LOC110528959 (LOC106582867)


Basic Information

Item Value
gene id LOC110528959
gene name LOC106582867
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47144905 ~ 47146014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611125.1
ATGACTGCAGTGGATAGCAGTGAGGACTTCAAGCAGAATGTGGCTATTGTAATCGACCCAGGATCAGGCTCCATCAAAGCTGGCTTCTCTGGAGATGAGAAGCCCCATAAAGTTCTGAGGTCAGTGGTTGGATTGTCCAAAAAGGACCAAACTGAATGTTATTTTGGAAACAACATTCCCTGCAAGGACTCAGATGATCTCATCCTCAAGAGGCCCATCACCAGTGGAATGATAAGTGACTGGGATTCCCTGGAGAAGCTGTGGAGCCATGTGCTCTATGAGGAGCTCCAAGTCTGCCCTGAAGAGCATGGCATCCTGATGACTGACCCAgccttctctcccatctccaacCGAGAGAAGACAGCTGAACTCCTGTTTGAAGGGTTTGGGGCCCCAGCGATGTATGTTGGTTACCAGCCTGTGCTGTCCATGTATTCTTATGGACTGGTTACTGGTCTAGTGGTGGACTCTGGGGCTGGCTGCACCTCTGTCTCTCCagtgtgcaatggctactgcttaCCACATGCCACATTTCACATGGACCTGGCTGGAAAGGGTGTGTCTGACTATCTGAGCAAACTACTGGCCGACGTTGGACATGGGAGTGCTCTCCAGCAAAAGTCCTCTGTGCAAGACATGAAGAAGCAGAGTTGCTACGTCTCCCAGCTGAGTTCTGAGGACAAAGGAACACCTCTGGACTATCAACTCCCCGATGGCACCACCCTTACCCTGTGCGACGAGCGCTTCCGTGGCCCTGAGATCCTATTCTGTCCATCCGACGCAGGAATGTCGCAGCCCGGAGTTCACATCCTGGCCATGAACAGCCTGCAGAAGTGCGCCCCCGAGTGGCAGACGGCCTTGATGGCCAACGTGGCCCTGTGTGGCGGCTCCTCGATGTTCAGCGGTTTCCCGGAGCGGCTCCAGGCAGAGATGGAGAAACTGGCCCCGAGGGACTCCATGATCGGGATGCTATCTGGGGCCCACAGGGAGTTTGCCTCCTGGGTGGGGGGCTCCATCATCACCTGCCTCAGCAGCTTCCAGCCCATGTGGGTGAAGGGGCAGGATTACCAGGAGGAGGGCTCCAGTGTGGTGCGCAATAAATGCTATTAG

Function

NR:

description
actin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611125.1 True 1110 mRNA 0.55 1 47144905 47146014

Neighbor

gene id symbol gene type direction distance location
LOC110527887 LOC106582866 coding downstream 3345 47045318 ~ 47141560 (-)
praf3 praf3 coding downstream 684581 46457015 ~ 46460324 (-)
LOC110527878 LOC106582858 coding downstream 769943 46341988 ~ 46374962 (-)
LOC110528957 LOC106565741 coding downstream 811278 46317529 ~ 46333627 (-)
gpr27 LOC106582853 coding downstream 1172893 45969430 ~ 45972012 (-)
LOC110527888 LOC106582868 coding upstream 114311 47260325 ~ 47284791 (-)
LOC110527117 LOC106565757 coding upstream 143476 47289490 ~ 47294719 (-)
LOC110527890 LOC106582870 coding upstream 156676 47302690 ~ 47337079 (-)
LOC110527893 LOC106582872 coding upstream 191221 47337235 ~ 47345317 (-)
LOC110527892 LOC106582871 coding upstream 199366 47345380 ~ 47357081 (-)
G615078 NA non-coding downstream 49969 47093998 ~ 47094936 (-)
G615050 NA non-coding downstream 82975 47061540 ~ 47061930 (-)
G615034 LOC106582865 non-coding downstream 119841 47024405 ~ 47025064 (-)
G614951 NA non-coding downstream 225225 46919416 ~ 46919680 (-)
G614947 NA non-coding downstream 234656 46909971 ~ 46910249 (-)
G615165 NA non-coding upstream 57408 47203422 ~ 47203641 (-)
G615178 NA non-coding upstream 64842 47210856 ~ 47211478 (-)
G615186 NA non-coding upstream 69152 47215166 ~ 47215444 (-)
G615251 NA non-coding upstream 79785 47225799 ~ 47226727 (-)
G615254 NA non-coding upstream 83167 47229181 ~ 47229467 (-)
G613411 LOC106582852 other downstream 1269205 45874965 ~ 45875700 (-)
G611674 NA other downstream 2659153 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 3564941 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 3607940 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 3705992 43435578 ~ 43439076 (-)
G616880 NA other upstream 1341033 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 2038410 49184424 ~ 49186096 (-)
G617632 NA other upstream 2049590 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 2149241 49295040 ~ 49297305 (-)

Expression


Co-expression Network