LOC110527873 (LOC106582852)


Basic Information

Item Value
gene id LOC110527873
gene name LOC106582852
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45843163 ~ 45883401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609456.2
ACAGTATGACACTCACGAAACCTGTGAATACATTGGGCTGGCACTCTTATTCCTAAATTTCGACTATAAACCGCATCATCTCATTTCGATACAGAATATTTCGGGGAAATATATAGCGAGCTACCTATTTCTCTTATTTCCAACCAGACTTTTAAACAGAGGCATGCGGTGATTGGGCGTCTTGGAGTCACGCGGTGTGCAGTCGCCCTGCCGCTGAATGCGAGCTTAACTGCCAGCTTTAGCAGCGGTTCTATCTGGATCCTCCGCGCAGAACCTACAACAATTACTGATTATTACTGAAGACCTTTTCTTCTTTTGGAAGACAGTTCTTCACCATGGGCGACAAGAAAAGCCCTACCAGGCCAAAAAGACAAGCTAAACCAAGTGCTGACGACGGATATTGGGACTGTAGCGTCTGCACCTTCAAGAACAGTGCAGAGGCTTTTAAATGCAGCATATGCGATGTGAGGAAGGGCACATCCACAAGGAAACCCAGGATCAACTCCCAGCTGGTGGCCCAGCAGGTGGCACAACAGTACGCGATGCCTCCCCCGCccaagaaggagaggaaggagaggcctGAGAGGGAGCATGGCCCGGACGGGGAGCTCTTGGACGGGGAGGGGGAGCACCCCGAGGGAGAGCTTCTGGAGAGAGTGAAGCCAGAAGTAGAAGAAGAACCTCCCCTGGATAAAGACGAGAGCAATAAGGAGAAGCCGGAAAATGACCAAGCAGAAAAGCCAGagcaagaggaggagaaagaaaaaGGGAAAGAGATCAGCCTAGCCAGGCCCATCGCCAAGAAACCCAGCATCAAAGAGATCAGCCTAGCCGGGCCTATAGCCAAGAAACCCAGCATCAAAGAGAGCAGCCTAGCCGGGCCCATCGCCAAGAAACCCAGCATTAAAGAGAGCAGCCCAGCCGGCCCCATTGCCAAGAAACCCAGCATAAAAGAGAGCAGCCCAGCTGGCCCCATTGCCAAGAAACCCAGCATAAAAGAGAGCAGCCCAGCCGGGCCCATCGCCAAGAAACCCAGCATCAAAGAGAGCAGCCCAGCCAGCCCCATCGCCAAGAAACCCAGCATCAAAGAGAGCAGCCCAGCCAGGCCCATCGCCAAGAAACCCAGCATCAAAGAGAGTAGCCCAGCCAGGCCCATTGCCAAGAAACCCAGCATCAAAGAGAGCAGCCCAGCCAGGCCCGTTGCCAAGAAACCCAGCATCAAAAAGATCAGACCCAAGACAGACGTTCATCAGAGCTTACCCAGCATACAGTCTGGGGAGTCAACAACCAAGATCAACAACTCTCACATCTccagGCCCAAACTGAAGAACATTGACCGGAGCACCGCTCAGCAGCTAGCCATAACGGTGGGGAACGTGACAGTCATCATAACGGACTTTAAGGAGAAGACCCGCTCCTCGTCCACATCCTCGTCCACCGTGACGTCCAGCTCGGGCTCCGAGCAGCGGCACCAGAGCTCCGGCTCCGAGAGCATGGACAAGAGCTCGTCTCGCGCCTCCACCCCCAAAGGAGAGCTCTCTGTGGGGCACGACGAGTCCTTCTGAGCCCTCCAGTCCAGGTGCTCCGTGAAGACTCTGTGGATGGGATCCCTTAGGGGGAGATATTTCACCTTCCTTCCTCCTGCCTCCGCCTTCCTTCCATCACCGTCCCAGGATGCTGAGAGAGCTAGCTGATTGGAGCTGTCTGCCTTCTGATTGGAGCAGCCCATGGCATGCGCCTAATGGAGAAACGTCCAATCATGGGTACACGTTGAGCATGGCCCAGGCGGGAGAGTGGGGCTGATGGGAATAGCGTCCCCACTGGTGGCATCCTGACACTTGTATGTATTGTTTGATATTTGTACGTGGATGTGCGGCCGACATTTTGTTTATGTGCAAAGAAATGATCTGCTGTACACAATAACCACCACCATTTTAGCaactctgaaacatgacccttaTTTATTACTTGTTGCACCCTTATACTTTGAGAGACTTTTCTTTTGTTGAGGCTTTGCTGTGTAGTTGTACCCCATCTCTCACTTTGACACTTGTTTTCATGGTTGAACTGGTATGATGGGACAAGACACTTGAGACCACAACACACTGGTGCTACATCGATACACTGTGAAACAGTTTCCAACGTGGGACTGTCATTCACACGCTCCAACAAAAGTGCTAATAACCCAGAaattctctcttgctctctttctctctgcctctttcacacactctctctcactcactctcttacACTCGTGTCTGATTTTAGTTTGAACCTCCATGTGGTCTTTCAGGTTGATGTGTAGAGGTGAATGTGCAGCATATAAAGGTCACCTGCTTTGTTTTGATTTGAAGGGCCTACAATGTCAACTCAACACACACCCAAACCTTTGTCTATCATTTAGTCTGATAGATGCTATATATCTTATACAGTCTGTGTCTCCTGTCCTTAACTCTATAGTGTAGGCTATTGTGAAAAACACTAAAGTTGTTGATGTTTTTGCATTCCGTCGCTTTAATATTGGGTAGCCAGTTGAGGAAAGGTGTGGTACCTTTTTTTATTTCTGTAATGACTGAAGGAAAGGTCAAGTTCAGATCCACCTGTCAAGACCACAGTTTGAACTGTAATATAGTGATGCCATATACCGTTTATGATATCCAACTGATGCTAAGGGACTTCAGGTTTTTAGAAGTCCTAGCGAACGTTTGCTAATGTATTTTTTTTGAATGCTCTGGTTTACAAAGTTGTGATTTTTCCGGTTTATTTAGTGCAAAGGCCTGGACAGTTCATGACAATTTGAGAATTGATTTGAGTGACTTTTTCTGCTAAGATATATTTAAGACTCCAATATGTAGGTTAATTGAAGGCAGAAACATTGCAAGTAGATGATATAGCTAATAGAATAATATTGCATTTTTGTTTTGCATTTTCAAAGCAGTAAACACTTACCTAACTAAATAACCAATTAAATGGTTCTAATTCTCATTCTCCTTAGATGAAAATAGACCATTTCCTCTAACTGTATTAAATTGTATAAAGAATAAATGTGTATATCTTAGTTTTATTTATTGAAGGACCAAAGGAATTTCATAATGACATGATACATAGACAAATGAATAACAATTTGAGATGCAATTATAAAATGTGtgaaatgaaatacattttaaataaagACTAATATAATCCATT
>TU697979
TCAAAGAGAGTAGCCCAGCCAGGCCCATTGCCAAGAAACCCAGCATCAAAGAGAGCAGCCCAGCCAGGCCCGTTGCCAAGAAACCCAGCATCAAAAAGATCAGACCCAAGACAGACGTTCATCAGAGCTTACCCAGCATACAGTCTGGGGAGTCAACAACCAAGATCAACAACTCTCACATCTccagGCCCAAACTGAAGAACATTGACCGGAGCACCGCTCAGCAGCTAGCCATAACGGTGGGGAACGTGACAGTCATCATAACGGACTTTAAGGAGAAGACCCGCTCCTCGTCCACATCCTCGTCCACCGTGACGTCCAGCTCGGGCTCCGAGCAGCGGCACCAGAGCTCCGGCTCCGAGAGCATGGACAAGAGCTCGTCTCGCGCCTCCACCCCCAAAGGAGAGCTCTCTGTGGGGCACGACGAGTCCTTCTGAGCCCTCCAGTCCAGGTGCTCCGTGAAGACTCTGTGGATGGGATCCCTTAGGGGGAGATATTTCACCTTCCTTCCTCCTGCCTCCGCCTTCCTTCCATCACCGTCCCAGGATGCTGAGAGAGCTAGCTGATTGGAGCTGTCTGCCTTCTGATTGGAGCAGCCCATGGCATGCGCCTAATGGAGAAACGTCCAATCATGGGTACACGTTGAGCATGGCCCAGGCGGGAGAGTGGGGCTGATGGGAATAGCGTCCCCACTGGTGGCATCCTGACACTTGTATGTATTGTTTGATATTTGTACGTGGATGTGCGGCCGACATTTTGTTTATGTGCAAAGAAATGATCTGCTGTACACAATAACCACCACCATTTTAGCaactctgaaacatgacccttaTTTATTACTTGTTGCACCCTTATACTTTGAGAGACTTTTCTTTTGTTGAGGCTTTGCTGTGTAGTTGTACCCCATCTCTCACTTTGACACTTGTTTTCATGGTTGAACTGGTATGATGGGACAAGACACTTGAGACCACAACACACTGGTGCTACATCGATACACTGTGAAACAGTTTCCAACGTGGGACTGTCATTCACACGCTCCAACAAAAGTGCTAATAACCCAGAaattctctcttgctctctttctctctgcctctttcacacactctctctcactcactctcttacACTCGTGTCTGATTTTAGTTTGAACCTCCATGTGGTCTTTCAGGTTGATGTGTAGAGGTGAATGTGCAGCATATAAAGGTCACCTGCTTTGTTTTGATTTGAAGGGCCTACAATGTCAACTCAACACACACCCAAACCTTTGTCTATCATTTAGTCTGATAGATGCTATATATCTTATACAGTCTGTGTCTCCTGTCCTTAACTCTATAGTGTAGGCTATTGTGAAAAACACTAAAGTTGTTGATGTTTTTGCATTCCGTCGCTTTAATATTGGGTAGCCAGTTGAGGAAAGGTGTGGTACCTTTTTTTATTTCTGTAATGACTGAAGGAAAGGTCAAGTTCAGATCCACCTGTCAAGACCACAGTTTGAACTGTAATATAGTGATGCCATATACCGTTTATGATATCCAACTGATGCTAAGGGACTTCAGGTTTTTAGAAGTCCTAGCGAACGTTTGCTAATGTATTTTTTTTGAATGCTCTGGTTTACAAAGTTGTGATTTTTCCGGTTTATTTAGTGCAAAGGCCTGGACAGTTCATGACAATTTGAGAATTGATTTGAGTGACTTTTTCTGCTAAGATATATTTAAGACTCCAATATGTAGGTTAATTGAAGGCAGAAACATTGCAAGTAGATGATATAGCTAATAGAATAATATTGCATTTTTGTTTTGCATTTTCAAAGCAGTAAACACTTACCTAACTAAATAACCAATTAAATGGTTCTAATTCTCATTCTCCTTAGATGAAAATAGACCATTTCCTCTAACTGTATTAAATTGTATAAAGAATAAATGTGTATATCTTAGTTTTATTTATTGAAGGACCAAAGGAATTTCATAATGACATGATACATAGACAAATGAATAACAATTTGAGATGCAATTATAAAATGTGtgaaatgaaatacattttaaataaagA

