shq1 (shq1)


Basic Information

Item Value
gene id shq1
gene name shq1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45768698 ~ 45809619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609454.2
TTAATTTTGAACGTTTTCGAAATTCCTTGACCCGGAAGTCCATTTTTAGTGTTGCTGACGAGCCGCTGATGATGATGCCACGCTAAAGTGCTGTTCACATCACACAAGTTTGCCATGATGATTTCTAATGAGACGAGTTCATAAGCTCTCACAGACCCCTGTAGATCCTCACCTGCAGTGTTCTGTTCATCATGATTACTCCAGCGTTTGAGTTGAGCCAGGACCCAACTTTCCTAATCCTGACCATCCGTGTGCCCTACACGAGAACATCAGAGTTTGATCTCTACATCGATGGAGATGATTTCAAATTCTATGCCAAGCCTTACTTCCTCAGACTGACCTTACCTGGAAAGAtagtggaggatgggagggaaaaGGCCACTTTCGACATTGATAAAGGTCTTTTTACCCTGCACGTCCCCAAGGAGACAGCAGGGGAACACTTTGAAGGACTCCAGATGCTGACTAGTCTCCTGGCTCCCAAAGGCTCCCGCTCAGCCAAGCCTCTGGTGGAAGACATGGAAGCGTGCAGTGGTATTTtggatggtgaggaagaggatgaCGAAGAGGAGTTTGACTGGCAGGTTGAGCAGGAAGTGTACATGGACTCCTCAGAGGAGCAGCTGAAGGAACTGCAGAAGTATGGCTTTGGGAGTCAGAGATCCGGAGTGTTCACTCGACTGCAGGAGGAGCTGAGTGATGTCATCGACATCCAAAACCCAGATAGAACCACGGGGTCAGAGAGGAGAAGGAAACGACTGGACGCTGAGACGTCCATATTCTGCCCTGACCATTACCTTGCTGACCTGTTTGAGGACGAGGAGATCCAGGGTCTACTGAAGTTCCGCCCTTGGTGGTCTGATCTGTGCCCAGACTCCATCCGGCAGGGAGAGGCAGCGGTGTCCTTCACTGATGATGAGAAGGAGCAGCTAAGAAAGTTTACCAACCATTCCTACATCCTGGACAAGAAGTCCCGTTTCCAGGTGTGGCTCAGCCTGGTGGACATCATCCTGGCATACTGCTACGAATTGCGCACTACAGAGGGAGAGCACAACGTTGAATCACCGTGGACCATCAGAAAACTAAGTGGGACTCTCTGCTGGCTTGAGACATACAGCTCGTTGCAGGAGGTCTTGGTGTCCTTTGGGAGGAGGGTGTTGTGTTACCCGCTCTACAGGCACTTTTCTCTGGTCTCTGCAGCCGTGCAGGATGCGGCTCGGGTCTTCCAGTCAGGGAAAGCCTGCGTCCTGAAGTGCTTGTTGGAtattcacacagtcttccgggAGAATGAACCGGCCTACATATTGAACGACCTCTACATCACAGACTACTGCGTCTGGATCCAGAGGGTCAAGTCCAGGAAGGTGACAGCTTTGGCCGATCCCTTACGTAAAGTATCCCTACAGAAAAGAGACCTGGATTTGGAGTTGGAGGTGCTGGAGACGGCAGCGACGCtggtagaggaagaagagaaggtGGAGGACGGGGGGAAAAGCCCCAGTAGAACTCCTCTGTCACACATCAGAGAGGAGTCCGACAGCAACGACAGTAGCAGCGACTCGTCTGAGGAGAGTGAGGACTCTGAAGCTGAAGGGAAGGACTGTGCtgacagaacagagggaggaggagagagagccgAGGCCATCCCCATACATCCCCAGCCTGCTGCCCCTCCCATCCACCAGGAGTCCTGTGCTGTTCTCACATCTTCCGAGAGGAAGCCCAGCACCCTCCCATCTGCTGTGTCCTGCCCCAGACAGCTGATCCAGGAgctgggagagagggtggaggaggggctgTGGATTTCAGCACAGCCTCGAGGCAGCAGGCATTCCAGGAGCAGTgcacagggagaggcagagagagactgttcacAGCCTGCGACTGCCACAGCCACTGCAACAGATACTGCCCGCACAGGGGCTTTCCTAGAGCTGAGTCCTCGCAGAAACCCTCTTCTGATTGTCAAAACAGATACTGGTGATGATCTTGATGAGGATGATATCGATGAGGATGACTATTAGCAGATGTCACAGAAAACATGTTGTTAAGGAACTTTACATGCATGCATGACAGCTGATGTCGCGGATGCTTATTTGCCCACAATCAATAATAACTtctgtattgttatttttgtattgtcTTACTTCTAAAATGGAAATGTTGATTAATTTATAGATACATAGCATGGCTCATTTTAGTGTTAGTGTCACTTGAGGAGTTTCAAAAGCTTCCATACTTTGTGTCTATGTGCAAAGCTTTTCATACCAAGCTAAGCATTTTGTTAATAAAACTGATTATATGAA

