tnfrsf1b (LOC106582823)


Basic Information

Item Value
gene id tnfrsf1b
gene name LOC106582823
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44157058 ~ 44164433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609384.2
TCGAGTGTTCTTCTGTCGGCTAACTATACGGTTTCAGTATGGACTTTTTCGCAATATCTTAAAGGGTCAATAATAGTTCAATCAATCATGATACTGAGGACTGTAAGTGGCGTTCTTACAGTAAGGATTTTTCTAGCAATCATGGTGCAGCCTGTTGAGAACATGGTGTACACTCTGCCATACACACCAGACTCGGACGGATCCTGCCGCAACAAAACAGCTGAATACTATAACCCAGATGTAAACCTGTGCTGCAGCAAGTGTACTTCTGGGACACGCCGGAAAGTTGTATGCAGCTCTACCTCAGACACGGCGTGTGAACCATGTCCTAGTGACCAGTACAGCGGGACCTTTAATTACTTCCCAAAATGCTTCAGATGTCCCAAGTGTTCAGCAGACAAAGGCCTGAAGTATGTCCAGAAGTGCTCCAGCACCACCAAGACCCAGTGTGCGTGCCAGACTGGGATGTACTGCATACTGGACCAACACCCGGACTGTAAGGAGTGTTCCAGTTATACATACTGCAAGCCTGGTCATGGGGTCTCTGTAGAAGGGACAGCAGAGTCGGATGTGGAATGTGCATCATGCCCCAATGGAACCTTCTCTGACCAGCACTCCTACACCCAGATCTGTCAGCACCACACAGATTGTGTGTCTCAGGGGAGGGACGTACAGACTTACGGTACAGCCACCACCGATGCGGTGTGTGGACCGAAGGTAAATGGACGACTGGTCTCCATCCTCCAAACCACCACACCTCCAAGCCCACCGACCACAATGCCACCCTCTGTTGAAGAGCATACCACATCAAGTCTACAGAGCATGGATATGTCTACAGTACCAACCACCCTGGGCTCAAAGCTGACATCTAGTCCCTCTGATCCACTGGTCATCGCTCCAATGGAAGAAAAATCACCAGGCGTCGACCTTTGGATAGTTGTAGGTGCTATCGGAGGTGTTATGTTCCTGCTGCTGATCATAGGCACTATCATTTACAAGAAAGCCTTCACGAAGTTCATACGTGTATCTTCTACAGAAGATATAAATGGAAAGGAGGCCATTAAATGTCTGCTGGGGAAAGGAGACTGCAGTAATGTCGGTCAGGCAGAGACCCAGCAGGATGCTGTTAAGACCTGGTCAGGCTCTGGGTGCTCCAACAGCCTGGAGGGCCTGTCAATATGCCCCGTCCAGTCCACCCTTCCACAGCCCAGCATCCTGGCCAgcaccccccagcccagcccccaATCCACCAGCCCTCTGGCATCTGTCCCCCTAGTTAATGTCAACATCACTGTTACCTACCCTGTGAACATAGGAAATGAGTTATGCTCCAGACCTACCAGCACCCAGATAGACTCACCACAAGCCGACCCCGAGACCCCTTTATcaagggaggaggaggtgtatgTGAACATGCCACAGCGAGAGAGTTGCAAAGAGGCACTTACACAAGTACAGGAGTTTGGAAATGATGTATGAGGACTGGAGGCATATGGAGGAGGATCAGGCAATAGATTGTGTTTTAgtgatgtttttttcactgtGACTGTTGTCTCTGTTGTTATATGGTTGCTACTTGAAGTACTGGTGGTGACTTTGTgttggtagagagagacagaatgactgTTCATGTGCCTCAGGTAGGATTTCCCAAACTTTGCACGTTTTGCATAAGTTATACCCAGGGAGGGTacccgagtttgggaaaccctggtatATACCCTGATATAATGTGCTGTCTGTGCTGGAAAGTCTTGAACACCTGATTTAGATTGTCATTAACTGTTTGAAGAATTATTGATAAGTGAATGATGTAGGCAATTACTGTGAATGTTGTTGTAAGTATACTGTAGATGTTACACGGCTCAAGGTATCCCAAAATCTTTTATCATAAGTAGGCAATAACCTTTCCTACACATGCCATACTTTTGGGGGAATTCATTATGGCCTGTGCCATATGAGAATATTTCATTTGTATTCTTATGAGGGAAGAGCATGCCTATACTTTCCAGAGTAAGGGTTCTTTGTCTCTTTTTTTAATCAAACTGAAATGGTAGACTAAATGAAACTGCTTTGTTTCTTTTGTTTTTTGGCCTACACCTGTTGAATCGTGTGCTTTCTCTCTGTAAATAAGCAGCAACTGACTGGTAACAGATCATGAGTAATACATTCTCAACATCAGCTCAATAAGaagttaagaatgatggatgagACATTTTTGTATGAAGGGTATTGTTTTTCTGTAATACTATCACCACCTACTGGtggaacaaatatatatatatata

