LOC110527117 (LOC106565757)


Basic Information

Item Value
gene id LOC110527117
gene name LOC106565757
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47289490 ~ 47294719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110527117
TCATCTTCACAGGTGCTGGCCATGAGAGTGTTTGTTCATGTACAGTCCTTTGAGGACCTGACTGCTGACAGTGAGGTGACTACTGAGATCGAAACTGAAAGAGAGACTGTGCTTTGGGAGTCAAGACCGTCTGTAAAGGAGGAGGCTCTGTGTCTGGGGGCTGAGGAGGAGACCCAGAAGGAGCAGCAGCAtaaggtggaggtagaggaggaggtgtgccCAGAAAGCAGGATTAAGGAAGAGGATGTGTGCAGTGAGGCCTGTCGTAGCCACAGGAAACATGTTTGTACTGAGCGAGGCAGGCAAGCCCATCTACTCACGCTACGGCACAAAGGAGGCCCTCTCCAACACCATGGGGGTCATGATGGTGCCTGGCCTTCGTCGTGAAGGCAGACAACAGTATAATTTGCTCCATTCACACAGACAGTTACAAAGTGGTGTTCCTTCGCGAAACTCCTCTGGTCCTGGTGGGCGTATCCCGTACCTGTCAGTCAGATAGAGAGCTGACGCGTGAGCTGCAGTACATCTACTACCAGATCGTCCGCCAGCTCAACCTCACCCAGCTCAACCACATCTTCCAGCACAAGCAGAACTATGACCTGGGCCGCCTACTGACAGGCTCCGAGCATCTCACGGACAACCTGCTGCGTCTGTTGGACCGTGACCCGGGCCTGCTCGTCAGCACTGTCACTTGCCTCCCCCTTGCCAGCTCCACCAGCGACTTGGTCTCCTCCAGGCTGCCAAGACCAAGAACCTGGTCTTTTCCATCCTCCTGGCTGGGGACTGCCTGGTCTCTCTGGTACGCAAGAAGGACCAGTACCTGCACCATATGAACCTGCACCTGCTCTTCAACCTGGTGGGCGTCATATTTCCGCGAGGGTGAAGGCTGGACGCCCATCTGCCACCCTAAGTTCAGCACTGCTGGCTTCTTCCACACCCACATCTCTTACCTGGAACTGGCCTCTGACCTTTGCTTCATCCTGGTGTCCGCCGACCGGGAGGAATTTTTTTACCTTTCTGATTGCAAGCACTGCTTCCTGGAGCGGCTGAGCCAATGCACTGCCTACAAGGCCTTGAAGGAGGCGCTGAAGTGCCCCAGCTACTCTGTCAAGCCAGGTCGACATCCCAGAGCTCAGGCACTTTCTGTACAAGTCCAAGAGCTCTGGAATCTACACAAGCCCTGAGCTGCCCCTGCTATACCAATCtgtagaggagcaggagaggcTGATGGGATTGTACCAGTACCTCCAAAGCCACTTGCACCACCCGACACGCCCCCTGCGCTCCATCTACCGCTGTGGAGAGACTGAGAACATGCTGGCCTGGGTGACAAGTGGCATTGAGCTCTACCGCTGTTTCAGTCCCTTGGGGACCAAGGCCGTGGCCGCTGTTAATAAGCTGCTGGAGTGGATCAAGAGGGAGGACGACTGCCTCTTTGTCCTCAGTTCCCTGACATACTGAGCCCACAGCTGACCTAGCTACAGTACTAAGAAACCCTGGCCCTCTAAACCTGCTTCCTTGTGACCTTGAAGACGGATGGACACTATTGTAGGTCATGGATGTAATGCCAACAAATCATCATGCATCACTTTTGTGCATATGCAGTCTGTTTGCTCTTTGCAGATTCTTCAGTCTATGGTCATCAGGGGGTAAAATTAGGTAATCACAATGAGGGTAAAGCTATGTTTTATCAAACAGAATTTCATGATTTTAATTGGTGGTTGACTTATTGGGACTTGAGAGATATGCAGTAGACATTTCTATTAATAACAATGCTGAAATCTGTGATGGGTGTCCAAATTGCTATAAGATGATGATTATTTGAAACTGTAATAGACCTGTCGTTAATTTGCCATATGTTAATAATTATAATGTGCCCTGCCAACGTATCGCCACGGTCCGTGCCATGGTAAAACGTGCGCTCCTGTAGATTTGAAATAATTGCATAGTGAACGTTTTATCCAGGTGAGCCAGCCAACCAGAAAAACAAGGTGAAGCAATTCAGGCATTAttgaaagtcaggacaatccTTGTCCTGGAAGAAACAATGTGTATAGTTGAGAAAAAAGATGAAGCAAGCAGTAGGGATTTATACTTAAATGTGGAGTGGAGCTTTAGCTATAGTTACGTGATCACAACGTGCCCGGGTACCTTCAAAATGATTCAGCAATCATAATTTATTCGAAAAACAGTTTCCATCATTTGTTGCAATTATGTCAGTTGTGCAGAGGTGAGGACGGAGTCAAGCGCAGGACACAGAATTGAGTAAAATAACGTACTTTAAAAAAAGTAAAATATATCAGCCAACATAATCCACGCAGGGATAGTCACACATAAAACATaatgggaaccagagggttaaatagggaaataataataacttaatgggaaccaggtgtgtacactcaagacataacaaatggaaaaataaacatggatcggtggcagctagaaagccggtgacgacaACCAccgaacgtcgcccgaacaaggagaggcaccaacttcagcggaagtcgtgacaaattAAGAAAGCCAGACAAAATAAGAATCCACCCGTTGAGCAGATAAAAATGACGCTGTTTAGAACAGTTCTCTTATAGTTGCCGTTTCCATTACACGTcctaatgttgtttttttgcgaCTTGTTTTTGTCAAATACACGTGGGTCAATGGAAACATGCCTTCTATTGTCAAAAGAGTCCGTAATGGTTAGCTCATTAATTGATGAAACCAAGAAAGATTAATCTCACTTTCTGACTGTAATGCAGTTAGCCCCATGCACTCTACTTACAGTACTGTATATGCACCTACTTTAAACACATACTTCTATTAATTCCACTCTTTTGTTTATCTGCATACTCCAAGGGGAAAAGTCTCCCATGATTACAGTTGTGTTGCTCAGATTAgttattttaattattatttgtGTCTTTATTTGTTGCTTGGGTTTTGGATGAAGGATTTCACTGTCAAAGGTGATCTGCTTGGGAAAGTATCTTGTGGTATAGTGGGCTAAAGCTGAATGAGAGCATGCAGGTCATGcaaaataatgttatcaggtatatGCTGAATGTCCCCCCTAGGACCCACATAGGGATGCAGGAGTTCCGGGAGGTGGACTTGTTGCCTTTGGAGTCCAGAGTGGACCAACTTAAACTGAATCATGTTTGACATCTTAAATGATTGTGCCCCAGGTTACATGAAAAACCACATTGATATGGTCTATAACCAACACAGTCACAATACCAGCCCTAGTGTTTTGTCTTGTAAAATCCCAAGAGTAAACAGTACTGCGAGGAGCATTTTTTTTCCATACAGGTATGTCTGTGGAATAGCCTTCCCTTGGAGATCAAGCAAATTAATAGTAAAAGTAGCTTTAAAAAGCAGGCAAAGGATTTCATTTGGACAAGTTCATTGGACAAGTGTTAATATCTGAATACAACACAGTGTGAGGATTTTGTCTGTAGGCTATCATAAGACAACTGGCATCAGATATGACCTTTGACGCTTAAATAGCTCCGGCCAAACGCTAGGCTACGCCCAGAGACGTTAGTTTCTTCTACGCAATGAgcctggatctgagtacctctcCAAACCTTCACCGAATGCAAACACGTTCTGGGccatctgattggtccagaaactgatgggttgggccaaagccagaacacacgtgggtaaagTGTTGGTTTGAAAATTCTTCATTGGCTTTgacactctgattggttagagacgatCCAATCGCTGATAAAAAATTTTTGTACAACACCCTTCGTCACCACAAAcgacttcaatgatggcagtctcagactaaagtatgtAGCAAACGACAGAGCAGCGGAAGATTTTAGTGTGAGTTGTCAGGGTAGCAATCTGCAGtagctacatccatttttggacttgtaatatgaatgatatgtacccattgattcttaaagGATTTAATTTATAAATGccccatgagcttagttcaactgtcgtattCAATCTGAACACAAactataagcttgttttactccaatgtttctAAACAAAGCGTTAAGGTTTTCTTttgtcgaaggagaggcggaccaaaatgcagcgtggttatttcgatacatgtttaataaaataTAAACATGAACAATAAAC