Function

symbol description
shq1 Predicted to enable unfolded protein binding activity. Predicted to be involved in box H/ACA snoRNP assembly. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human SHQ1 (SHQ1, H/ACA ribonucleoprotein assembly factor).

NR:

description
protein SHQ1 homolog

GO: NA

KEGG:

id description
K14764 SHQ1; protein SHQ1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609454.2 True 2306 mRNA 0.50 12 45768698 45809619
Loading

Neighbor

gene id symbol gene type direction distance location
pdzrn3b LOC106582849 coding upstream 63199 45581833 ~ 45705499 (+)
cntn3b LOC106582848 coding upstream 279451 45419148 ~ 45489247 (+)
LOC118965290 NA coding upstream 381225 45355541 ~ 45387473 (+)
LOC118965289 NA coding upstream 889798 44870194 ~ 44878900 (+)
LOC110527864 LOC106582844 coding upstream 990603 44669786 ~ 44778095 (+)
LOC110527873 LOC106582852 coding downstream 33544 45843163 ~ 45883401 (+)
prok2 LOC106582788 coding downstream 154776 45964395 ~ 45967169 (+)
LOC110527875 NA coding downstream 182668 45992287 ~ 45997119 (+)
foxp1b LOC106582854 coding downstream 188168 45997787 ~ 46209553 (+)
LOC110527877 LOC106582857 coding downstream 529194 46338813 ~ 46341970 (+)
G613087 NA non-coding upstream 32797 45734357 ~ 45735901 (+)
G612741 NA non-coding upstream 373405 45394950 ~ 45395293 (+)
G612680 NA non-coding upstream 417445 45350953 ~ 45351253 (+)
G613155 NA non-coding downstream 30480 45840099 ~ 45840622 (+)
G613494 NA non-coding downstream 164267 45973886 ~ 45974220 (+)
G613509 NA non-coding downstream 176431 45986050 ~ 45986282 (+)
G613510 NA non-coding downstream 177102 45986721 ~ 45987081 (+)
si:dkey-264d12.5 LOC106582817 other upstream 1740470 44002556 ~ 44035143 (+)
G610622 NA other upstream 1936818 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 2183802 43584020 ~ 43584896 (+)
G610436 NA other upstream 2357892 43410391 ~ 43410806 (+)
G609436 NA other upstream 2947453 42820956 ~ 42821245 (+)
G613664 NA other downstream 469115 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 822503 46629591 ~ 46638492 (+)
G615624 NA other downstream 2029769 47839388 ~ 47839722 (+)
G617133 NA other downstream 3017208 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 3762701 49571790 ~ 49620194 (+)

Expression

shq1(shq1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
End of interactive chart.

shq1(shq1) Expression in each Bioproject

Bar chart with 21 bars.
shq1(shq1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network