LOC110527889 (LOC100380687)


Basic Information

Item Value
gene id LOC110527889
gene name LOC100380687
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47296738 ~ 47302095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609480.2
GTTATGAACATCATTTAGCTGCTAGATATGCAGCTAAATAGAATAGTTAAGAAGCTGAAAAAGTTTCCTGCGTGTAACGTTACACAAAATATTATTAAATCATAGCTACCTCTAATTTCTTCGAGTCGAGTTAAAATGCATATTGAATGTTGTAACGTTAACCGTTGACTGTCACTGTATAAAATAATACCACTCGCTTGGGCTGGCTAGCACATCATTTTCTGACAGAGAAGGTACAGGGGTGCAATCATTAGTACACAGTttcgttttgcaacagaaacgaGTTTATTTtcgacaaattcagGGTGGTCTTCAAAAATGCCTATTCGTGCCTACTGTACCATCTGTTCAGATTTCTTCGATCACTCCAGAGATGTGGCTGCCATCCACTGTGGGCACACCTTCCACTATGAATGTCTTCTTCAGTGGTTTCAGACCGCCCCCAACAAGACATgtccacaatgtagaaaacagGTTAGCACCAGACACATTATCAACAAGTTGTTCTTTGACattggtggtgaaggagagggatcCTCTGCGGATCCAGAGTGTTTGCAGAACGAGCTCGATAGAATGAAAGCTGTTTTAAGTACCAAAGagagagactggagggacAGACTGAAGATGGTAGAGGGCTTGAAGGAGACTGTGGACAGGCAGAAGAAAGACCTGGACATTGTTAGGAAGGAGATTGGCGAGAAAGATATGCTCTGCTCAGTTCTCAGGAAACAGATGAAATACCTGGAGAACCAGCAGAGTGAGACTCAGGCTGCTAAGGAGGAGGCCCGACGACTCAGGACCAAAATGAAAACATATGAGAGTCTGGATGTGGTGTTACAGGGTCAGAGGGCTGAGGTGGAATCCATGATCAGTGACATGGGTGTTGGCCAGGCTGCCATGGAGGAGCTCTCCATCTACTGCATCTCTCTCAAGAAAGAATATGAGAACCTAAAAGGGAGCCTCAGATATTCAAATGAAATGTCTGAAAAGCTCAAAAGGGAGGTGTTTGCTTCAAACAACAAGTTGCAGAAAGCCACAATGGAGATGAACAGGACCAATGATGACATGAAAGCTGTCCAAAATGACTTGACCAACGCAGACAAAGAGATCACTAGTCTGAAGAAAAaagttgagattcttcaaaagacCCTGAGCACACCAACCCGCACTAACGAAGCCTTGAGCCGACTAGTCTTTGAGAGCCCTGCCCCAGTGCAGCTGCAACAGCCCCGTCTCCACCAGCCTGCCAACAGTGAGGACATTGACCTTAACATGACCTTTGACATCACCACCCCTGACCTGGTGGATAAGAGGGCGTCACAGGTCCCATCCAAAAAGATGCGTCTGGATCCAGCCACGTTGTCGTCCTCGCCAACCAAACACCGTGACAGCGCCTCGTTTGGAAGCAAGgccagagaggaggaggtgcCAATGGGTACATTCTTCCGTAACTCCATTCTGTTCAGGAAGAAGACCTTTGGCAGCATGCTGGACCCCCAGAGGAGTAAACTGGGAGCTGTCAGAAGTGGTTATGATGGACTTGGAGGGAGAACCAAATTCTTCCAACCTTCTCCTTTGTCAGATATTCGCCCGCTCATGATGACGGCAAAGAGAAAAAAGGTTTCCCGACCAGCTCCTCCCAAGATCTCCACCTGTCTTACTCTGGACAGTTATCTGGAGTGACCTATGACCTGTCCATCCCTGACTAATACAGACGTGTCAGATGTACCTCTGACACTAGGGGCCAGCCGGTCTGGAACAATCGAGAGAGGAGCAACCTGAATAGGTTTACCAGTCCAGTAAAAGGACTATGGTCTACTTTGGTTTGCACTTCTTACTTGAGGGCTTGTTCCAGGCTTTGGGCATGAATGGGCACAGTAGATGGTTTGGTGTAGAATATTTGTTTTGGTGTATTGAGACTTCTTTTGTCTCATCATGGAACTACGTAGTaatcttgttttgaggtgtttcaGTTTCATCTAATTGTAATTAAGTGTGCGGTACAGAGTTATTCTGAGAACTTTCCTGTATTATGAGCATCTGTGAAATGTCAGCCATTTGACTGTTGCACATTACAAAAAAATCTCTTGCGCACTTGAACATTTATTGTTTTACTAACGCTGTCTGAATATTGTAATACAGCACTGTATTGAATATTTGTTTCCCACTTCCCCAGAACATCATCATCTTTTAGTGCTATTTATTTTAGATACATACTTTTACTTGTGATTATTGTGTAAGATCTCTTATGTTTGTGAAATAATAAACTATAGTTTCCTTAACTTGA
