LOC110527113


Basic Information

Item Value
gene id LOC110527113
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44630640 ~ 44632120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608271.2
AGACACGTTCCCAGGGACTAATGTGGCCGACCTCTTTGGCATATggcataataaaaaaaaaacatcccaccTGTCCTGTGAGGAATCAGCTATTATTCCCACTGACCATTGTCCCACCGTCGGAGCACTCTGATTGGCTGCAGAGCGTGAGACAGCGCAGAAGGAGGCACATAAATACGACATGGAGATGCAGAGCTCCCTAATGAAGACTCTCTAAGCATCAGCTGACCCAAGACCAGCCgcaacagagcagaacagaggagcTACCAGAACACAAACTCTAGACCCCCATCAAGACCTACCAagaacaacatctccactttatTGACGAGCTGCAAACTCAAGGCCAAACATCTGAAAATGCCCGCCTACTTGGACATTGCGCTTCAGAACAGCACGAACGTGAAAGATCAGCACATTAGGTGTAAACTCTCTCTGCTGGAAAGGAAGTGCAGCAGCGGTGTGGAGAAACTGAAGATAGTCATTGGAGAACACCTCCAGAACGGGATCCCTACATCTCCCATTTCTCCTATTCTGGAGAAAACCGTGTCCCTTTTCACTCCGAAGAAGGCCTTGCTGTCACCCACGGGCTATTCCAAATATTCCAGGGACATACTGCGTCTCTTCCCCACTCCAGAGGAGGACATTGTACCACTCTGCTTTGAACAATGAGTGGAGAGATGCATGGACGTGGAGGTTCCAGTTCAGAGGTCAAGGACCCTGCTGACATTTACTGTGGCGTTGGCTTAATGTATTCACTTGAGGCGCTGCCATAGACTGCAACTGATTGGCCGACACTGGATCGcaactgacagagagacatagtTAAATGAATAATAAGTCCAAAATAGGTTTTGTCTAAAATTACAGTGATTTTGTgaaggttagtttgtgtatatttCAATTCTGTCGAAATGATTTAGAAATGCATTTGCATGCATTGTTATTAGCAGTCGTACTGCTCTATCCTTTCTATGAGAAAGTCAACCTTGGATGTGTTTGGTGATCTCTGCTACCTGGAAGAAAGCAGAGCGGGTTACTCTGATTGTAAACACTTGTCCTCGGAGATTGAGTTAGCGAGTGCTGGGCACTCTTGTTACAATGTAGAAGTATGGACAATGTGACCATTGGTTCATCCCACTTTCTTAGGGTAGGTGAGTCAATGTCGAATTTGAACCCTGCTAGCCTTTACACTAAGAGGAAATGTTATGATTGTTATTTTAAAACTTACTGTTTATTTTGTTTTCAACTACTAATGAATGGCTTCACACACATATAAATGTGCCTAATACACAAATGTGCCTAAAGTGTTTTTACATGTACCTAAAGTGTTTAATTCAAAGACTAAATAAATATTTTCAGCATATAT

Function

NR:

description
uncharacterized protein LOC110527113

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608271.2 True 1369 mRNA 0.44 2 44630640 44632120

Neighbor

gene id symbol gene type direction distance location
cdk5rap1 cdk5rap1 coding upstream 34863 44591025 ~ 44595777 (+)
rpn2 LOC106582837 coding upstream 44046 44577147 ~ 44586594 (+)
LOC110527850 mybl2 coding upstream 53808 44555019 ~ 44576832 (+)
ift52 ift52 coding upstream 79371 44546254 ~ 44551269 (+)
LOC110527848 LOC106582834 coding upstream 90153 44535224 ~ 44540487 (+)
LOC110527859 LOC106582773 coding downstream 2392 44634512 ~ 44636127 (+)
LOC110527115 LOC106582773 coding downstream 6570 44638690 ~ 44640269 (+)
LOC110527864 LOC106582844 coding downstream 37666 44669786 ~ 44778095 (+)
LOC118965288 NA coding downstream 61671 44693791 ~ 44695302 (+)
LOC118965289 NA coding downstream 238074 44870194 ~ 44878900 (+)
G611750 NA non-coding upstream 679 44629750 ~ 44629961 (+)
G611161 NA non-coding upstream 40245 44590167 ~ 44590395 (+)
G611157 NA non-coding upstream 42681 44587596 ~ 44587959 (+)
G611127 NA non-coding upstream 100624 44529766 ~ 44530016 (+)
LOC110527847 LOC106582833 non-coding upstream 105778 44467594 ~ 44524862 (+)
G611811 NA non-coding downstream 147530 44779650 ~ 44780195 (+)
G611958 NA non-coding downstream 150841 44782961 ~ 44783282 (+)
G611976 NA non-coding downstream 165451 44797571 ~ 44797801 (+)
G611978 NA non-coding downstream 167084 44799204 ~ 44799519 (+)
si:dkey-264d12.5 LOC106582817 other upstream 602412 44002556 ~ 44035143 (+)
G610622 NA other upstream 798760 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 1045744 43584020 ~ 43584896 (+)
G610436 NA other upstream 1219834 43410391 ~ 43410806 (+)
G609436 NA other upstream 1809395 42820956 ~ 42821245 (+)
G613664 NA other downstream 1646614 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 2000002 46629591 ~ 46638492 (+)
G615624 NA other downstream 3207268 47839388 ~ 47839722 (+)
G617133 NA other downstream 4194707 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 4940200 49571790 ~ 49620194 (+)

Expression


Co-expression Network