LOC110527880


Basic Information

Item Value
gene id LOC110527880
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46461710 ~ 46468087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110527880
CTTCCTGCTGTTGAATAAGCATGATGTGGGGGAGAATCCTGAATCCTGTGGTGATTAGCAGAGTTCGTCTCACTTCGAGTTTCAGAAGTCTCCTTACCATGCAGCTGAAGACTACAGAGGTACAGTCCTTATTCAGTGATGGACTGAATGGAATAGCAGAGCTCTTTGAGAAGTACAAGTTTGAGCTGAGGATAGCAGGGGGTGCAGTGCGGGACATTGTCTGGGAAACGGCCAGAGGATGTGGACTTGTGACCATGGCAACACCAGAGGATATGAAGAGCATGTTCCAGACTGCAGGGATCAGGAGGATCAACAATAAATGGGAGAAGCATGGGACCATCACTGCCCGACTTCACAATGAGAACTTTGAGGTGACCACACTGCAGGTGGATGTTCACTTAGACTGGCAGAAAGACGTAGAGACCTCGCCATAGAGACCTCTCCATGTTTTtagGTTTACCTGCAGAGGGCGACGTGGAGGAGATGTAGCGGGTCTGGCAGCACGTGAAGGACCATTCTCCCAAGCCCATGACTTCCTGGTCAAACACAGACGAGACCTCCATAAATCGCAGGAAGATCCAGACAGCATGAAGCCCTACACTGACTATATCATAGATGTAAGCACAGCCATTGCATAACAAAATGAGTTGATGTAATGATACTAACTATATTTAGAATTTTATGACTGTCAAGATGGTGTCCTTTTGGAAATGAGTTTGCCATGGATGGCCTAACCTGACAGCAGCACATGGTTGAGAGGTTGATGCTCAAAGTAAAGTGTGTCAGCTGCTTAACTACTAGGGCGAGGACAAGTTACTGGCAGAGATGAGCAGATGGTCCACTCCTCGCTTCCCCGCGAGTAGGCACGACTTGAGGAAGATGGGCATCACCTCTGGCAAGGAGATTGGCACTATCCTACAGAACCTACGAGACATGT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110527880 True 937 mRNA 0.48 5 46461710 46468087

Neighbor

gene id symbol gene type direction distance location
LOC110527879 LOC106582859 coding upstream 9776 46388958 ~ 46451934 (+)
LOC110527877 LOC106582857 coding upstream 119740 46338813 ~ 46341970 (+)
foxp1b LOC106582854 coding upstream 252157 45997787 ~ 46209553 (+)
LOC110527875 NA coding upstream 464591 45992287 ~ 45997119 (+)
prok2 LOC106582788 coding upstream 494541 45964395 ~ 45967169 (+)
LOC110527881 LOC106582781 coding downstream 10257 46478344 ~ 46479954 (+)
LOC110527882 LOC106582861 coding downstream 115678 46583765 ~ 46596389 (+)
LOC110528958 NA coding downstream 161504 46629591 ~ 46638492 (+)
LOC118965406 NA coding downstream 166127 46634214 ~ 46634266 (+)
itpr1b LOC106582863 coding downstream 192238 46660325 ~ 46800771 (+)
G614075 NA non-coding upstream 19794 46441691 ~ 46441916 (+)
G614074 NA non-coding upstream 20903 46440516 ~ 46440807 (+)
G614067 NA non-coding upstream 32855 46428558 ~ 46428855 (+)
G614063 NA non-coding upstream 39107 46422314 ~ 46422603 (+)
G614004 NA non-coding upstream 90716 46370772 ~ 46370994 (+)
G614038 LOC100136012 non-coding downstream 1950 46470037 ~ 46470483 (+)
G614083 NA non-coding downstream 2835 46470922 ~ 46471113 (+)
G614237 NA non-coding downstream 55748 46523835 ~ 46524124 (+)
G614258 NA non-coding downstream 77731 46545818 ~ 46546118 (+)
G614277 NA non-coding downstream 99231 46567318 ~ 46567677 (+)
G613664 NA other upstream 182377 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 2433482 44002556 ~ 44035143 (+)
G610622 NA other upstream 2629830 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 2876814 43584020 ~ 43584896 (+)
G610436 NA other upstream 3050904 43410391 ~ 43410806 (+)
G615624 NA other downstream 1371301 47839388 ~ 47839722 (+)
G617133 NA other downstream 2358740 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 3104233 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 3835343 50303430 ~ 50304232 (+)

Expression


Co-expression Network