>XM_021609479.2
TTACGGCAGAACTCAGACTGAAAGAAAGCAGACAGGAAGATATCTGAACGTACCATTTAGATGATTACGTACACGCAAGGGGCGGGGACTTTTACGTTCGAACTGCGCCGCGCGAGTGTTGTGCGTGCTAGCTAGGCGTAAACAGGATTTCATAGTTATTCGAACTGCAATGAATAATATACGTTAATGTAACAAATACTCGATAGCTTTAAGGGTGGTCTTCAAAAATGCCTATTCGTGCCTACTGTACCATCTGTTCAGATTTCTTCGATCACTCCAGAGATGTGGCTGCCATCCACTGTGGGCACACCTTCCACTATGAATGTCTTCTTCAGTGGTTTCAGACCGCCCCCAACAAGACATgtccacaatgtagaaaacagGTTAGCACCAGACACATTATCAACAAGTTGTTCTTTGACattggtggtgaaggagagggatcCTCTGCGGATCCAGAGTGTTTGCAGAACGAGCTCGATAGAATGAAAGCTGTTTTAAGTACCAAAGagagagactggagggacAGACTGAAGATGGTAGAGGGCTTGAAGGAGACTGTGGACAGGCAGAAGAAAGACCTGGACATTGTTAGGAAGGAGATTGGCGAGAAAGATATGCTCTGCTCAGTTCTCAGGAAACAGATGAAATACCTGGAGAACCAGCAGAGTGAGACTCAGGCTGCTAAGGAGGAGGCCCGACGACTCAGGACCAAAATGAAAACATATGAGAGTCTGGATGTGGTGTTACAGGGTCAGAGGGCTGAGGTGGAATCCATGATCAGTGACATGGGTGTTGGCCAGGCTGCCATGGAGGAGCTCTCCATCTACTGCATCTCTCTCAAGAAAGAATATGAGAACCTAAAAGGGAGCCTCAGATATTCAAATGAAATGTCTGAAAAGCTCAAAAGGGAGGTGTTTGCTTCAAACAACAAGTTGCAGAAAGCCACAATGGAGATGAACAGGACCAATGATGACATGAAAGCTGTCCAAAATGACTTGACCAACGCAGACAAAGAGATCACTAGTCTGAAGAAAAaagttgagattcttcaaaagacCCTGAGCACACCAACCCGCACTAACGAAGCCTTGAGCCGACTAGTCTTTGAGAGCCCTGCCCCAGTGCAGCTGCAACAGCCCCGTCTCCACCAGCCTGCCAACAGTGAGGACATTGACCTTAACATGACCTTTGACATCACCACCCCTGACCTGGTGGATAAGAGGGCGTCACAGGTCCCATCCAAAAAGATGCGTCTGGATCCAGCCACGTTGTCGTCCTCGCCAACCAAACACCGTGACAGCGCCTCGTTTGGAAGCAAGgccagagaggaggaggtgcCAATGGGTACATTCTTCCGTAACTCCATTCTGTTCAGGAAGAAGACCTTTGGCAGCATGCTGGACCCCCAGAGGAGTAAACTGGGAGCTGTCAGAAGTGGTTATGATGGACTTGGAGGGAGAACCAAATTCTTCCAACCTTCTCCTTTGTCAGATATTCGCCCGCTCATGATGACGGCAAAGAGAAAAAAGGTTTCCCGACCAGCTCCTCCCAAGATCTCCACCTGTCTTACTCTGGACAGTTATCTGGAGTGACCTATGACCTGTCCATCCCTGACTAATACAGACGTGTCAGATGTACCTCTGACACTAGGGGCCAGCCGGTCTGGAACAATCGAGAGAGGAGCAACCTGAATAGGTTTACCAGTCCAGTAAAAGGACTATGGTCTACTTTGGTTTGCACTTCTTACTTGAGGGCTTGTTCCAGGCTTTGGGCATGAATGGGCACAGTAGATGGTTTGGTGTAGAATATTTGTTTTGGTGTATTGAGACTTCTTTTGTCTCATCATGGAACTACGTAGTaatcttgttttgaggtgtttcaGTTTCATCTAATTGTAATTAAGTGTGCGGTACAGAGTTATTCTGAGAACTTTCCTGTATTATGAGCATCTGTGAAATGTCAGCCATTTGACTGTTGCACATTACAAAAAAATCTCTTGCGCACTTGAACATTTATTGTTTTACTAACGCTGTCTGAATATTGTAATACAGCACTGTATTGAATATTTGTTTCCCACTTCCCCAGAACATCATCATCTTTTAGTGCTATTTATTTTAGATACATACTTTTACTTGTGATTATTGTGTAAGATCTCTTATGTTTGTGAAATAATAAACTATAGTTTCCTTAACTTGA
