LOC110527887 (LOC106582866)


Basic Information

Item Value
gene id LOC110527887
gene name LOC106582866
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47045318 ~ 47141560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609476.2
TCCTCTTCATTGTGCGTtaacctactgtatgtagcctattcCGCCCCTCGTTCCCTCACGGTGCTGAACTCGACGCGAGAGGCACAACATATGGTAAAAAAAAGAGCGCTGGAATTTATTTGCATTGTTTTAGAAATAAGTACTTCGTTCAAAGCTAAGTAGAAAGGTCGTTATATTTGCAGTAACAATCACGAGAACAGTCGAGTGGAAAAAGTCAGTGGATTCAACGTTTATTGAGACATTTGCTGATAAGAAAAACATCAGAGATATAGAAAGCCCCCCTTGCAGGGCTGCTGTCTGGGTGAGGGTCACACTGCAGAGTGCTGTAAAGTGTCTCACGCAATCGATCGCTTCTCCCCGTTGGAAGATTAAGgGCAGGATTGGCCATGCCATTTGGCTGTTTGACGCTGGGGGAAAAGAAGGATTACAACAATCCCTCAGAGGTGACAGATAAATATGACCTGGGACAGATTGTTAAATCAGAGGAGTTCTGCGAGATCTTCAGGGCCAAGGACAAAAATACACTGAAAATGTTTACTTGTAAAAAGTTCCTGAAAAAGGATGGAAGGAAAGTTCGGAAGGCTGCAAAAAACGAGATCCTTATTTTAAAGATGGTGAAGCACCCCAATATTCTTCAGCTGGTGGATTTCTATAAGACCAGAAAAGAGTACTTCCTCTTTCTTGAACTTGCTACTGGCAGAGAGGTATTTGATTGGATCCTGGACCAGGGCTACTATTCAGAGCGCGACACCAGTAATGTGGTCCGTCAGGTGTTGGAGGCCGTGGCCTATCTTCACTCCCTGCACATTGTCCACAGGAACCTCAAGCTGGAGAATTTGGTGTACTTCAACCGCCTGAAGCACTCTAAAATAGTGATCAGTGATTTCCACCTGGCAAAGCTGGAGACCGGGCTCATCAAAGACCCCTGTGGAACCCCAGAGTACCTTGCACCAGAAGTGGTTGGGAGACAGAGATACGGCAGGCCAGTGGACTGCTGGGCCCTGGGTGTCATCATGTACATACTGCTTTCAGGCAACCCTCCTTTCTATGAGGaaactgatgatgatgattatgaaaaCCACGACAAGAACCTGTTCAGGAAGATCTTGGCGGGGGACTATGAGTTTGACTCTCCGTACTGGGACGACATCTCAGAGTCAGCAAAAGGCCTGGTCGCCCGTATGATGGAGGTAGACCAGGATCAGAGGCTGACTGCTCAGGAGGCCATCAACCATGAGTGGATCTCTGGAAATGCAGCCTCAAATAAGAATATTAAGGATAATGTCTGCGCACAGATAGAGAAGAACTTTGCTAAAGCCAAGTGGAAGAAAGCGGTGCGGGTTACTACCATCATGAAGCGACTGAGAGCTCCAGAACAGAGTGCTGACTCGGGGGCAACCATCCCAGCAGTAGTAACCAGCTCTGCAGCAGGAGAACCCTCCCCAGCTCCTGCAGACCCCCAGGCTCTCAGTGACCCCTCTACAGCTACCGCTGCTGCAGCCCCTGAGGGGGAGCCTGCTGCTGTCAAAGAGCCCCCTGCTGGCATGGAGGCTGTGGCGTGTGATGCCACTCCCCAAGGTGCAGCAGAGGTCACAGCTCCACCCCCGGCCCCTGAGGAGGCCAGCCCAGTGGAGGCCCCAGTTGAAGCCCCGGAGGAGGTTGATCCGTTGTCACTGTGTAACGGAGAGTCCCCGACTCCCCTCCAACCAGCAACTGAAGTTGACGATGGGCAGGGTTAGACGGTGAACTCCCTCCTATGACCTCCTTCACTCCCAGCGATCGTCTTTCCTGCACACTAGCATGGTGACACTGACTTATCTCTCTCACTTGCAGCATGAGTAACATCTCACAGAGCCTTTGTCCTATCTTTCCTGAGTGTTGAATTGATCTGGCTACATGTATTCTGTGTTTTTGAAACATCCCTCTGGCCTTACAGGGGCTTTTTGTGTCTAATGCAGCGCAGCTAACAGTTACATATTTTCCTCTGAACTCTCCCCTTTAAAGCATATGGAAATATGTAATTGTACCAAACCTGCTTTGGGAACATTTTTACCCAGTCCTACTCTCACAGTATTCCAATGCATTATCATGGCATACAATAAGGTAATGAACAGCTTGGCTTTGCTCTTGTAGTGTTGATTTTACATAATGATCTGTAGCATTCCTCCTTTACACCCCTCTCTACACATGGAAAGATCCTGTTTGATCTCTTTTTGGGGGGTGAACATTGCTCTCTTTGTTATTTGTTGTATACACTCATCAGTAGTTTTGTCTGTGCTGCAGCAATTATGTTTACTGGGGGATGCAGCAGGCCCAGTGTAAGTGAAAGGCAGCATCCACAACATGCTGGGTTAAATGTGAAAGacatatttcagttgaatgcattcagtttaccaactgactaggtatcccccaaTCCCTTTCCCTCGCCAGCTTTCTGCTTAGGAAGGCACCACGTGGCTGTCAGTGTAAAGATTCTGTATATAGAGACCTTTGTAGAAGTAGTAAAAACGGCATGCATTCTTAACTTTTGCTGTTAATTTCAAAATTATAAGCACTTGGTGGAAAGAACGTGGTAATCCTGCTAACATTAAGGTCTTTCTGTTCGTTAGGCTCCAAGTGGAGGGCACTGGTGATGCTCATGTACTGTTCAAATGGACTACATAATTCCATAAACTTCTAACTTAAACATCAAGTGCCACTACTGTAAATGTACGATATATTAAATAAGTTGTGTTTGTTACACAGTAGTTTCTATGAATCTAGAATTCATTTTGTAGCTCATCTTTATGAATTTCACGGCAGGCCTCAGTCATAACATATCTTCATCCATCCTATGCGATTAGATCAACTTCTATaaaattattcttttttttttcattccgTTTCTGGTTTAACAGTTCTTCTGGGTTATTTATTCTTATACATCCTAAAGTACGTAGATCCATTTGTAAATACATATAATTTAGCCTACAAGGATCAATCATGATATTCTTTTCACAGTTGTATAACATTAGATTGTGACTGTGTAAAGCACCACCTGTAAAAGCCATTTCTTCCCCCCTccagcttttttttttacaagttgTTGTTGATTAAAGGAAACAGAATAATTAAGAGCAA
>XM_021609477.2
CCTCTATGCCCCACCACTCGTGTGTGTTCCATCCTCTTCATTGTGCGTtaacctactgtatgtagcctattcCGCCCCTCGTTCCCTCACGGTGCTGAACTCGACGCGAGAGGCACAACATATGGTAAAAAAAAGAGCGCTGGAATTTATTTGCATTGTTTTAGAAATAAGTACTTCGTTCAAAGCTAAGTAGAAAGGTCGTTATATTTGCAGTAACAATCACGAGAACAGTCGAGTGGAAAAAGTCAGTGGATTCAACGTTTATTGAGACATTTGCTGATAAGgGCAGGATTGGCCATGCCATTTGGCTGTTTGACGCTGGGGGAAAAGAAGGATTACAACAATCCCTCAGAGGTGACAGATAAATATGACCTGGGACAGATTGTTAAATCAGAGGAGTTCTGCGAGATCTTCAGGGCCAAGGACAAAAATACACTGAAAATGTTTACTTGTAAAAAGTTCCTGAAAAAGGATGGAAGGAAAGTTCGGAAGGCTGCAAAAAACGAGATCCTTATTTTAAAGATGGTGAAGCACCCCAATATTCTTCAGCTGGTGGATTTCTATAAGACCAGAAAAGAGTACTTCCTCTTTCTTGAACTTGCTACTGGCAGAGAGGTATTTGATTGGATCCTGGACCAGGGCTACTATTCAGAGCGCGACACCAGTAATGTGGTCCGTCAGGTGTTGGAGGCCGTGGCCTATCTTCACTCCCTGCACATTGTCCACAGGAACCTCAAGCTGGAGAATTTGGTGTACTTCAACCGCCTGAAGCACTCTAAAATAGTGATCAGTGATTTCCACCTGGCAAAGCTGGAGACCGGGCTCATCAAAGACCCCTGTGGAACCCCAGAGTACCTTGCACCAGAAGTGGTTGGGAGACAGAGATACGGCAGGCCAGTGGACTGCTGGGCCCTGGGTGTCATCATGTACATACTGCTTTCAGGCAACCCTCCTTTCTATGAGGaaactgatgatgatgattatgaaaaCCACGACAAGAACCTGTTCAGGAAGATCTTGGCGGGGGACTATGAGTTTGACTCTCCGTACTGGGACGACATCTCAGAGTCAGCAAAAGGCCTGGTCGCCCGTATGATGGAGGTAGACCAGGATCAGAGGCTGACTGCTCAGGAGGCCATCAACCATGAGTGGATCTCTGGAAATGCAGCCTCAAATAAGAATATTAAGGATAATGTCTGCGCACAGATAGAGAAGAACTTTGCTAAAGCCAAGTGGAAGAAAGCGGTGCGGGTTACTACCATCATGAAGCGACTGAGAGCTCCAGAACAGAGTGCTGACTCGGGGGCAACCATCCCAGCAGTAGTAACCAGCTCTGCAGCAGGAGAACCCTCCCCAGCTCCTGCAGACCCCCAGGCTCTCAGTGACCCCTCTACAGCTACCGCTGCTGCAGCCCCTGAGGGGGAGCCTGCTGCTGTCAAAGAGCCCCCTGCTGGCATGGAGGCTGTGGCGTGTGATGCCACTCCCCAAGGTGCAGCAGAGGTCACAGCTCCACCCCCGGCCCCTGAGGAGGCCAGCCCAGTGGAGGCCCCAGTTGAAGCCCCGGAGGAGGTTGATCCGTTGTCACTGTGTAACGGAGAGTCCCCGACTCCCCTCCAACCAGCAACTGAAGTTGACGATGGGCAGGGTTAGACGGTGAACTCCCTCCTATGACCTCCTTCACTCCCAGCGATCGTCTTTCCTGCACACTAGCATGGTGACACTGACTTATCTCTCTCACTTGCAGCATGAGTAACATCTCACAGAGCCTTTGTCCTATCTTTCCTGAGTGTTGAATTGATCTGGCTACATGTATTCTGTGTTTTTGAAACATCCCTCTGGCCTTACAGGGGCTTTTTGTGTCTAATGCAGCGCAGCTAACAGTTACATATTTTCCTCTGAACTCTCCCCTTTAAAGCATATGGAAATATGTAATTGTACCAAACCTGCTTTGGGAACATTTTTACCCAGTCCTACTCTCACAGTATTCCAATGCATTATCATGGCATACAATAAGGTAATGAACAGCTTGGCTTTGCTCTTGTAGTGTTGATTTTACATAATGATCTGTAGCATTCCTCCTTTACACCCCTCTCTACACATGGAAAGATCCTGTTTGATCTCTTTTTGGGGGGTGAACATTGCTCTCTTTGTTATTTGTTGTATACACTCATCAGTAGTTTTGTCTGTGCTGCAGCAATTATGTTTACTGGGGGATGCAGCAGGCCCAGTGTAAGTGAAAGGCAGCATCCACAACATGCTGGGTTAAATGTGAAAGacatatttcagttgaatgcattcagtttaccaactgactaggtatcccccaaTCCCTTTCCCTCGCCAGCTTTCTGCTTAGGAAGGCACCACGTGGCTGTCAGTGTAAAGATTCTGTATATAGAGACCTTTGTAGAAGTAGTAAAAACGGCATGCATTCTTAACTTTTGCTGTTAATTTCAAAATTATAAGCACTTGGTGGAAAGAACGTGGTAATCCTGCTAACATTAAGGTCTTTCTGTTCGTTAGGCTCCAAGTGGAGGGCACTGGTGATGCTCATGTACTGTTCAAATGGACTACATAATTCCATAAACTTCTAACTTAAACATCAAGTGCCACTACTGTAAATGTACGATATATTAAATAAGTTGTGTTTGTTACACAGTAGTTTCTATGAATCTAGAATTCATTTTGTAGCTCATCTTTATGAATTTCACGGCAGGCCTCAGTCATAACATATCTTCATCCATCCTATGCGATTAGATCAACTTCTATaaaattattcttttttttttcattccgTTTCTGGTTTAACAGTTCTTCTGGGTTATTTATTCTTATACATCCTAAAGTACGTAGATCCATTTGTAAATACATATAATTTAGCCTACAAGGATCAATCATGATATTCTTTTCACAGTTGTATAACATTAGATTGTGACTGTGTAAAGCACCACCTGTAAAAGCCATTTCTTCCCCCCTccagcttttttttttacaagttgTTGTTGATTAAAGGAAACAGAATAATTAAGAGCAA

