ift52 (ift52)


Basic Information

Item Value
gene id ift52
gene name ift52
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44546254 ~ 44551269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609410.2
CATGGTTACTCTTGTGGATCAGTTTTGTACCCACAATGCACCATTTTCCACTGGAAGATGGTTTCTTGAGGTCTTTAAATAGAAGTTAACATACAATGGAGAAGGAGCAGCGCAGCAGTGTTGTTTTTAACGCATCCAAGAGAGAACTGTTCACTGCCAACAATGGTTACAAGTCCCTGCAGAAGAGACTCAGGGCACAATGGAAGATTCAGAGCATGAAAGAGGAGCTCTCCTTGGAGAAGTTGAATGGTGTGAAGTTGTGGATTACTGCTGGCCCCAGGGAAAAGTTCACTGCAGCTGAGTTGGAGGTCCTGAAGCAGTACCTGGATGGGGGAGGAGATGTCCTTGTGATGCTGGGTGAAGGAGGGGAGATGAAGTATGACACCAATATCAACTTCCTTCTTGAGGAGTTTGGGATAATGGTCAACAATGATGCTGTCGTGAGGAATGTATACTACAAGTATTTCCATCCAAAAGAAGCACTTGTGTCCAATGGTGTTCTGAACAGAGAGATCAGTCGGGCTGCAGGCAAAGTGGTGACAGGGATCATCGAAGATGAAAGTGTCGGCAACAATGCACAGGCCCTCACATTTGTGTACCCGTATGGAGCGACACTGAGCGTGATGAAGCCTGCTGTGGCTGTTCTCTCCACTGGGTCCGTCTGCTTCCCCCTCAACAGGCCTGTCCTCGCCTTCTATCAGGTCAAGGAGGCAGGCAAACTGGCAGTGATGGGGTCCTGTCACATGTTCAGTGACCAGTACCTGGACAAAGAGGAGAACAGTAAAATAATGGATGTCGTTTTCCAGTGGCTCATGGGTGATAACATTATTCTGAACCAGATAGATGCAGAGGACCCCGAGATCACAGATTACACCATGCTGCCAGACACAGGCTGCCTGTCTGAGCGACTGCGAGTATGCTTGCAAGAGGGAGAGGAAAATCCAAGAGACTTTACCTCCCTGTTTGACATGTCTCTACTTAAACTATCAACAAACACGTTGCCCCAAGTCATCAGTTCCTACAAGCAGATGAATGTCAAACACGAGCCTCTCCAGCTGATCACACCTCAGTTTGAGACTCCCCTTCCACAGCTGGAGCCTGCTGTCTTCCCGCCTGCCTTCAGGGATCTGCCTCCCCCCATGCTTGACCTCTTTGACCTGGATGAAACCTTTTCTTCTGAGAAGGTGCGTTTGGCACAGCTCTCCAACAAATGCACAGACGATGATCTAGAGTTCTACGTGAGGAAGTGTGGGGACATCTTGGGGGTGACGGGGAAGTTGGATAAAGATCAGAGAGATGCCAAACACATCCTGGAGCACATCTTCTTCCAGGTCGTGGAGTTCAAGAAGCTCAATCAGGAACATGATCTTGACACAGAGACCAGGTTTTCCCCGTTCTGAGGAATTGCAACCAATGAGGTTGCAATTTGATGTATTTTTCATGGGCTTGTATATACCTACATTCAATCTAGATGTATCCATATCATTTTCCCAGTAACTACAAGAATGTAACTCCCCAGCCTTTAAACAGAATGTATATAGTTGATTAGATTAATGTACTAAATCTGACAAGTGAAATTAATATTGTATACGGCTTTCCATATCTGATTGATTACTTGTGGTAAAGGATGACACATTTAGGCATTTACTGTGTAAAGTGTTCCATCATTTCCTCAATGCGTGGTTGATTTAATcaatcaaaaaaaaaatgtatttactatAATAGAttgtaaaatatacattttcttcAGACTGGCATCTTCTTGTGTCCCTTTGTCTGTAAAAGTGAAATTAGAGAACATGTCAATATACCAGCCATTAAACAACCACTGGAGTCTTAGTTGCCCAGccataaaacaaatatatacactTTTAATTAGGAAATAGCATGCCAAAGTGTGGTCCACTTTCACCAAAATGACTTTTTGCTGGCCAAGACACAGCAGCAGTTACTGAGCCTGAGAACCTTACCTCAATTGTTCAGTATAGCACTGTCACATGACCACTTTGGCTTGTTCAGTCTTACCAACACTGGCTAGCTACTCGTCCATGTTTTTGGGTCAATTATTGAACGGTTGCCCAATTATGCAACTTGTATTTAATCTGCTAGTTGATGAGCAACTTCACCAACAAGGCAACTGCCAACAGCAATGATGGGAGGGggcagtggcgtgtattcatggaccCAAGGGAAGTCAGGCTTCCCCCAAAAAATTCACCAATAAAAAAATGATGTat
