LOC110527875


Basic Information

Item Value
gene id LOC110527875
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45992287 ~ 45997119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474170.2
CCGCTGGTGTCGACCCTTTCTGCTAAAGATAATCCATAATCTCCCAGCAAAATTGCATTGTTGCATTTGGTTTCTGTGTAACTGGCAACGAATGTGACTTCAGTTCTGTTCAAATTCTGTGAAGATCTGCAATGAATATTGTTCATCCAGCAGGTGGATATGACGTCACGGACTCGGAACATCAGAAAATAACAACATCCAAATCCGAGATTCCGTTTTCTTTTATAGCGCATTAAATTGTATTAACAGTAGAAGGAGCTCGCTCTCGTATTTGAGACAGAAGGTGTTGTGAAACTCTAGATTATTCTCCCTGTAACGGCGCTCCGTGAATGCAGCAGAGACATCTTCTTGTAGTGGTTAAAGTTAGTCCCCCGAAGCGGAGTAATATTGTTAGTATTTACAGTGTGGTTGTTGCATGCTTTCTTGGTACACAAGATCGCGTGTACAGTTCATTAACTCTATCACAGAATTGTCTACTGAGTCCACCTACCATTGTCGATTCCGATCGGCTGCACGTTTTATTGAATTGACAACATTTTCTATCTAATTTAACACCTTGACTGAGTGGTTTGGACTTCACCTGGACTAAACACAAATCCCACACGTGCATGTTTCTGTGGCTGtgtgagagcagagcagaggaccATTAAACACAACACAGTGGTCTGGTCAAGCTAAGGGCCATACCGTGATTGATGTCTCTCTCCCACGCCTTGGGGCTGCTTGTTTCTCCTCAACTTCTTTACGAGGAGAATATGGAACAGTGGCCCCCACCATCCACCATCACTGGATATCTTCAACCGTGCTAACAATGAGCCTCTAATATGTCATCAGTACTCTTTACTCTATGGCTTTGTGTTTTTCAGGATTATTCAACTATCATTTGATTTTAGGCTTAATGTAGGCCTTTTCATTTTCAGCTGCAGAGAGCTGTACAGGTTGAAGGCATGTCTAAATGTTTCATAATTTATATATAATGGCGTAATTGTGTGACTGTTACAATTTACACATTTGATTATTAAAGTAATTATCACTTTCA
>TU698371
CCAAATCCGAGATTCCGTTTTCTTTTATAGCGCATTAAATTGTATTAACAGTAGAAGGAGCTCGCTCTCGTATTTGAGACAGAAGGTGTTGTGAAACTCTAGATTATTCTCCCTGTAACGGCGCTCCGTGAATGCAGCAGAGACATCTTCTTGTAGTGGTTAAAGTTAGTCCCCCGAAGCGGAGTAATATTGTTAGTATTTACAGTGTGGTTGTTGCATGCTTTCTTGGTACACAAGATCGCGTGTACAGTTCATTAACTCTATCACAGAATTGTCTACTGAGTCCACCTACCATTGTCGATTCCGATCGGCTGCACGTTTTATTGAATTGACAACATTTTCTATCTAATTTAACACCTTGACTGAGTGGTTTGGACTTCACCTGGACTAAACACAAATCCCACACGTGCATGTTTCTGTGGCTGtgtgagagcagagcagaggaccATTAAACACAACACAGTGGTCTGGTCAAGCTAAGGGCCATACCGTGATTGATGTCTCTCTCCCACGCCTTGGGGCTGCTTGTTTCTCCTCAACTTCTTTACGAGGAGAATATGGAACAGTGGCCCCCACCATCCACCATCACTGGATATCTTCAACCGTGCTAACAATGAGCCTCTAATATGTCATCAGTACTCTTTACTCTATGGCTTTGTGTTTTTCAGGATTATTCAACTATCATTTGATTTTAGGCTTAATGTAGGCCTTTTCATTTTCAGCTGCAGAGAGCTGTACAGGTTGAAGGCATGTCTAAATGTTTCATAATTTATATATAATGGCGTAATTGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474170.2 False 1039 mRNA 0.41 2 45992287 45997119
TU698371 True 794 lncRNA 0.42 2 45992485 45997072

Neighbor

gene id symbol gene type direction distance location
prok2 LOC106582788 coding upstream 25118 45964395 ~ 45967169 (+)
LOC110527873 LOC106582852 coding upstream 108886 45843163 ~ 45883401 (+)
shq1 shq1 coding upstream 182668 45768698 ~ 45809619 (+)
pdzrn3b LOC106582849 coding upstream 286788 45581833 ~ 45705499 (+)
cntn3b LOC106582848 coding upstream 503040 45419148 ~ 45489247 (+)
foxp1b LOC106582854 coding downstream 668 45997787 ~ 46209553 (+)
LOC110527877 LOC106582857 coding downstream 341694 46338813 ~ 46341970 (+)
LOC110527879 LOC106582859 coding downstream 391839 46388958 ~ 46451934 (+)
LOC110527880 NA coding downstream 464591 46461710 ~ 46468087 (+)
LOC110527881 LOC106582781 coding downstream 481225 46478344 ~ 46479954 (+)
G613510 NA non-coding upstream 5206 45986721 ~ 45987081 (+)
G613509 NA non-coding upstream 6005 45986050 ~ 45986282 (+)
G613494 NA non-coding upstream 18067 45973886 ~ 45974220 (+)
G613155 NA non-coding upstream 151665 45840099 ~ 45840622 (+)
G613591 NA non-coding downstream 132656 46129775 ~ 46134266 (+)
G613612 NA non-coding downstream 214694 46211813 ~ 46212217 (+)
G613647 NA non-coding downstream 256968 46254087 ~ 46254298 (+)
G613663 NA non-coding downstream 281095 46278214 ~ 46278421 (+)
G613666 NA non-coding downstream 285378 46282497 ~ 46286328 (+)
si:dkey-264d12.5 LOC106582817 other upstream 1964059 44002556 ~ 44035143 (+)
G610622 NA other upstream 2160407 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 2407391 43584020 ~ 43584896 (+)
G610436 NA other upstream 2581481 43410391 ~ 43410806 (+)
G609436 NA other upstream 3171042 42820956 ~ 42821245 (+)
G613664 NA other downstream 281615 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 635003 46629591 ~ 46638492 (+)
G615624 NA other downstream 1842269 47839388 ~ 47839722 (+)
G617133 NA other downstream 2829708 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 3575201 49571790 ~ 49620194 (+)

Expression


Co-expression Network