LOC110527834 (LOC106582821)


Basic Information

Item Value
gene id LOC110527834
gene name LOC106582821
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44085865 ~ 44092535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609378.2
AGTGCCCTCTGAGCACAGACCGGAACCCTGCCCCCCTGGACTGAACATGTCCCACAGGGGGAGGGGCGTGGGGAGGTGAATAGAAAGGAAGAGAGCTGTTTGGCTCACACTGACGTGCTGCTGGAGGCGCGTGTGTGCACAGCCATGGATGGTGTGTTGGAGGGAgcggctgtggtgtgtgtgtgtaaactggcCTGCAGTCTTCTCTTCCTGCCCATGGTCACTGCTTCTCTCAGTGCAGTCAGCTTCTGCTGCAACTGCCTGCTGCTCTTCACAGACCTCGTAGTCACAACTATCCTGGTTGTCCTCTGGTTTGCAGACCCCTGGCTACCTCAGTTTTCCACGTCCTCTGATGTCATTGCCCTGCGCTTCCTGCTCTTCCTCAGCCACACCTACTGGGCGGTGCTGCTGATGACCACTCCTCTTGTTGCCGTGGAGACTGCCATGAAGTTGCAGTGGCCCCAGGTCCATGGTGGCAGAGGTAGAGCAGTGGACGGGGACACAGGCGGACGTAGTAAAACTCCAGGCTCTAAAGCTCCTGCACATCACCATGGGGTGACAGTGGAGGTAGAGGACGGGCAGAGCAGGgacacagacagccagagaggaggaagagaggaccaGGAAAAGTGCCTGCCCCACATCATTTACTTCCTCTGCTGTCTGCTGGTGTGGGTTCTCTGTGGTGTCTGTGGGGGTCAGAGCTGGAGACTTTGGGTGAAGGTCTGCATGGAGAGGACCAGCTCCCTCACTATGTGCCTTCCCAGCCTCCCCAACAATGTCCTGTCTGCTCTGGGTGAGCCCTGCTGGGCCCTGGCCACCGTGACCTTGGCCCTCCTGCTGGTGCTGACGGTGGGCTGGGGCCTGCTCAGACGACACCTGGCCCACACAGAGACGGACACACACTCAACGACACACAAGGAGGAACATGGCACTGACATTCAACTGCCCGCACAAACATTCGCTGCACCATGCATGGCTGTAAACCCTGCCACGTCAGCGGTGCCAGACACACAGTCTGTTGACCCAGAGACAACACGATCCAGATGCTCCCTTCACAGCCCATGTTCCGGGAACAACATACAGCTATCACTGGCTCACCATGGATACTCTGTCCTCTTATCGTTGGAGTGTTTGTCAGCAGACATActagaggaacacagagagacaaaaggaCTAGGAGACATGCCTCTCAGCACTACAGTGGAGGAACACACAGGCTCTACCTACAGGAGCCAGTGTGGGATGGGGCAGTGGGGCTTTCCCTGCCTGGGGGTAAACGTAATGACAGGGTTTGTGTGTCTGCTCATTGTCTGTGTGTTACCTCTAAATCTCAGCGTGAACATCCTACTGATCAGGCACATAGAGACAATGCTGGAGTGGAGTTTGAAGCTCTTATTGTTTGTACCCAAAGAAGCCACAGACAACACAGGGCTCTCCCAGTCAATGTAACACAGGCATAAAGTCAGTGTACTGGACAATAAACCCGGATGGGGGTAGTGTTAGATACTAAAGTGTGGCTTGGGAATGGGATTGTGTTGAGAGGGACTTATTAGGTATTGTCCGGGGGTGGGATCAGATGAATATTACATGTACTGTAGACAGCTGGTCTACCTGTCAATGATAAAAAGTAAACGATTCCCCCTTTGA
>XM_036983308.1
AGTGCCCTCTGAGCACAGACCGGAACCCTGCCCCCCTGGACTGAACATGTCCCACAGGGGGAGGGGCGTGGGGAGGTGAATAGAAAGGAAGAGAGCTGTTTGGCTCACACTGACGTGCTGCTGGAGGCGCGTGTGTGCACAGCCATGGATGGTGTGTTGGAGGGAgcggctgtggtgtgtgtgtgtaaactggcCTGCAGTCTTCTCTTCCTGCCCATGGTCACTGCTTCTCTCAGTGCAGTCAGCTTCTGCTGCAACTGCCTGCTGCTCTTCACAGACCTCGTAGTCACAAACCCCTGGCTACCTCAGTTTTCCACGTCCTCTGATGTCATTGCCCTGCGCTTCCTGCTCTTCCTCAGCCACACCTACTGGGCGGTGCTGCTGATGACCACTCCTCTTGTTGCCGTGGAGACTGCCATGAAGTTGCAGTGGCCCCAGGTCCATGGTGGCAGAGGTAGAGCAGTGGACGGGGACACAGGCGGACGTAGTAAAACTCCAGGCTCTAAAGCTCCTGCACATCACCATGGGGTGACAGTGGAGGTAGAGGACGGGCAGAGCAGGgacacagacagccagagaggaggaagagaggaccaGGAAAAGTGCCTGCCCCACATCATTTACTTCCTCTGCTGTCTGCTGGTGTGGGTTCTCTGTGGTGTCTGTGGGGGTCAGAGCTGGAGACTTTGGGTGAAGGTCTGCATGGAGAGGACCAGCTCCCTCACTATGTGCCTTCCCAGCCTCCCCAACAATGTCCTGTCTGCTCTGGGTGAGCCCTGCTGGGCCCTGGCCACCGTGACCTTGGCCCTCCTGCTGGTGCTGACGGTGGGCTGGGGCCTGCTCAGACGACACCTGGCCCACACAGAGACGGACACACACTCAACGACACACAAGGAGGAACATGGCACTGACATTCAACTGCCCGCACAAACATTCGCTGCACCATGCATGGCTGTAAACCCTGCCACGTCAGCGGTGCCAGACACACAGTCTGTTGACCCAGAGACAACACGATCCAGATGCTCCCTTCACAGCCCATGTTCCGGGAACAACATACAGCTATCACTGGCTCACCATGGATACTCTGTCCTCTTATCGTTGGAGTGTTTGTCAGCAGACATActagaggaacacagagagacaaaaggaCTAGGAGACATGCCTCTCAGCACTACAGTGGAGGAACACACAGGCTCTACCTACAGGAGCCAGTGTGGGATGGGGCAGTGGGGCTTTCCCTGCCTGGGGGTAAACGTAATGACAGGGTTTGTGTGTCTGCTCATTGTCTGTGTGTTACCTCTAAATCTCAGCGTGAACATCCTACTGATCAGGCACATAGAGACAATGCTGGAGTGGAGTTTGAAGCTCTTATTGTTTGTACCCAAAGAAGCCACAGACAACACAGGGCTCTCCCAGTCAATGTAACACAGGCATAAAGTCAGTGTACTGGACAATAAACCCGGATGGGGGTAGTGTTAGATACTAAAGTGTGGCTTGGGAATGGGATTGTGTTGAGAGGGACTTATTAGGTATTGTCCGGGGGTGGGATCAGATGAATATTACATGTACTGTAGACAGCTGGTCTACCTGTCAATGATAAAAAGTAAACGATTCCCCCTTTGA

