LOC110528958



Basic Information


Item Value
gene id LOC110528958
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46629591 ~ 46638492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC110528958
ATGTGCACCATAGAACAGCATGATGCCAAATGTGCCAACTGTGGGGGGGATCCCACTCTGCTGCCCTCCAAGCAGTGCCCTACCTACCTGGCCTTGTATTCTCCAGAGAATGTCCAGGGGCCAGGACGTCACATAGACCCCAGTGAGGTAATTCTTCCAGGATGCTCCTGCTACACCTACTCCTGCCTGAGAGAGAGCTCCTCCTGCCTGCAGACATACGGACAGACATACGACAGGCTGTCACCAGGACCAGAGGAGATACATTCAATTGTTACTGCAGGCCTGTGCTTGAGTGTAACGCCTTGTGTGGCTGTAGTGAGGTCTGCAGGTAACCAGGTGGTCCAGAGAGGCCTGGGGTTCAGGTTGTGTGTCTACCCCACAGAGGACAGGGGCTTGGGGGTGCGAGCTCTGGAGCCCATTTCCTGTGGGACCTTTGTGTGTGAGTATGCTGGGAAAGTGCTCTGCTTTGAGGAGGCCAGGCATAGAAAGCTTGCACAGGGGCCTGAGGACAACAACTACATCATTGCTGTGCGGGAGTATGCTGGACAGGGCCCAGTCAATGAGACCTTTGTGGACCCTATTGTGGTTGGGAATGTGGGGCGATTTCTGAACCACTCCTTCCAGCCCCACCTGTTCATGGTGCCTGTCCAGGTGCACTCCCTGGTGCCCAGGCTGGCCCTGTTCACTGGCAGGGACATCACCCCTCAAGAGCTCACATTTGACTATTCAGCGAGCTATAGAAATACACACTCTATGGGTTGGTTCAGAGTGACCCTGGGACAGAAGCCAATGGGACAGATACCCTCCAGAGGAAACCATACTGCTGTGGTGCACAGAACTGTGCCCAATTCCTGCCACTGGACATACCTGTTCTCAACAATTAGATAGAGGAAGGTGGTTATTTGTTTCATATCTGTAAGTTGATGTTTTGTAACTTGAAGTGATCGTGTTGTACTGGAAAGGAGAGACATTTTGCACAG
>TU699203
ggctctgcatagaagaatgggagaaactccccaaatccagTATTCTCCAGAGAATGTCCAGGGGCCAGGACGTCACATAGACCCCAGTGAGGTAATTCTTCCAGGATGCTCCTGCTACACCTACTCCTGCCTGAGAGAGAGCTCCTCCTGCCTGCAGACATACGGACAGACATACGACAGGCTGTCACCAGGACCAGAGGAGATACATTCAATTGTTACTGCAGGCCTGTGCTTGAGTGTAACGCCTTGTGTGGCTGTAGTGAGGTCTGCAGGTAACCAGGTGGTCCAGAGAGGCCTGGGGTTCAGGTTGTGTGTCTACCCCACAGAGGACAGGGGCTTGGGGGTGCGAGCTCTGGAGCCCATTTCCTGTGGGACCTTTGTGTGTG

Function


NR:

description
histone-lysine N-methyltransferase SETMAR-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
LOC110528958 False 980 mRNA 0.55 2 46629591 46638492
TU699203 True 386 TUCP 0.55 2 46632122 46637954

Neighbor


gene id symbol gene type direction distance location
LOC110527882 LOC106582861 coding upstream 33202 46583765 ~ 46596389 (+)
LOC110527881 LOC106582781 coding upstream 149637 46478344 ~ 46479954 (+)
LOC110527880 NA coding upstream 161504 46461710 ~ 46468087 (+)
LOC110527879 LOC106582859 coding upstream 177657 46388958 ~ 46451934 (+)
LOC110527877 LOC106582857 coding upstream 287621 46338813 ~ 46341970 (+)
itpr1b LOC106582863 coding downstream 21833 46660325 ~ 46800771 (+)
bhlhe40 LOC106582864 coding downstream 167955 46806447 ~ 46810462 (+)
sema3fb LOC106582865 coding downstream 297796 46936288 ~ 47029549 (+)
LOC110527889 LOC100380687 coding downstream 658246 47296738 ~ 47302095 (+)
LOC110527899 LOC106582878 coding downstream 872508 47511000 ~ 47524578 (+)
G614278 NA non-coding upstream 59287 46569885 ~ 46570304 (+)
G614277 NA non-coding upstream 61914 46567318 ~ 46567677 (+)
G614258 NA non-coding upstream 83473 46545818 ~ 46546118 (+)
G614237 NA non-coding upstream 105467 46523835 ~ 46524124 (+)
G614083 NA non-coding upstream 158478 46470922 ~ 46471113 (+)
G614405 NA non-coding downstream 138770 46777262 ~ 46777720 (+)
G614422 NA non-coding downstream 165033 46803525 ~ 46803816 (+)
G614424 NA non-coding downstream 166530 46805022 ~ 46805250 (+)
G614649 NA non-coding downstream 173309 46811801 ~ 46812020 (+)
G614655 NA non-coding downstream 179414 46817906 ~ 46818129 (+)
G613664 NA other upstream 350258 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 2601363 44002556 ~ 44035143 (+)
G610622 NA other upstream 2797711 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 3044695 43584020 ~ 43584896 (+)
G610436 NA other upstream 3218785 43410391 ~ 43410806 (+)
G615624 NA other downstream 1200896 47839388 ~ 47839722 (+)
G617133 NA other downstream 2188335 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 2933828 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 3664938 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 4322002 50960494 ~ 51079129 (+)

Expression



Co-expression Network