XLOC_002492


Basic Information

Item Value
gene id XLOC_002492
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 546202 ~ 548201 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005741
gatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcatctgaacagtcacaacctcacagagctgcacaactgcccatctcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattgctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcaGCATAAACACCTGGACTCACCAAGCACACTTTGGTTCTCCATGTTTTGTACAAATTGTTTTTGCTATTCTTCAGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgttaaagctgtttattataatggcatttccaaaggcatcgtttaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaacaaatataataatgat
>TCONS_00005967
agatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcatctgaacagtcacaacctcacagagctgcacaactgcccatctcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtggtaagtcatagttttatttttatttttttattgcaacacTAAGTAGTCCATTCTGTGGCCAATATGATATAAAAGGCCTAAAATGGGACTAACGTGattattgttttgatttctagataagtacttatggggctacacatgcagctgaagttAGCTACATGGAGTAGGACATTTCTTTCAgtatactcttaaagagattcacccaaaaaggaaaattctgtcattaatgactcatacttcactttttccaaatatgtctgagttgctttcttcagttaaacacaatttatattttaaagaaagatgaaaacctgcaaacattaatttccatggtatttgttttttcctactatgcatgtcaatgttttcagcttttcagctttcttcaaaaacttCCATCATGTTCAACacaaaccacttgagggagagtaaatagtgaactattcctttaacccaatctagttgactttactagaaaattgtatagaaacccagtggcttaaaccccttacattttatacagggtacaacttaacagccatacttgaattaaaatattactgtaagtcCAAGAAGATTGTAACGGTTCTAGGTTAATTTAAAGAgggctgtttagtttcaccttgtgtaaaaacataaagggtttaaggcaacatgtttctatgcagttttctaataaagtcaactagtttGAGTTAAGAGTGTAATGGTTTACAGTAAAAGCAGTGAATCATgcaggcataaaataaatgtttagcctTGTAAAACAATAAGCTTgttataatttagaaatatttttagggTGGAGCACTGTATGCTGTAGTAGTTTTCATATAATTGATGAGTCAAACATGAGGTATGTTTTCAATTGCAAGAAGTGAATTAACAATATGTTCATCAAGATTTAAATCTTGCatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaaaaacttgctggaatttGTGTCAGCATTCCCTTCAATGAAAACTACAGCAGTGGACATCAGTGGTGATAAAAATGTTTGAGAAGGATAATGGTGTTCATAATGAGAAGTGCAGTCACTTTCCTGATCTCTGAGTTTGTAGAACTGACAGATCTGCTTGGAATACATGGAAACATGCTGAAAAATGTTTAACCTATTATACAGTTAATTCAAGAGTGCCAGGTTTAATGacactttacatatataaataaatatcactgaactttctaaatgaaacctaacactcattctttgttcagtaatgatattgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaattgctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcaGCATAAACACCTGGACTCACCAAGCACACTTTGGTTCTCCATGTTTTGTACAAATTGTTTTTGCTATTCTTCAGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttg

Function

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0065007 biological regulation biological_process
GO:0043009 chordate embryonic development biological_process
GO:0035295 tube development biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005741 False 601 lncRNA 0.37 3 546202 548200
TCONS_00005967 True 1768 lncRNA 0.34 2 546336 548201

Neighbor

gene id symbol gene type direction distance location
XLOC_002491 NA coding downstream 124549 415997 ~ 421653 (-)
XLOC_002490 CU929346.1 coding downstream 172627 360237 ~ 373575 (-)
XLOC_002489 NA coding downstream 187495 356555 ~ 358707 (-)
XLOC_002488 NA coding downstream 191545 354093 ~ 354657 (-)
XLOC_002486 vaspa coding downstream 203638 323401 ~ 342564 (-)
XLOC_002493 rfx3 coding upstream 51963 600164 ~ 641609 (-)
XLOC_002494 glis3 coding upstream 96373 644574 ~ 690170 (-)
XLOC_002495 NA coding upstream 108850 657051 ~ 657406 (-)
XLOC_002496 bmpr1bb coding upstream 534760 1082961 ~ 1180314 (-)
XLOC_002497 pdlim5b coding upstream 639452 1187653 ~ 1276046 (-)
XLOC_002487 CABZ01049604.1 non-coding downstream 206175 339912 ~ 340027 (-)
XLOC_002480 NA non-coding downstream 365498 179863 ~ 180704 (-)
XLOC_002499 NA non-coding upstream 875040 1423241 ~ 1433140 (-)
XLOC_002501 CABZ01066320.2 non-coding upstream 993062 1541263 ~ 1544095 (-)
XLOC_002502 CABZ01066320.1 non-coding upstream 995962 1544163 ~ 1552789 (-)
XLOC_002504 NA non-coding upstream 1118141 1666342 ~ 1667630 (-)

Expression


Co-expression Network