LOC110527893 (LOC106582872)


Basic Information

Item Value
gene id LOC110527893
gene name LOC106582872
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47337235 ~ 47345317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609484.2
TCTCGTGGAATGGCAGAGGAGGAGTTGCTTCAAAGGGGATTAGGATACTGATGAGTAGGGTTCAAAACTGCAGCCCGGTCACCCAGTCCATGCAAGGTAAGCCATACCTCCTCTCTTTTCGTTGCTTCCTTCTGTGTTGTCCCTTCTGATCCAACTTATGCGTGAGGTGGGCTGTGAGTGTGTTGATGACTGAAAGCGGGCTTTCTCTAGTGAGACCtccacatcccactgggcacgcACTGGTCGATTCAACGTTGTTGTTTCCACATTTCAACGAAGTTATGTCGATCCAACGTGGACCAGATGTTAAATTGACGTCCGTGCCCAGTGGGATTCCTCTCTGTTCACACTAAGGGTTAGCTATTATTCAGTAGCGGAAAGTGAGGGGGAGGGTTGGCAAGTAGGGAGGGGTTAGTCTCGTGAAAATGTGCGTGCGCTGGTGTGTGAGACGAACTGTGCTGGAAGGTGTGGAACAGTTTTATGGCGAGAGAGGTGCCATCAAGAAGGATAAGTGTAAGTGAAGAAAAGGAAGAATATCTCCATCCTGATTGGAGACTGACAAGCTTCAGATGATGTTGCTGAGCCTTCTTTCTGGTTTGATCATGGGAGCGGCTGTCCTCTTTGTTCTTTACCGCTGGGTGATCCCCATGGCTGTGCAGTATCATGGAGGACTGGCACTACTGTGGCATGATGTCATCGTGGAGCGTGCACTGGACACCTTGACCCGGACTTCACGTCCTCAACGTATTCTGAAGGCAGTGCAGACCAAAGCCACTGTAGGAGACCCCCAGAGTGTGATCACAGCCATCGACCACTTCTGCAGACATAGAGAATGGGCCATGAATGTGGGGGATGAGAAAGGCTCCATTCTGGACTCGGTGGTCAATGAAGTGAGTCCAGTCACTGTCTTGGAGTTAGGCACTTACTGTGGCTACTCAACAGTACGCATAGCCCGCCTATTACCCCCTGGAGCCTGTGTCATTACCTTGGAGTTCAACCCAGATTATGCTGCCATTGCTCGTCAAGTCATCAAATGGTCAGGACTGGAAGATAAGGTGCAGCTAGTGGAGGGAGCCTCAGGAGACTGGATCCCTTGGATGAAGGAGCATTTCGGGGTCCAGGCGTTTGACTTAGTTTTCCTGGACCACTGGAAAGAGCGCTACCTTCCTGACACAAAACTGCTGGAGgagtGTGGTCTCATACAGAAAGGCACAGTGCTGCTGGCAGACAATGTAATCTGCCCAGGAACCCCTGACTATCTGGAGTACGTCCGTAACAGCCCTCACTACAACAGCCAGTACTACAGATCCCACCTGGAGTACACCAAAGTAGAGGACGGCTTGGAGAAGTCTGTGTTCTTAGGGTACTAGCCAAACATTGAACCTCTTGTTTTAAAACACTGTAACTCTCTttgtaatgtatttttttgtttgtttcaattTTAAGCACTGCCTTACATGTGAGTTATGACATACTGTAACTTACTGTGGTAAGCATTTCTTTCCCTGTATAATTTATCTAAAGTAAACCGATATGTCTTTGAaaagta
>XM_021609485.2
GACGTTGTGTTAATTTAGCCAATTCATGCATGAATTCATAATACTCTGATTCACCTGACTCCTGTGATGAGATCTCGTGGAATGGCAGAGGAGGAGTTGCTTCAAAGGGGATTAGGATACTGATGAGTAGGGTTCAAAACTGCAGCCCGGTCACCCAGTCCATGCAAGGATGTTGCTGAGCCTTCTTTCTGGTTTGATCATGGGAGCGGCTGTCCTCTTTGTTCTTTACCGCTGGGTGATCCCCATGGCTGTGCAGTATCATGGAGGACTGGCACTACTGTGGCATGATGTCATCGTGGAGCGTGCACTGGACACCTTGACCCGGACTTCACGTCCTCAACGTATTCTGAAGGCAGTGCAGACCAAAGCCACTGTAGGAGACCCCCAGAGTGTGATCACAGCCATCGACCACTTCTGCAGACATAGAGAATGGGCCATGAATGTGGGGGATGAGAAAGGCTCCATTCTGGACTCGGTGGTCAATGAAGTGAGTCCAGTCACTGTCTTGGAGTTAGGCACTTACTGTGGCTACTCAACAGTACGCATAGCCCGCCTATTACCCCCTGGAGCCTGTGTCATTACCTTGGAGTTCAACCCAGATTATGCTGCCATTGCTCGTCAAGTCATCAAATGGTCAGGACTGGAAGATAAGGTGCAGCTAGTGGAGGGAGCCTCAGGAGACTGGATCCCTTGGATGAAGGAGCATTTCGGGGTCCAGGCGTTTGACTTAGTTTTCCTGGACCACTGGAAAGAGCGCTACCTTCCTGACACAAAACTGCTGGAGgagtGTGGTCTCATACAGAAAGGCACAGTGCTGCTGGCAGACAATGTAATCTGCCCAGGAACCCCTGACTATCTGGAGTACGTCCGTAACAGCCCTCACTACAACAGCCAGTACTACAGATCCCACCTGGAGTACACCAAAGTAGAGGACGGCTTGGAGAAGTCTGTGTTCTTAGGGTACTAGCCAAACATTGAACCTCTTGTTTTAAAACACTGTAACTCTCTttgtaatgtatttttttgtttgtttcaattTTAAGCACTGCCTTACATGTGAGTTATGACATACTGTAACTTACTGTGGTAAGCATTTCTTTCCCTGTATAATTTATCTAAAGTAAACCGATATGTCTTTGAaaagta