Function

NR:

description
PREDICTED: RING1 and YY1-binding protein B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609456.2 False 3192 mRNA 0.47 5 45843163 45883401
TU697979 True 2049 lncRNA 0.43 3 45875605 45883386

Neighbor

gene id symbol gene type direction distance location
shq1 shq1 coding upstream 33544 45768698 ~ 45809619 (+)
pdzrn3b LOC106582849 coding upstream 137664 45581833 ~ 45705499 (+)
cntn3b LOC106582848 coding upstream 353916 45419148 ~ 45489247 (+)
LOC118965290 NA coding upstream 455690 45355541 ~ 45387473 (+)
LOC118965289 NA coding upstream 964263 44870194 ~ 44878900 (+)
prok2 LOC106582788 coding downstream 80994 45964395 ~ 45967169 (+)
LOC110527875 NA coding downstream 108886 45992287 ~ 45997119 (+)
foxp1b LOC106582854 coding downstream 114386 45997787 ~ 46209553 (+)
LOC110527877 LOC106582857 coding downstream 455412 46338813 ~ 46341970 (+)
LOC110527879 LOC106582859 coding downstream 505557 46388958 ~ 46451934 (+)
G613155 NA non-coding upstream 2541 45840099 ~ 45840622 (+)
G613108 NA non-coding upstream 39141 45763460 ~ 45804022 (+)
G613087 NA non-coding upstream 107262 45734357 ~ 45735901 (+)
G613494 NA non-coding downstream 90485 45973886 ~ 45974220 (+)
G613509 NA non-coding downstream 102649 45986050 ~ 45986282 (+)
G613510 NA non-coding downstream 103320 45986721 ~ 45987081 (+)
G613591 NA non-coding downstream 246374 46129775 ~ 46134266 (+)
si:dkey-264d12.5 LOC106582817 other upstream 1814935 44002556 ~ 44035143 (+)
G610622 NA other upstream 2011283 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 2258267 43584020 ~ 43584896 (+)
G610436 NA other upstream 2432357 43410391 ~ 43410806 (+)
G609436 NA other upstream 3021918 42820956 ~ 42821245 (+)
G613664 NA other downstream 395333 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 748721 46629591 ~ 46638492 (+)
G615624 NA other downstream 1955987 47839388 ~ 47839722 (+)
G617133 NA other downstream 2943426 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 3688919 49571790 ~ 49620194 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G261908 rybp,rybpb,LOC106518261 non-coding NW_019171731.1 APWO02001329.1 1174278 ~ 1182540 (-)