>XM_036983371.1
ACACAGCCTGCTGTATCGTAGGGTGGTCTTCAAAAATGCCTATTCGTGCCTACTGTACCATCTGTTCAGATTTCTTCGATCACTCCAGAGATGTGGCTGCCATCCACTGTGGGCACACCTTCCACTATGAATGTCTTCTTCAGTGGTTTCAGACCGCCCCCAACAAGACATgtccacaatgtagaaaacagGTTAGCACCAGACACATTATCAACAAGTTGTTCTTTGACattggtggtgaaggagagggatcCTCTGCGGATCCAGAGTGTTTGCAGAACGAGCTCGATAGAATGAAAGCTGTTTTAAGTACCAAAGagagagactggagggacAGACTGAAGATGGTAGAGGGCTTGAAGGAGACTGTGGACAGGCAGAAGAAAGACCTGGACATTGTTAGGAAGGAGATTGGCGAGAAAGATATGCTCTGCTCAGTTCTCAGGAAACAGATGAAATACCTGGAGAACCAGCAGAGTGAGACTCAGGCTGCTAAGGAGGAGGCCCGACGACTCAGGACCAAAATGAAAACATATGAGAGTCTGGATGTGGTGTTACAGGGTCAGAGGGCTGAGGTGGAATCCATGATCAGTGACATGGGTGTTGGCCAGGCTGCCATGGAGGAGCTCTCCATCTACTGCATCTCTCTCAAGAAAGAATATGAGAACCTAAAAGGGAGCCTCAGATATTCAAATGAAATGTCTGAAAAGCTCAAAAGGGAGGTGTTTGCTTCAAACAACAAGTTGCAGAAAGCCACAATGGAGATGAACAGGACCAATGATGACATGAAAGCTGTCCAAAATGACTTGACCAACGCAGACAAAGAGATCACTAGTCTGAAGAAAAaagttgagattcttcaaaagacCCTGAGCACACCAACCCGCACTAACGAAGCCTTGAGCCGACTAGTCTTTGAGAGCCCTGCCCCAGTGCAGCTGCAACAGCCCCGTCTCCACCAGCCTGCCAACAGTGAGGACATTGACCTTAACATGACCTTTGACATCACCACCCCTGACCTGGTGGATAAGAGGGCGTCACAGGTCCCATCCAAAAAGATGCGTCTGGATCCAGCCACGTTGTCGTCCTCGCCAACCAAACACCGTGACAGCGCCTCGTTTGGAAGCAAGgccagagaggaggaggtgcCAATGGGTACATTCTTCCGTAACTCCATTCTGTTCAGGAAGAAGACCTTTGGCAGCATGCTGGACCCCCAGAGGAGTAAACTGGGAGCTGTCAGAAGTGGTTATGATGGACTTGGAGGGAGAACCAAATTCTTCCAACCTTCTCCTTTGTCAGATATTCGCCCGCTCATGATGACGGCAAAGAGAAAAAAGGTTTCCCGACCAGCTCCTCCCAAGATCTCCACCTGTCTTACTCTGGACAGTTATCTGGAGTGACCTATGACCTGTCCATCCCTGACTAATACAGACGTGTCAGATGTACCTCTGACACTAGGGGCCAGCCGGTCTGGAACAATCGAGAGAGGAGCAACCTGAATAGGTTTACCAGTCCAGTAAAAGGACTATGGTCTACTTTGGTTTGCACTTCTTACTTGAGGGCTTGTTCCAGGCTTTGGGCATGAATGGGCACAGTAGATGGTTTGGTGTAGAATATTTGTTTTGGTGTATTGAGACTTCTTTTGTCTCATCATGGAACTACGTAGTaatcttgttttgaggtgtttcaGTTTCATCTAATTGTAATTAAGTGTGCGGTACAGAGTTATTCTGAGAACTTTCCTGTATTATGAGCATCTGTGAAATGTCAGCCATTTGACTGTTGCACATTACAAAAAAATCTCTTGCGCACTTGAACATTTATTGTTTTACTAACGCTGTCTGAATATTGTAATACAGCACTGTATTGAATATTTGTTTCCCACTTCCCCAGAACATCATCATCTTTTAGTGCTATTTATTTTAGATACATACTTTTACTTGTGATTATTGTGTAAGATCTCTTATGTTTGTGAAATAATAAACTATAGTTTCCTTAACTTGA
>TU700244
CGAGTTAAAATGCATATTGAATGTTGTAACGTTAACCGTTGACTGTCACTGTATAAAATAATACCACTCGCTTGGGCTGGCTAGCACATCATTTTCTGACAGAGAAGGTACAGGGGTGCAATCATTAGTACACAGTttcgttttgcaacagaaacgaGTTTATTTtcgacaaattcaggtatgtccCTATTTTCTCCACATTTTCGCTCGTATTGGATACGTTCCCGAATGCTTATATTTTCACTTCACGATGGTTTGCATGGCCTTGATTGCCACAGATTCGTTCATATTTTCGGCGGGTTTAGCTCGCTATTTGTGTTGCGGTTAACACTATTTCAGGGTTGAAAGAATG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609480.2 False 2290 mRNA 0.44 16 47296738 47302095