Function

NR:

description
catechol O-methyltransferase-like isoform X2

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0016206 catechol O-methyltransferase activity molecular_function

KEGG:

id description
K00545 COMT; catechol O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609484.2 False 1549 mRNA 0.49 6 47337235 47345245
XM_021609485.2 True 1146 mRNA 0.48 6 47337235 47345317

Neighbor

gene id symbol gene type direction distance location
LOC110527890 LOC106582870 coding downstream 156 47302690 ~ 47337079 (-)
LOC110527117 LOC106565757 coding downstream 42516 47289490 ~ 47294719 (-)
LOC110527888 LOC106582868 coding downstream 52444 47260325 ~ 47284791 (-)
LOC110528959 LOC106582867 coding downstream 191221 47144905 ~ 47146014 (-)
LOC110527887 LOC106582866 coding downstream 195675 47045318 ~ 47141560 (-)
LOC110527892 LOC106582871 coding upstream 63 47345380 ~ 47357081 (-)
LOC110527894 LOC106582873 coding upstream 14554 47359871 ~ 47389443 (-)
LOC110527895 LOC106582874 coding upstream 44289 47389606 ~ 47403739 (-)
LOC110527896 LOC106582875 coding upstream 59594 47404911 ~ 47416151 (-)
LOC110527898 LOC106582876 coding upstream 87685 47433002 ~ 47447036 (-)
G615256 NA non-coding downstream 106081 47230948 ~ 47231154 (-)
G615254 NA non-coding downstream 107768 47229181 ~ 47229467 (-)
G615251 NA non-coding downstream 110508 47225799 ~ 47226727 (-)
G615186 NA non-coding downstream 121791 47215166 ~ 47215444 (-)
G615178 NA non-coding downstream 125757 47210856 ~ 47211478 (-)
G616058 NA non-coding upstream 80535 47425852 ~ 47496066 (-)
G616112 NA non-coding upstream 195592 47540909 ~ 47541186 (-)
G616162 NA non-coding upstream 302226 47647543 ~ 47749086 (-)
G616328 NA non-coding upstream 663479 48008796 ~ 48009224 (-)
G616358 NA non-coding upstream 701599 48046916 ~ 48047153 (-)
G613411 LOC106582852 other downstream 1461535 45874965 ~ 45875700 (-)
G611674 NA other downstream 2851483 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 3757271 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 3800270 43526691 ~ 43537037 (-)
G616880 NA other upstream 1141730 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 1839107 49184424 ~ 49186096 (-)
G617632 NA other upstream 1850287 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 1949938 49295040 ~ 49297305 (-)
LOC110527961 LOC106565835 other upstream 2314718 49660022 ~ 49936575 (-)

Expression


Co-expression Network