGGCAGATGGCAGCTTTTGCTGTGCAGCACAGGGCTGCAGGGCACAGGGTAGTGCTTATCACCTCAGGAGGCACCAAAGTCCCCCTGGAGTCCCGCACCGTCCGCTTCCTGGATAACTTCAGCAGTGGCCGGCGCGGAGCATCCTCGGCAGAGTACTTCCTTGAGTCAGGATATGCTGTGATCTTCCTGCACAGACACCGTTCCTTATATCCTTTCACACGCCTCTACTCTGGGATTAATCTGCTGGACAGCCTACAGCTGGAGAGTGGAAAGGGGGGTTCGGTCTCTGACCAAGTCGTGGTCAACCAGCAGGCACTTCCCaacattgccaaaatcctgatgCGTTACCAGGCGGTGAAAAAGGCAGGGCTTCTTCTGCCTGTGGAGTTCAGCACCTTGTCCGAGTACCTGCACCTCCTCAAAGCAGCAGCACAGGCACTCAGCCCCATAGGGTCCAACGCCATGTTTTATTTGGCTGCAGCGGTGTCGGATTTCTACATCCCAGCGTCTGACATGCCAGAGCACAAGATCCAGTCTTCCAATGGACCACTTCAGATCAGTATGAAGATGGTCCCCAAGATGTTGTCGCCGCTGGTGAAGGACTGGGCCCCTCAAGCATTTGTGATTTCCTTCAAGCTGGAAACAGACCCATCCATCCTGCTGGACAGAGCTCGGCGGGCTCTGGCCACCTATCGGCACCAGGCTGTGGTAGCCAATGTACTGGACACCAGACGAGGTTATGTAGTGGTGGTGACCCCTGACACTCAGGCCGAGCTGGTACTCACAGATGAGGAAGCAAGCAGAGATGTAGAGATTGAGGACAGGATTGTCAGTAATCTGACTGCAGCTCACAGTCAATTCATAACCCAACAAGGCTGAGACCCCAGTTAACCATGCTAGGGCTTTCCCCAACTAAATAAACATTTTGTTGACCGAAA
>XM_021609356.2
CATCCGGAAGTCGCCCGGTACCTCTCAATCATCAGCTACGTTTTTCCCTCGGTGCCTTTTAAAAGCATGGCAGACCCCAGGACCCTCACTGCAGAAGGGAAGCTGTCTGAAGAGTTTGCTGTTCCCTCCCATGTAGAGGAGGTCAAAGGGCAGATGGCAGCTTTTGCTGTGCAGCACAGGGCTGCAGGGCACAGGGTAGTGCTTATCACCTCAGGAGGCACCAAAGTCCCCCTGGAGTCCCGCACCGTCCGCTTCCTGGATAACTTCAGCAGTGGCCGGCGCGGAGCATCCTCGGCAGAGTACTTCCTTGAGTCAGGATATGCTGTGATCTTCCTGCACAGACACCGTTCCTTATATCCTTTCACACGCCTCTACTCTGGGATTAATCTGCTGGACAGCCTACAGCTGGAGAGTGGAAAGGGGGGTTCGGTCTCTGACCAAGTCGTGGTCAACCAGCAGGCACTTCCCaacattgccaaaatcctgatgCGTTACCAGGCGGTGAAAAAGGCAGGGCTTCTTCTGCCTGTGGAGTTCAGCACCTTGTCCGAGTACCTGCACCTCCTCAAAGCAGCAGCACAGGCACTCAGCCCCATAGGGTCCAACGCCATGTTTTATTTGGCTGCAGCGGTGTCGGATTTCTACATCCCAGCGTCTGACATGCCAGAGCACAAGATCCAGTCTTCCAATGGACCACTTCAGATCAGTATGAAGATGGTCCCCAAGATGTTGTCGCCGCTGGTGAAGGACTGGGCCCCTCAAGCATTTGTGATTTCCTTCAAGCTGGAAACAGACCCATCCATCCTGCTGGACAGAGCTCGGCGGGCTCTGGCCACCTATCGGCACCAGGCTGTGGTAGCCAATGTACTGGACACCAGACGAGGTTATGTAGTGGTGGTGACCCCTGACACTCAGGCCGAGCTGGTACTCACAGATGAGGAAGCAAGCAGAGATGTAGAGATTGAGGACAGGATTGTCAGTAATCTGACTGCAGCTCACAGTCAATTCATAACCCAACAAGGCTGAGACCCCAGTTAACCATGCTAGGGCTTTCCCCAACTAAATAAACATTTTGTTGACCGAAA
>XM_036983299.1
TAGCCGAATGATCTTAGGTGCGTGTTCCATGCCAATGAACTTCCTTGTAATAGCAGCTAGTGTGAACCGCATTTTCTAAGGTATAACGTTAACTGCTGTAAAGTGCAGTAAAGTTGTAGCTAGTAGACAAAGCCAACCAGGCATGGCAGACCCCAGGACCCTCACTGCAGAAGGGAAGCTGTCTGAAGAGTTTGCTGTTCCCTCCCATGTAGAGGAGGTCAAAGGGCAGATGGCAGCTTTTGCTGTGCAGCACAGGGCTGCAGGGCACAGGGTAGTGCTTATCACCTCAGGAGGCACCAAAGTCCCCCTGGAGTCCCGCACCGTCCGCTTCCTGGATAACTTCAGCAGTGGCCGGCGCGGAGCATCCTCGGCAGAGTACTTCCTTGAGTCAGGATATGCTGTGATCTTCCTGCACAGACACCGTTCCTTATATCCTTTCACACGCCTCTACTCTGGGATTAATCTGCTGGACAGCCTACAGCTGGAGAGTGGAAAGGGGGGTTCGGTCTCTGACCAAGTCGTGGTCAACCAGCAGGCACTTCCCaacattgccaaaatcctgatgCGTTACCAGGCGGTGAAAAAGGCAGGGCTTCTTCTGCCTGTGGAGTTCAGCACCTTGTCCGAGTACCTGCACCTCCTCAAAGCAGCAGCACAGGCACTCAGCCCCATAGGGTCCAACGCCATGTTTTATTTGGCTGCAGCGGTGTCGGATTTCTACATCCCAGCGTCTGACATGCCAGAGCACAAGATCCAGTCTTCCAATGGACCACTTCAGATCAGTATGAAGATGGTCCCCAAGATGTTGTCGCCGCTGGTGAAGGACTGGGCCCCTCAAGCATTTGTGATTTCCTTCAAGCTGGAAACAGACCCATCCATCCTGCTGGACAGAGCTCGGCGGGCTCTGGCCACCTATCGGCACCAGGCTGTGGTAGCCAATGTACTGGACACCAGACGAGGTTATGTAGTGGTGGTGACCCCTGACACTCAGGCCGAGCTGGTACTCACAGATGAGGAAGCAAGCAGAGATGTAGAGATTGAGGACAGGATTGTCAGTAATCTGACTGCAGCTCACAGTCAATTCATAACCCAACAAGGCTGAGACCCCAGTTAACCATGCTAGGGCTTTCCCCAACTAAATAAACATTTTGTTGACCGAAA