Function

NR:

description
uncharacterized protein LOC110527834

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609378.2 False 1650 mRNA 0.55 3 44085865 44092535
XM_036983308.1 True 1623 mRNA 0.55 3 44085865 44092535

Neighbor

gene id symbol gene type direction distance location
si:dkey-264d12.5 LOC106582817 coding upstream 50722 44002556 ~ 44035143 (+)
ppcs ppcs coding upstream 118996 43964477 ~ 43966869 (+)
si:dkey-183j2.10 LOC106582807 coding upstream 503554 43567660 ~ 43582311 (+)
mon1bb LOC106582805 coding upstream 540048 43536997 ~ 43545817 (+)
LOC110528952 NA coding upstream 556818 43526931 ~ 43529047 (+)
LOC110527839 NA coding downstream 71721 44164248 ~ 44178065 (+)
mmel1 LOC106582826 coding downstream 122999 44215534 ~ 44261277 (+)
slc45a1 LOC106582828 coding downstream 184385 44276920 ~ 44290303 (+)
LOC110527111 LOC106582832 coding downstream 229104 44321639 ~ 44449234 (+)
LOC110527112 NA coding downstream 358051 44450586 ~ 44464197 (+)
G610902 LOC106582819 non-coding upstream 5745 44079328 ~ 44080120 (+)
G610889 NA non-coding upstream 13992 44069642 ~ 44071873 (+)
G610881 NA non-coding upstream 19807 44060368 ~ 44066058 (+)
G610879 NA non-coding upstream 21331 44059107 ~ 44064534 (+)
G610764 NA non-coding upstream 213242 43867202 ~ 43872623 (+)
G610893 NA non-coding downstream 5676 44098211 ~ 44102475 (+)
G610955 miip non-coding downstream 88926 44181461 ~ 44183205 (+)
G610958 NA non-coding downstream 92940 44185475 ~ 44186204 (+)
G610963 NA non-coding downstream 105984 44198519 ~ 44198790 (+)
G610622 NA other upstream 253985 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 500969 43584020 ~ 43584896 (+)
G610436 NA other upstream 675059 43410391 ~ 43410806 (+)
G609436 NA other upstream 1264620 42820956 ~ 42821245 (+)
G613664 NA other downstream 2186199 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 2539587 46629591 ~ 46638492 (+)
G615624 NA other downstream 3746853 47839388 ~ 47839722 (+)
G617133 NA other downstream 4734292 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 5479785 49571790 ~ 49620194 (+)

Expression


Co-expression Network