XM_021609479.2 False 2199 mRNA 0.45 16 47297243 47302095
XM_036983371.1 False 2007 mRNA 0.46 16 47297479 47302095
TU700244 True 352 lncRNA 0.40 1 47296864 47297215

Neighbor

gene id symbol gene type direction distance location
sema3fb LOC106582865 coding upstream 267189 46936288 ~ 47029549 (+)
bhlhe40 LOC106582864 coding upstream 486276 46806447 ~ 46810462 (+)
itpr1b LOC106582863 coding upstream 495967 46660325 ~ 46800771 (+)
LOC110528958 NA coding upstream 658246 46629591 ~ 46638492 (+)
LOC118965406 NA coding upstream 662472 46634214 ~ 46634266 (+)
LOC110527899 LOC106582878 coding downstream 208905 47511000 ~ 47524578 (+)
LOC110527900 LOC106582882 coding downstream 227290 47529385 ~ 47535288 (+)
LOC110527907 LOC106582887 coding downstream 261969 47564064 ~ 47566159 (+)
si:ch211-232b12.5 LOC106582889 coding downstream 319376 47621471 ~ 47639848 (+)
LOC110527910 LOC106582895 coding downstream 409435 47711530 ~ 47715289 (+)
G615292 NA non-coding upstream 1738 47294546 ~ 47295000 (+)
G615247 NA non-coding upstream 11985 47284506 ~ 47284753 (+)
G615232 NA non-coding upstream 28521 47268009 ~ 47268217 (+)
G615231 NA non-coding upstream 29267 47267172 ~ 47267471 (+)
G615230 NA non-coding upstream 29737 47266669 ~ 47267001 (+)
G615353 NA non-coding downstream 55863 47357958 ~ 47417000 (+)
G615357 LOC106582875 non-coding downstream 103826 47405921 ~ 47406613 (+)
G615354 LOC106582875 non-coding downstream 104673 47406768 ~ 47407292 (+)
G615347 LOC106582875 non-coding downstream 105631 47407726 ~ 47408133 (+)
G615346 LOC106582876 non-coding downstream 130948 47433043 ~ 47484418 (+)
G613664 NA other upstream 1017405 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 3268510 44002556 ~ 44035143 (+)
G610622 NA other upstream 3464858 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 3711842 43584020 ~ 43584896 (+)
G615624 NA other downstream 537293 47839388 ~ 47839722 (+)
G617133 NA other downstream 1524732 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 2270225 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 3001335 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 3658399 50960494 ~ 51079129 (+)

Expression


Co-expression Network