LOC110527112


Basic Information

Item Value
gene id LOC110527112
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44450586 ~ 44464197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984483.1
ATTCCATACCTCAGCCAACCAAACCCCTCCAAAAAGGACAGAGAAAATGATGGTGAGCACAGCCAACCTGTGGTCACTGGAAGATGTGCTTGGGCAGGGGACCACCGCCAGCATCTATAAGGCCCGCAACAAGATGACAGGGCAGCAGGTCGCAGTGAAGGTGTTTAAACTGATGAGCTACAGTCGTCCGTACAAGGTTCAGATGAGAGAGTTCGAGATGCTCAGGAGACTCAACCACAACAACATCGTCAAGCTCTTCTCCGTGGAGGAGgtgaggatgggaggagaggaaCTGAGGAGTAAACAGAGGGTGTTGGTGATGGAGTATTGTTCAGGAGGCAGTCTGCTCAGTCTGCTGGTGGAGCCAGAGAACGCCTTCGGTCTACCAGAACTAGAGCTCCTCATAGTACTACATTGTGTGGTGCACGGGATGAACCATCTGCGTGAAAACAGGGTGGTGCATCAAGATATTAAGCCTGGGAACATCATTCGTCAGGTGGGAGAGGACGGGAGGTCCATCTATAAGCAAACAGAATTTGGAGCGGCCAGAGAACTAGAGGACGATGAGAAGTTTGTCTCCCTCTACGGGACAGAGGAAtacgtgcaccCAGACATAAATGAGTGTGCAGTGCTGCGGAAACCCCAGCAGAAGGCCTATGGTGTGAGTGCTGACCTGTGGAGTATTTACCACGCTGCCACCGGTACTTTACCCTTCACACCCTACAGAGGACCCCGCAAGAACAAGCCCACCATGTATAAGGTCACCACAGAGAAGCCGGTTGGGGCCATTGCTGGAGCCCAGAGGGTTGACGACGGCCCTATAGAGTGGAGTTACCGCCTGCCACAGAGCAGCCAGCTCTCAGTGGGTCTGAGTGGTCAACTGGTGCCAGTGTTAGCTGGGATACTGGAGGCAGACCAGGAGAAGTGTTGGGCATTTGGCCAGTTATTTTTTGCCACCACAGAGATACTACAGAGAGTCTCAGTCCATCTGTTCTGCCTGCAACAGGCCGCAGCTCACCGCATATACATTCACCACCACAACACGATGCACCggctgaagaaggagagagatagtggTGAGAGAATTTCCATGCAACAACCGCATCATCATTGAGTGTTCTGGAGCTGTTATCTCTGCAACCATGCTGGAGTCTGATCGACCCAGACCCATGGGACTGTGACCATgcaacgacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagctataGTAAGAGGTGGATGTTTCTAACTCAGCTGCTTTGGAAGTCTCCGACCTTTGTTCTCTAATCTTAAAGTAACAATGCAAACTGAAGAATTCCTAGTGAGAAACGAACATAATAAATGTCGACATCGACAGATGCTCATCCTACACATTAGTATGTGTATACCATGAATAAACCCATTCATGTACCGGTGGACGTGTGAAATCATATGATCTGTGTATGTTGTGATTGCCCTACGTCACGAGGGAGGACATCCAGTGAGTAACATCAGCTGCCTTCAGACATGCAGCACGAGGGGATtaaatacaatgcattcggaaagtattcagaccccttgacttgtgccacatttagttatgat

Function

NR:

description
LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit epsilon-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984483.1 True 1614 mRNA 0.50 10 44450586 44464197

Neighbor

gene id symbol gene type direction distance location
LOC110527111 LOC106582832 coding upstream 1352 44321639 ~ 44449234 (+)
slc45a1 LOC106582828 coding upstream 160283 44276920 ~ 44290303 (+)
mmel1 LOC106582826 coding upstream 189309 44215534 ~ 44261277 (+)
LOC110527839 NA coding upstream 272521 44164248 ~ 44178065 (+)
LOC110527834 LOC106582821 coding upstream 358051 44085865 ~ 44092535 (+)
LOC110527847 LOC106582833 coding downstream 3397 44467594 ~ 44524862 (+)
LOC110528955 LOC105009000 coding downstream 63713 44527910 ~ 44535089 (+)
LOC110527848 LOC106582834 coding downstream 71027 44535224 ~ 44540487 (+)
ift52 ift52 coding downstream 82057 44546254 ~ 44551269 (+)
LOC110527850 mybl2 coding downstream 90822 44555019 ~ 44576832 (+)
G611081 NA non-coding upstream 9144 44440876 ~ 44441442 (+)
G611080 NA non-coding upstream 10429 44439829 ~ 44440157 (+)
G611079 NA non-coding upstream 11160 44439220 ~ 44439426 (+)
G611078 NA non-coding upstream 12206 44437078 ~ 44438380 (+)
G611077 NA non-coding upstream 14632 44435746 ~ 44435954 (+)
G611093 NA non-coding downstream 10172 44474369 ~ 44474614 (+)
G611099 NA non-coding downstream 16488 44480685 ~ 44481102 (+)
G611101 NA non-coding downstream 17487 44481684 ~ 44481963 (+)
G611083 NA non-coding downstream 20673 44484870 ~ 44485406 (+)
G611105 NA non-coding downstream 28612 44492809 ~ 44493008 (+)
si:dkey-264d12.5 LOC106582817 other upstream 422358 44002556 ~ 44035143 (+)
G610622 NA other upstream 618706 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 865690 43584020 ~ 43584896 (+)
G610436 NA other upstream 1039780 43410391 ~ 43410806 (+)
G609436 NA other upstream 1629341 42820956 ~ 42821245 (+)
G613664 NA other downstream 1814537 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 2167925 46629591 ~ 46638492 (+)
G615624 NA other downstream 3375191 47839388 ~ 47839722 (+)
G617133 NA other downstream 4362630 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 5108123 49571790 ~ 49620194 (+)

Expression


Co-expression Network