Function

symbol description
ppcs Predicted to enable phosphopantothenate--cysteine ligase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human PPCS (phosphopantothenoylcysteine synthetase).

NR:

description
phosphopantothenate--cysteine ligase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01922 PPCS, COAB; phosphopantothenate---cysteine ligase (ATP)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609357.2 False 1126 mRNA 0.54 4 43964477 43966869
XM_021609356.2 False 1085 mRNA 0.54 4 43964510 43966869
XM_036983299.1 True 1161 mRNA 0.53 4 43964644 43966869

Neighbor

gene id symbol gene type direction distance location
si:dkey-183j2.10 LOC106582807 coding upstream 382166 43567660 ~ 43582311 (+)
mon1bb LOC106582805 coding upstream 418660 43536997 ~ 43545817 (+)
LOC110528952 NA coding upstream 435430 43526931 ~ 43529047 (+)
LOC110527818 NA coding upstream 437809 43524687 ~ 43526668 (+)
LOC110527808 ab14b coding upstream 929266 43027924 ~ 43035211 (+)
si:dkey-264d12.5 LOC106582817 coding downstream 35687 44002556 ~ 44035143 (+)
LOC110527834 LOC106582821 coding downstream 118996 44085865 ~ 44092535 (+)
LOC110527839 NA coding downstream 197387 44164248 ~ 44178065 (+)
mmel1 LOC106582826 coding downstream 248665 44215534 ~ 44261277 (+)
slc45a1 LOC106582828 coding downstream 310051 44276920 ~ 44290303 (+)
G610764 NA non-coding upstream 91854 43867202 ~ 43872623 (+)
G610622 NA non-coding upstream 132597 43829004 ~ 43831880 (+)
G610627 NA non-coding upstream 290702 43623596 ~ 43673775 (+)
G610564 LOC106582806 non-coding upstream 378246 43585248 ~ 43586231 (+)
G610545 NA non-coding upstream 403808 43552330 ~ 43560669 (+)
G610879 NA non-coding downstream 92238 44059107 ~ 44064534 (+)
G610881 NA non-coding downstream 93499 44060368 ~ 44066058 (+)
G610889 NA non-coding downstream 102773 44069642 ~ 44071873 (+)
G610902 LOC106582819 non-coding downstream 112459 44079328 ~ 44080120 (+)
G610893 NA non-coding downstream 131342 44098211 ~ 44102475 (+)
G610563 LOC106582806 other upstream 379581 43584020 ~ 43584896 (+)
G610436 NA other upstream 553671 43410391 ~ 43410806 (+)
G609436 NA other upstream 1143232 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 2133669 41827211 ~ 41830808 (+)
G613664 NA other downstream 2311865 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 2665253 46629591 ~ 46638492 (+)
G615624 NA other downstream 3872519 47839388 ~ 47839722 (+)
G617133 NA other downstream 4859958 48826827 ~ 48827227 (+)

Expression


Co-expression Network