LOC110527859 (LOC106582773)


Basic Information

Item Value
gene id LOC110527859
gene name LOC106582773
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44634512 ~ 44636127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983327.1
CAATATATAGGAGAGATGAAGCCAATAGAGATCAGATTCTCTCTACACAGACCTCTACAGCACAGAGATCCAGCTATGGTACCTACAATCACTTCAACTATGATCTACTCTAAGGAGCACCTGACTCTGACAAAAAAGATAAGAAAGCCAGTGGTGGAGAAGTTACGCAGAGATCGTATCAACAACAGCATTGAGCAACTCAAGTCTCTCCTGGTTCCAGAGATCCTCAACCAGCAGTCCGACTCTAAGCTGGACAAAGCCGACATCCTGGAGATGACAGTTTGCTTCCTGAGACAACAGAAACAGAACCAGCCAGTGAGCTCCTCTTCCTGCTCAGCACCTGTCAATCAGGGTTACTCCAGGTGTGTCCAAGAGATTGTTCACTTCCTTTCTAAATGTGAGCAGAAGTCACAGTCCCAGAGAAGACTGCTGAGCCACTTCCAGAGCCTGCAGCCATCCTCTGATGAGAACAAGAGGAAGATTGACCGTCCTCAGCTGAGCTCCCCAGCCCAGCACAGCATCAGCAAAGACAAGAGTCCAGTCAACATCGCCCCCTGGAGGCCTTGGTAGAGACCTATAGATTGGAGCTCCACTCAGACAAACACAATGGATGGACCATGTTGGTCTAAGATTAATTTCATGGACATTAATGAGTATAATAAAATATATTCATTGTTTTCTGCTTAAGCAGGAGTTTTTAAAAGTCTTGTTGTGATTGAGACATTTCATTTCAGTTGAACTGAAGTTAAAACATTTTTCCAAGAAAATAATCTGATCGATGAAAACTACATTTTTGTAGTGTTAATTGAAATCATCATAACCTTTATGTTTTGTGAAACATGTAGATTATATTGATCATGTGTTTATATTCATGATGAACAATAACTAATGGTTCTCTATGTGAACTTCTAACCCAAAATGGATGCAATATCATCAATCTGTGTGTGATTGTATTTGATGAATCTGTTGTTATGGTCTGAAAATGTGAGTAATTTTTTACCACTACATTTGTGTAGTGATATAGTCATATTGACATTGTATTGAGCATCTTCTGTGAAGCATGTATCAGTTATATATTTGATATTGATCAACTTGAGCTACAGCATCAATGTTCCTCCGTGAGGATTATTTACCCAAACTGGGTATTATACCTGCTATCATCACTCTGTGATTAacaatatttgatttgtttaaagatCGAACTTCTTTGTGAAATTATCGATCATGTTATTTGAATAATGTGTTTATTGCAAATGTGATTAAAATAATGTCTACTTGACAAATACGATTATTTTAAACAATTATTTTGTCTTTCATAAAGAAAGTAACTTTGTATCCTGTACTCTAATAGAGTATCATATCTTGGAGATTTGTTCAAGTTCTTGTTGTGATGTTTAATCACTGTATTTCTGTTGAAATATTTACCTTAAATTAAGGTATTCAATGATGTGACTCATTGAGTCAGTCTGAATAAATACACAAATCATCAAATGAAATATT

Function

NR:

description
transcription factor HES-5-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983327.1 True 1500 mRNA 0.37 2 44634512 44636127

Neighbor

gene id symbol gene type direction distance location
LOC110527113 NA coding upstream 2392 44630640 ~ 44632120 (+)
cdk5rap1 cdk5rap1 coding upstream 38735 44591025 ~ 44595777 (+)
rpn2 LOC106582837 coding upstream 47918 44577147 ~ 44586594 (+)
LOC110527850 mybl2 coding upstream 57680 44555019 ~ 44576832 (+)
ift52 ift52 coding upstream 83243 44546254 ~ 44551269 (+)
LOC110527115 LOC106582773 coding downstream 2563 44638690 ~ 44640269 (+)
LOC110527864 LOC106582844 coding downstream 33659 44669786 ~ 44778095 (+)
LOC118965288 NA coding downstream 57664 44693791 ~ 44695302 (+)
LOC118965289 NA coding downstream 234067 44870194 ~ 44878900 (+)
LOC118965290 NA coding downstream 719414 45355541 ~ 45387473 (+)
G611750 NA non-coding upstream 4551 44629750 ~ 44629961 (+)
G611161 NA non-coding upstream 44117 44590167 ~ 44590395 (+)
G611157 NA non-coding upstream 46553 44587596 ~ 44587959 (+)
G611127 NA non-coding upstream 104496 44529766 ~ 44530016 (+)
LOC110527847 LOC106582833 non-coding upstream 109650 44467594 ~ 44524862 (+)
G611811 NA non-coding downstream 143523 44779650 ~ 44780195 (+)
G611958 NA non-coding downstream 146834 44782961 ~ 44783282 (+)
G611976 NA non-coding downstream 161444 44797571 ~ 44797801 (+)
G611978 NA non-coding downstream 163077 44799204 ~ 44799519 (+)
si:dkey-264d12.5 LOC106582817 other upstream 606284 44002556 ~ 44035143 (+)
G610622 NA other upstream 802632 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 1049616 43584020 ~ 43584896 (+)
G610436 NA other upstream 1223706 43410391 ~ 43410806 (+)
G609436 NA other upstream 1813267 42820956 ~ 42821245 (+)
G613664 NA other downstream 1642607 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 1995995 46629591 ~ 46638492 (+)
G615624 NA other downstream 3203261 47839388 ~ 47839722 (+)
G617133 NA other downstream 4190700 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 4936193 49571790 ~ 49620194 (+)

Expression


Co-expression Network