LOC110527839


Basic Information

Item Value
gene id LOC110527839
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44164248 ~ 44178065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474166.2
GAAGGACACTTACCATGTTCTCAACAGGCTGCACCATGATTGCTAGAAAAATCCTTACTGTAAGAACGCCACTTACAGTCCTCAGTATCATGATTGATTGAACTATTATTGACCCTTTAAGATATTGCGAAAAAGTCCATACTGAAACCGTATAGTTAGCCGACAGAAGAACACTCGAATTACAACCTGGAACAAAAGTGCGCGTTTCCTTGAACTGCTGACTAGCTGAGGAAACTGAGGGCGTCTTTGCACTGCAGTAACCTTCGATTTCAATTTCCTCAAGAAGTCCAGATGTACTGTACCCAAACTGGGACTTCAGTGACCTCTCCTTACAACGGACAAAGTAAACAACCAGCAGCACGACAACCCCTAGTAGCCCACCTATCAGCAGCAGCCATGGGAGAGTGGAAGGGCTCGGTCCAGTATCTGTTGCTGGGAGATGAGatTATATCAGAGGTGttggtgaacccctcccgcagctgaactggctacatagagggcacagcatgatcagaggtatgttttgagaTGAAAGAGGATGCCAACGTCGCCACCTAACCcactcttaagataaccttcgggcccactgggagcccaaggctggttaggagacaccgctAGAAACTCtattatgtaattgtgatgaactgagagaatattagggtagcactgtgattcattaatcatatgctgtcttcattgctcctctgttcttacctctttccctttctgtcttttacacctctctcgcctccccctctttcttcctgtttttataatgcacaccagATGTGCTTTGAAGTACAGATTGCACTTGTATTTACAATATATtacaattataatatttataatgcatAAGGTATTTATAACCcttggataatgaacttctttcaataaagcgtttcacattct
>TU695510
TCACGTCTGAAGGACACTTACCATGTTCTCAACAGGCTGCACCATGATTGCTAGAAAAATCCTTACTGTAAGAACGCCACTTACAGTCCTCAGTATCATGATTGATTGAACTATTATTGACCCTTTAAGATATTGCGAAAAAGTCCATACTGAAACCGTATAGTTAGCCGACAGAAGAACACTCGAATTACAACCTGGAACAAAAGTGCGCGTTTCCTTGAACTGCTGACTAGCTGAGGAAACTGAGGGCGTCTTTGCACTGCAGTAACCTTCGATTTCAATTTCCTCAAGAAGTCCAGATGTACTGTACCCAAACTGGGACTTCAGTGACCTCTCCTTACAACGGACAAAGTAAACAACCAGCAGCACGACAACCCCTAGTAGCCCACCTATCAGCAGCAGCCATGGGAGAGTGGAAGGGCTCGGTCCAGTATCTGTTGCTGGGAGATGAGatTATATCAGAGGTGttggtgaacccctcccgcagctgaactggctacatagagggcacagcatgatcagaggtatgttttgagaTGAAAGAGGATGCCAACGTCGCCACCTAACCcactcttaagataaccttcgggcccactgggagcccaaggctggttaggagacaccgctAGAAACTCtattatgtaattgtgatgaactgagagaatattagggtagcactgtgattcattaatcatatgctgtcttcattgctcctctgttcttacctctttccctttctgtcttttacacctctctcgcctccccctctttcttcctg

Function

NR:

description
tumor necrosis factor receptor superfamily member 1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474166.2 False 912 mRNA 0.43 4 44164256 44178065
TU695510 True 778 lncRNA 0.46 4 44164248 44177923

Neighbor

gene id symbol gene type direction distance location
LOC110527834 LOC106582821 coding upstream 71721 44085865 ~ 44092535 (+)
si:dkey-264d12.5 LOC106582817 coding upstream 129113 44002556 ~ 44035143 (+)
ppcs ppcs coding upstream 197387 43964477 ~ 43966869 (+)
si:dkey-183j2.10 LOC106582807 coding upstream 581945 43567660 ~ 43582311 (+)
mon1bb LOC106582805 coding upstream 618439 43536997 ~ 43545817 (+)
mmel1 LOC106582826 coding downstream 37469 44215534 ~ 44261277 (+)
slc45a1 LOC106582828 coding downstream 98855 44276920 ~ 44290303 (+)
LOC110527111 LOC106582832 coding downstream 143574 44321639 ~ 44449234 (+)
LOC110527112 NA coding downstream 272521 44450586 ~ 44464197 (+)
LOC110527847 LOC106582833 coding downstream 289529 44467594 ~ 44524862 (+)
G610893 NA non-coding upstream 61781 44098211 ~ 44102475 (+)
G610902 LOC106582819 non-coding upstream 84136 44079328 ~ 44080120 (+)
G610889 NA non-coding upstream 92383 44069642 ~ 44071873 (+)
G610881 NA non-coding upstream 98198 44060368 ~ 44066058 (+)
G610879 NA non-coding upstream 99722 44059107 ~ 44064534 (+)
G610955 miip non-coding downstream 3396 44181461 ~ 44183205 (+)
G610958 NA non-coding downstream 7410 44185475 ~ 44186204 (+)
G610963 NA non-coding downstream 20454 44198519 ~ 44198790 (+)
G610967 NA non-coding downstream 23469 44201534 ~ 44201792 (+)
G610971 NA non-coding downstream 28247 44206312 ~ 44206516 (+)
G610622 NA other upstream 332376 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 579360 43584020 ~ 43584896 (+)
G610436 NA other upstream 753450 43410391 ~ 43410806 (+)
G609436 NA other upstream 1343011 42820956 ~ 42821245 (+)
G613664 NA other downstream 2100669 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 2454057 46629591 ~ 46638492 (+)
G615624 NA other downstream 3661323 47839388 ~ 47839722 (+)
G617133 NA other downstream 4648762 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 5394255 49571790 ~ 49620194 (+)

Expression


Co-expression Network