>XM_021609409.2
tagccagctaacttcaCTTACAACGATTATTATCCTTTTTTTAAAATAGAAATCCATTAATATTTTAAGATGCATTAGGGATTTAGTTACTTTGTTCAAATATACAAAGAAACAGCAAATTATTGGTCCTTCAACACTTTGCTCGCTAGTGACGATTTgtgtaagttagctagctaacttagctgctAGCTAGCGAACGTTGAGTAGATCATCATATAGCTCAATGCAATAATGTAACAACGTGTTTGTCACAGGTCTTTAAATAGAAGTTAACATACAATGGAGAAGGAGCAGCGCAGCAGTGTTGTTTTTAACGCATCCAAGAGAGAACTGTTCACTGCCAACAATGGTTACAAGTCCCTGCAGAAGAGACTCAGGGCACAATGGAAGATTCAGAGCATGAAAGAGGAGCTCTCCTTGGAGAAGTTGAATGGTGTGAAGTTGTGGATTACTGCTGGCCCCAGGGAAAAGTTCACTGCAGCTGAGTTGGAGGTCCTGAAGCAGTACCTGGATGGGGGAGGAGATGTCCTTGTGATGCTGGGTGAAGGAGGGGAGATGAAGTATGACACCAATATCAACTTCCTTCTTGAGGAGTTTGGGATAATGGTCAACAATGATGCTGTCGTGAGGAATGTATACTACAAGTATTTCCATCCAAAAGAAGCACTTGTGTCCAATGGTGTTCTGAACAGAGAGATCAGTCGGGCTGCAGGCAAAGTGGTGACAGGGATCATCGAAGATGAAAGTGTCGGCAACAATGCACAGGCCCTCACATTTGTGTACCCGTATGGAGCGACACTGAGCGTGATGAAGCCTGCTGTGGCTGTTCTCTCCACTGGGTCCGTCTGCTTCCCCCTCAACAGGCCTGTCCTCGCCTTCTATCAGGTCAAGGAGGCAGGCAAACTGGCAGTGATGGGGTCCTGTCACATGTTCAGTGACCAGTACCTGGACAAAGAGGAGAACAGTAAAATAATGGATGTCGTTTTCCAGTGGCTCATGGGTGATAACATTATTCTGAACCAGATAGATGCAGAGGACCCCGAGATCACAGATTACACCATGCTGCCAGACACAGGCTGCCTGTCTGAGCGACTGCGAGTATGCTTGCAAGAGGGAGAGGAAAATCCAAGAGACTTTACCTCCCTGTTTGACATGTCTCTACTTAAACTATCAACAAACACGTTGCCCCAAGTCATCAGTTCCTACAAGCAGATGAATGTCAAACACGAGCCTCTCCAGCTGATCACACCTCAGTTTGAGACTCCCCTTCCACAGCTGGAGCCTGCTGTCTTCCCGCCTGCCTTCAGGGATCTGCCTCCCCCCATGCTTGACCTCTTTGACCTGGATGAAACCTTTTCTTCTGAGAAGGTGCGTTTGGCACAGCTCTCCAACAAATGCACAGACGATGATCTAGAGTTCTACGTGAGGAAGTGTGGGGACATCTTGGGGGTGACGGGGAAGTTGGATAAAGATCAGAGAGATGCCAAACACATCCTGGAGCACATCTTCTTCCAGGTCGTGGAGTTCAAGAAGCTCAATCAGGAACATGATCTTGACACAGAGACCAGGTTTTCCCCGTTCTGAGGAATTGCAACCAATGAGGTTGCAATTTGATGTATTTTTCATGGGCTTGTATATACCTACATTCAATCTAGATGTATCCATATCATTTTCCCAGTAACTACAAGAATGTAACTCCCCAGCCTTTAAACAGAATGTATATAGTTGATTAGATTAATGTACTAAATCTGACAAGTGAAATTAATATTGTATACGGCTTTCCATATCTGATTGATTACTTGTGGTAAAGGATGACACATTTAGGCATTTACTGTGTAAAGTGTTCCATCATTTCCTCAATGCGTGGTTGATTTAATcaatcaaaaaaaaaatgtatttactatAATAGAttgtaaaatatacattttcttcAGACTGGCATCTTCTTGTGTCCCTTTGTCTGTAAAAGTGAAATTAGAGAACATGTCAATATACCAGCCATTAAACAACCACTGGAGTCTTAGTTGCCCAGccataaaacaaatatatacactTTTAATTAGGAAATAGCATGCCAAAGTGTGGTCCACTTTCACCAAAATGACTTTTTGCTGGCCAAGACACAGCAGCAGTTACTGAGCCTGAGAACCTTACCTCAATTGTTCAGTATAGCACTGTCACATGACCACTTTGGCTTGTTCAGTCTTACCAACACTGGCTAGCTACTCGTCCATGTTTTTGGGTCAATTATTGAACGGTTGCCCAATTATGCAACTTGTATTTAATCTGCTAGTTGATGAGCAACTTCACCAACAAGGCAACTGCCAACAGCAATGATGGGAGGGggcagtggcgtgtattcatggaccCAAGGGAAGTCAGGCTTCCCCCAAAAAATTCACCAATAAAAAAATGATGTat