Function

NR:

description
vacuolar fusion protein MON1 homolog A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110527117 True 4134 mRNA 0.45 4 47289490 47294719

Neighbor

gene id symbol gene type direction distance location
LOC110527888 LOC106582868 coding downstream 4699 47260325 ~ 47284791 (-)
LOC110528959 LOC106582867 coding downstream 143476 47144905 ~ 47146014 (-)
LOC110527887 LOC106582866 coding downstream 147930 47045318 ~ 47141560 (-)
praf3 praf3 coding downstream 829166 46457015 ~ 46460324 (-)
LOC110527878 LOC106582858 coding downstream 914528 46341988 ~ 46374962 (-)
LOC110527890 LOC106582870 coding upstream 7971 47302690 ~ 47337079 (-)
LOC110527893 LOC106582872 coding upstream 42516 47337235 ~ 47345317 (-)
LOC110527892 LOC106582871 coding upstream 50661 47345380 ~ 47357081 (-)
LOC110527894 LOC106582873 coding upstream 65152 47359871 ~ 47389443 (-)
LOC110527895 LOC106582874 coding upstream 94887 47389606 ~ 47403739 (-)
G615256 NA non-coding downstream 58336 47230948 ~ 47231154 (-)
G615254 NA non-coding downstream 60023 47229181 ~ 47229467 (-)
G615251 NA non-coding downstream 62763 47225799 ~ 47226727 (-)
G615186 NA non-coding downstream 74046 47215166 ~ 47215444 (-)
G615178 NA non-coding downstream 78012 47210856 ~ 47211478 (-)
G616058 NA non-coding upstream 131133 47425852 ~ 47496066 (-)
G616112 NA non-coding upstream 246190 47540909 ~ 47541186 (-)
G616162 NA non-coding upstream 352824 47647543 ~ 47749086 (-)
G616328 NA non-coding upstream 714077 48008796 ~ 48009224 (-)
G616358 NA non-coding upstream 752197 48046916 ~ 48047153 (-)
G613411 LOC106582852 other downstream 1413790 45874965 ~ 45875700 (-)
G611674 NA other downstream 2803738 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 3709526 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 3752525 43526691 ~ 43537037 (-)
G616880 NA other upstream 1192328 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 1889705 49184424 ~ 49186096 (-)
G617632 NA other upstream 1900885 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 2000536 49295040 ~ 49297305 (-)
LOC110527961 LOC106565835 other upstream 2365316 49660022 ~ 49936575 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017078 LOC106565757 misc CM030122.1 CM030122.1 44126214 ~ 44137931 (+)