prok2 (LOC106582788)


Basic Information

Item Value
gene id prok2
gene name LOC106582788
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45964395 ~ 45967169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608273.2
TGGAGGCCACCTCTCTTTCCAAGTCcatctaacacacacatacacacgtaggAACGCACAGCAGACCATCTCTTTCACCCTGGAGAACACAGGAGCTGGAGAACTTTTCTGCTTCACAATGCGGTCCAGCTGCTCCCTGCTATTCTGCCTACTGCTTGTGTCCCATGGGTCCTCAGCAGTCATCACAGGGGCCTGTGTGAAGGACTTGCAGTGTGGAGAGGGGATGTGCTGTGCGGTCAGTCTGTGGATCAGGAGCCTGAGGATGTGTGCCCCTATAGGACAGAAGGGAGACGAGTGCCACCCCATGAGTCACAAGGTTCCCTTCATTGGCACAAGACTACATCACACATGTCCATGTGTGCCACATTTGGCATGCATCACCACATCAGAGGGCAAATCAAAATGTCTTTCACCGTACAACTACTCAGACTACTACCTCTGAGGACAACCACGGGAAGTGCTGATAGTCATTTTCTAGGTCTGCCTTAGTTTTTAAAATACTGTTTCCATTACGTGTATTAAAGATAACATATAGACATTTTCAGGTTGACTTAAATTTGAAAAGAACAATTTGCTCTCCCTTCTTAATAGCTgcaatccttaattgaaacattaACAAAGTTGACACCCCGTCACAGTTTCAGTAAAAAGTCGAGGAATGGGGCTGGAGAATTGCAACCACTCTCGAATCCATAGACTacactatggatgcaaggactgacaatCCGTGATATCAAAATTGTAGTTTTACATTTAccttgtttacaaacattggagtaaaacaaacttatatTTGGGGTTTTGATGGGTACTACAGTTgagctaagctcatgaggcatttatacgtatattcttcaagaatcaatgggtacatatcattcatttataagtccaaaatggatgtagcaactaaggattcccCTTTTAAGATTCTGGACTTCACACTGTAAGTGCTGATGGCATCTAGTGCCATTCCAAATCAAACAAGAACAACGACTGGATCTGTACATAGGTCCACGAAATATACAGTTTCACTTGCACAGCTTTGCGACTTTACAAACGTGAACGTTAATCATCTGCAGAATTATGTTTAAACCGATATGGAATAAAAATCCTTTCGGGTTTGTTcgtgaaagacagacagaactCATTTCAGAAAGAGCTACGCTGTTTACTATTGTGAATGGCCACTAACAGTGTGTGACGTCCAAAGGACATTTTGACGCTaccgtgttgttgtattgtactgtatgcgACTGGACCTTATGTgcattatgttgttgttgttgttattggtggtggtggtgggaccTGCCATTCAATCACTGGACTTGTTTTTGGGAATAaatg

Function

NR:

description
toxin MIT1-like

GO: NA

KEGG:

id description
K24191 PROK; prokineticin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608273.2 True 1350 mRNA 0.43 3 45964395 45967169

Neighbor

gene id symbol gene type direction distance location
LOC110527873 LOC106582852 coding upstream 80994 45843163 ~ 45883401 (+)
shq1 shq1 coding upstream 154776 45768698 ~ 45809619 (+)
pdzrn3b LOC106582849 coding upstream 258896 45581833 ~ 45705499 (+)
cntn3b LOC106582848 coding upstream 475148 45419148 ~ 45489247 (+)
LOC118965290 NA coding upstream 576922 45355541 ~ 45387473 (+)
LOC110527875 NA coding downstream 25118 45992287 ~ 45997119 (+)
foxp1b LOC106582854 coding downstream 30618 45997787 ~ 46209553 (+)
LOC110527877 LOC106582857 coding downstream 371644 46338813 ~ 46341970 (+)
LOC110527879 LOC106582859 coding downstream 421789 46388958 ~ 46451934 (+)
LOC110527880 NA coding downstream 494541 46461710 ~ 46468087 (+)
G613155 NA non-coding upstream 123773 45840099 ~ 45840622 (+)
G613108 NA non-coding upstream 160373 45763460 ~ 45804022 (+)
G613087 NA non-coding upstream 228494 45734357 ~ 45735901 (+)
G613494 NA non-coding downstream 6717 45973886 ~ 45974220 (+)
G613509 NA non-coding downstream 18881 45986050 ~ 45986282 (+)
G613510 NA non-coding downstream 19552 45986721 ~ 45987081 (+)
G613591 NA non-coding downstream 162606 46129775 ~ 46134266 (+)
si:dkey-264d12.5 LOC106582817 other upstream 1936167 44002556 ~ 44035143 (+)
G610622 NA other upstream 2132515 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 2379499 43584020 ~ 43584896 (+)
G610436 NA other upstream 2553589 43410391 ~ 43410806 (+)
G609436 NA other upstream 3143150 42820956 ~ 42821245 (+)
G613664 NA other downstream 311565 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 664953 46629591 ~ 46638492 (+)
G615624 NA other downstream 1872219 47839388 ~ 47839722 (+)
G617133 NA other downstream 2859658 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 3605151 49571790 ~ 49620194 (+)

Expression


Co-expression Network