>XM_036983323.1
gccagctaacttcaCTTACAACGATTATTATCCTTTTTTTAAAATAGAAATCCATTAATATTTTAAGATGCATTAGGGATTTAGTTACTTTGTTCAAATATACAAAGAAACAGCAAATTATTGGTCCTTCAACACTTTGCTCGCTAGTGACGATTTgtGTCTTTAAATAGAAGTTAACATACAATGGAGAAGGAGCAGCGCAGCAGTGTTGTTTTTAACGCATCCAAGAGAGAACTGTTCACTGCCAACAATGGTTACAAGTCCCTGCAGAAGAGACTCAGGGCACAATGGAAGATTCAGAGCATGAAAGAGGAGCTCTCCTTGGAGAAGTTGAATGGTGTGAAGTTGTGGATTACTGCTGGCCCCAGGGAAAAGTTCACTGCAGCTGAGTTGGAGGTCCTGAAGCAGTACCTGGATGGGGGAGGAGATGTCCTTGTGATGCTGGGTGAAGGAGGGGAGATGAAGTATGACACCAATATCAACTTCCTTCTTGAGGAGTTTGGGATAATGGTCAACAATGATGCTGTCGTGAGGAATGTATACTACAAGTATTTCCATCCAAAAGAAGCACTTGTGTCCAATGGTGTTCTGAACAGAGAGATCAGTCGGGCTGCAGGCAAAGTGGTGACAGGGATCATCGAAGATGAAAGTGTCGGCAACAATGCACAGGCCCTCACATTTGTGTACCCGTATGGAGCGACACTGAGCGTGATGAAGCCTGCTGTGGCTGTTCTCTCCACTGGGTCCGTCTGCTTCCCCCTCAACAGGCCTGTCCTCGCCTTCTATCAGGTCAAGGAGGCAGGCAAACTGGCAGTGATGGGGTCCTGTCACATGTTCAGTGACCAGTACCTGGACAAAGAGGAGAACAGTAAAATAATGGATGTCGTTTTCCAGTGGCTCATGGGTGATAACATTATTCTGAACCAGATAGATGCAGAGGACCCCGAGATCACAGATTACACCATGCTGCCAGACACAGGCTGCCTGTCTGAGCGACTGCGAGTATGCTTGCAAGAGGGAGAGGAAAATCCAAGAGACTTTACCTCCCTGTTTGACATGTCTCTACTTAAACTATCAACAAACACGTTGCCCCAAGTCATCAGTTCCTACAAGCAGATGAATGTCAAACACGAGCCTCTCCAGCTGATCACACCTCAGTTTGAGACTCCCCTTCCACAGCTGGAGCCTGCTGTCTTCCCGCCTGCCTTCAGGGATCTGCCTCCCCCCATGCTTGACCTCTTTGACCTGGATGAAACCTTTTCTTCTGAGAAGGTGCGTTTGGCACAGCTCTCCAACAAATGCACAGACGATGATCTAGAGTTCTACGTGAGGAAGTGTGGGGACATCTTGGGGGTGACGGGGAAGTTGGATAAAGATCAGAGAGATGCCAAACACATCCTGGAGCACATCTTCTTCCAGGTCGTGGAGTTCAAGAAGCTCAATCAGGAACATGATCTTGACACAGAGACCAGGTTTTCCCCGTTCTGAGGAATTGCAACCAATGAGGTTGCAATTTGATGTATTTTTCATGGGCTTGTATATACCTACATTCAATCTAGATGTATCCATATCATTTTCCCAGTAACTACAAGAATGTAACTCCCCAGCCTTTAAACAGAATGTATATAGTTGATTAGATTAATGTACTAAATCTGACAAGTGAAATTAATATTGTATACGGCTTTCCATATCTGATTGATTACTTGTGGTAAAGGATGACACATTTAGGCATTTACTGTGTAAAGTGTTCCATCATTTCCTCAATGCGTGGTTGATTTAATcaatcaaaaaaaaaatgtatttactatAATAGAttgtaaaatatacattttcttcAGACTGGCATCTTCTTGTGTCCCTTTGTCTGTAAAAGTGAAATTAGAGAACATGTCAATATACCAGCCATTAAACAACCACTGGAGTCTTAGTTGCCCAGccataaaacaaatatatacactTTTAATTAGGAAATAGCATGCCAAAGTGTGGTCCACTTTCACCAAAATGACTTTTTGCTGGCCAAGACACAGCAGCAGTTACTGAGCCTGAGAACCTTACCTCAATTGTTCAGTATAGCACTGTCACATGACCACTTTGGCTTGTTCAGTCTTACCAACACTGGCTAGCTACTCGTCCATGTTTTTGGGTCAATTATTGAACGGTTGCCCAATTATGCAACTTGTATTTAATCTGCTAGTTGATGAGCAACTTCACCAACAAGGCAACTGCCAACAGCAATGATGGGAGGGggcagtggcgtgtattcatggaccCAAGGGAAGTCAGGCTTCCCCCAAAAAATTCACCAATAAAAAAATGATGTat