Function

NR:

description
tumor necrosis factor receptor superfamily member 1B-like

GO: NA

KEGG:

id description
K05141 TNFRSF1B, TNFR2, CD120b; tumor necrosis factor receptor superfamily member 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609384.2 True 2288 mRNA 0.46 9 44157058 44164433

Neighbor

gene id symbol gene type direction distance location
LOC110527835 LOC106582822 coding downstream 11091 44103834 ~ 44145967 (-)
znf362a LOC106582819 coding downstream 73261 44071609 ~ 44083797 (-)
LOC110527833 LOC106582820 coding downstream 87719 44056546 ~ 44069339 (-)
si:dkey-264d12.4 LOC106582816 coding downstream 156493 43987288 ~ 44000565 (-)
fam83e LOC106582814 coding downstream 171661 43979881 ~ 43985397 (-)
LOC110527840 miip coding upstream 13998 44136185 ~ 44184204 (-)
prxl2b fam213b coding upstream 97195 44261628 ~ 44269305 (-)
si:ch211-222l21.1 NA coding upstream 126830 44291263 ~ 44294096 (-)
LOC110527846 LOC106582831 coding upstream 151070 44315503 ~ 44320470 (-)
ghrh LOC106582839 coding upstream 421877 44586310 ~ 44590398 (-)
G611423 NA non-coding downstream 122214 44034496 ~ 44034844 (-)
G611275 NA non-coding downstream 388467 43768358 ~ 43768591 (-)
G611215 NA non-coding downstream 488137 43668413 ~ 43668921 (-)
G611214 NA non-coding downstream 489400 43666707 ~ 43667658 (-)
G611167 NA non-coding downstream 556940 43599887 ~ 43600118 (-)
G611470 NA non-coding upstream 24412 44188845 ~ 44191529 (-)
G611486 NA non-coding upstream 36115 44200548 ~ 44200845 (-)
G611489 NA non-coding upstream 41028 44205461 ~ 44205666 (-)
G611499 NA non-coding upstream 59018 44223451 ~ 44223726 (-)
G611502 NA non-coding upstream 63012 44227445 ~ 44227686 (-)
G610570 LOC106582807 other downstream 577094 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 620093 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 718145 43435578 ~ 43439076 (-)
G610183 NA other downstream 989738 43127811 ~ 43167320 (-)
G611674 NA other upstream 320422 44484855 ~ 44485752 (-)
G613411 LOC106582852 other upstream 1710532 45874965 ~ 45875700 (-)
LOC110527888 LOC106582868 other upstream 3103890 47260325 ~ 47284791 (-)
G616880 NA other upstream 4322614 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 5019991 49184424 ~ 49186096 (-)

Expression


Co-expression Network