Function

NR:

description
caM kinase-like vesicle-associated protein isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08812 CAMKV; CaM kinase-like vesicle-associated

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609476.2 False 3123 mRNA 0.45 12 47045318 47141529
XM_021609477.2 True 3034 mRNA 0.45 11 47045318 47141560

Neighbor

gene id symbol gene type direction distance location
praf3 praf3 coding downstream 584994 46457015 ~ 46460324 (-)
LOC110527878 LOC106582858 coding downstream 670356 46341988 ~ 46374962 (-)
LOC110528957 LOC106565741 coding downstream 711691 46317529 ~ 46333627 (-)
gpr27 LOC106582853 coding downstream 1073306 45969430 ~ 45972012 (-)
LOC110527871 LOC106582850 coding downstream 1294481 45734357 ~ 45750837 (-)
LOC110528959 LOC106582867 coding upstream 3345 47144905 ~ 47146014 (-)
LOC110527888 LOC106582868 coding upstream 118765 47260325 ~ 47284791 (-)
LOC110527117 LOC106565757 coding upstream 147930 47289490 ~ 47294719 (-)
LOC110527890 LOC106582870 coding upstream 161130 47302690 ~ 47337079 (-)
LOC110527893 LOC106582872 coding upstream 195675 47337235 ~ 47345317 (-)
G615034 LOC106582865 non-coding downstream 20254 47024405 ~ 47025064 (-)
G614951 NA non-coding downstream 125638 46919416 ~ 46919680 (-)
G614947 NA non-coding downstream 135069 46909971 ~ 46910249 (-)
G614939 NA non-coding downstream 148841 46896276 ~ 46896477 (-)
G614938 NA non-coding downstream 149123 46895994 ~ 46896195 (-)
G615165 NA non-coding upstream 61862 47203422 ~ 47203641 (-)
G615178 NA non-coding upstream 69296 47210856 ~ 47211478 (-)
G615186 NA non-coding upstream 73606 47215166 ~ 47215444 (-)
G615251 NA non-coding upstream 84239 47225799 ~ 47226727 (-)
G615254 NA non-coding upstream 87621 47229181 ~ 47229467 (-)
G613411 LOC106582852 other downstream 1169618 45874965 ~ 45875700 (-)
G611674 NA other downstream 2559566 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 3465354 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 3508353 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 3606405 43435578 ~ 43439076 (-)
G616880 NA other upstream 1345487 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 2042864 49184424 ~ 49186096 (-)
G617632 NA other upstream 2054044 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 2153695 49295040 ~ 49297305 (-)

Expression


Co-expression Network