Function

symbol description
ift52 Acts upstream of or within cilium assembly and intraciliary transport. Located in axoneme and ciliary basal body. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human IFT52 (intraflagellar transport 52).

NR:

description
intraflagellar transport protein 52 homolog

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0005930 axoneme cellular_component

KEGG:

id description
K19681 IFT52; intraflagellar transport protein 52

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609410.2 False 2237 mRNA 0.45 14 44546254 44551269
XM_021609409.2 False 2421 mRNA 0.43 13 44546333 44551269
XM_036983323.1 True 2325 mRNA 0.44 14 44546335 44551269

Neighbor

gene id symbol gene type direction distance location
LOC110527848 LOC106582834 coding upstream 5767 44535224 ~ 44540487 (+)
LOC110528955 LOC105009000 coding upstream 11165 44527910 ~ 44535089 (+)
LOC110527847 LOC106582833 coding upstream 25803 44467594 ~ 44524862 (+)
LOC110527112 NA coding upstream 82057 44450586 ~ 44464197 (+)
LOC110527111 LOC106582832 coding upstream 97020 44321639 ~ 44449234 (+)
LOC110527850 mybl2 coding downstream 3750 44555019 ~ 44576832 (+)
rpn2 LOC106582837 coding downstream 25878 44577147 ~ 44586594 (+)
cdk5rap1 cdk5rap1 coding downstream 39756 44591025 ~ 44595777 (+)
LOC110527113 NA coding downstream 79371 44630640 ~ 44632120 (+)
LOC110527859 LOC106582773 coding downstream 83243 44634512 ~ 44636127 (+)
G611127 NA non-coding upstream 16238 44529766 ~ 44530016 (+)
G611124 NA non-coding upstream 27242 44518760 ~ 44519012 (+)
G611120 NA non-coding upstream 32274 44513747 ~ 44513980 (+)
G611111 NA non-coding upstream 43282 44502754 ~ 44502972 (+)
G611157 NA non-coding downstream 36327 44587596 ~ 44587959 (+)
G611161 NA non-coding downstream 38898 44590167 ~ 44590395 (+)
G611750 NA non-coding downstream 78481 44629750 ~ 44629961 (+)
LOC110527864 LOC106582844 non-coding downstream 224461 44669786 ~ 44778095 (+)
G611811 NA non-coding downstream 228381 44779650 ~ 44780195 (+)
si:dkey-264d12.5 LOC106582817 other upstream 518026 44002556 ~ 44035143 (+)
G610622 NA other upstream 714374 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 961358 43584020 ~ 43584896 (+)
G610436 NA other upstream 1135448 43410391 ~ 43410806 (+)
G609436 NA other upstream 1725009 42820956 ~ 42821245 (+)
G613664 NA other downstream 1727465 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 2080853 46629591 ~ 46638492 (+)
G615624 NA other downstream 3288119 47839388 ~ 47839722 (+)
G617133 NA other downstream 4275558 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 5021051 49571790 ~ 49620194 (+)

Expression


Co-expression Network