LOC110527892 (LOC106582871)


Basic Information

Item Value
gene id LOC110527892
gene name LOC106582871
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47345380 ~ 47357081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983372.1
AGCTCACGTCATTTTCAGAACATATGCTGTGCTTAtgggcaagcaggcaggcaggcacgcagagCAAACATTGACGAGGGAAGAACGGTCCCTCAGCTGCCAAAGAAATCGGAGGACACCGTTTTTCACTATTATATGCCTTCTGCGTGTACCATCTTCATCTCCATTTTCTTCAACCCCACACTTGCATGACCTGTGCTGTCTAGGCTTAGAAGGCGTCGGCTCCCTGTTCTATTGTGTGTCCCTTGTCACAATGTCCAATGTGCCTTCATCTAGATATGCTGCTGCAATATCAGCCCTTTCCCTCAGTTTACCTGCTGTTAACCCCAACCCACCGCTTACCCCCAAATCATCCCTTACCCCCAAATCCCTGACCCCTAAACCACTAGTTGACCCTACCCCCAAACCACCCCTTACCATCAAACTATCATCATATCCCCCTTCACCTGAGATTTTTGGATCAGATGATGAGGAACAGGAGAATCCATCTGATTACTGTATAGGTGGATACTACCCAGTGGAAATTGGAGCAATATTCATTGACCGTTACCAGGTGGTGAAGAAGTTGGGATGGGGCCACTTCTCCACTGTGTGGCTAGGCTGGGACATTGAGAAGAGGCGTTTTGTGGCTCTGAAGGTGGTAAAGAGTGCTCCAACCTTCACAGAGACTGGTTTGGATGAGATCGAGCTTCTGAAATGTGTAAGGGACAGTGACCCATCTGACCCTAAACGAGACACTGTTGTGCAACTTATCGATGACTTCAAGGTCTCTGGAGTCAATGGGGAGCATGTATGCATGGTTCTTGAAGTGCTGGGTCACCAACTGCTGAAGTGGATCATCAAATCCAACTACACTGGCCTTCCCCTGCCCTGCGTTAAGAGCATCCTCAGACAGGTTCTCCAGGGCTTAGATTACTTGCACACTAAATGCAAGATTATCCACACAGACATCAAGCCAGAGAACATCCTTTTGAGAGTGGATGATGTTTACGTCCAGGAGCTGGCAGCCGACACCAACCTACAGGAGCTGCCAGTTTCTCCTGCTCCCACAAGCTGTTCAGAAAATACCAGTCTAAGAGAGAAGCAGATTGTGTCAAACTTGTTGGGGAAGTTGACTGTGGCTTTCCAGACTCTTGGGGTTTGGACCGGGAAGGTTTCCAGGATCCCGAGGGCCAGGTTGTCGAGAAAGGGGAACAAACATCAACAGCCGCAGCAGGACGAGGACACTTTAGTTGACCGTCAGAAGAGGGCAAAAGCTCATGTGTCATTCTCCAATATCACCACTCCCTGTAGCACTCCCagttccacctctccccctaagCCTTCAGGTCCTGTGCGTACTACATGGAGACGGAACCTGCTGCATGAAGAAGCAATGGGCTCTGACAGCAAGGAGTCAGTCTCGTCACCGATGGAAGATGCACCATCATTGACTACAATGTCTCACTGCTCTAGACAATCTACAGTGCTGCATCCTTCTACCCAGAGAGACAACCAGCCCTCATCACCATCACATGGGTTCAGTGAAACAGATATGTTGGTGAATCTTCTGAAGCCACAGAATGCTGATGAAATCAGCATCAAGATTGCAGATCTGGGCAACGCCTGCTGGGTGTACAAACACTTCACAGAGGACATCCAGACCTGTCAGTACCGTTCTGTGGAGGTCCTGATTGGGGCTGGCTATGGCACTCCTGCAGACATCTGGAGCACAGCCTGCATGGCATTTGAGCTGGCCACTGGGGAATATCTGTTTGAACCCCATTCAGGGGACAACTTCTCTCGAGAGGAAGATCACATTGCTCACATAATTGAGTTGCTGGGACCCCTTCCATCCCAGTTTGCCCTCTCAGGGAGAAACTCCAGGCGATATTTCAATCACAAAGGGCATCTGAGGCGCATCTCAAGGCTGAAGCCGTGGAGTTTGTGTGAGATCCTGCTGGATAAATACGAGTGGCCACGGGATCAGGCAGTCCAGTTCAGTGCCTTCCTCCTCACCATGCTGGAGCCCCTCCCAGAGAAGAGAGCCACCGCTGCCCAGTGTTTAAAACATCCCTGGATCTCCTCATAGACATCATACTGTTACCTAGTGTCTGAACCCCTCTGGATCCCCTCATGGACACAGAGTCGCCACCACTGCCCAGTGTCTGAACCACCCCGGATTACATCGTAGACACAGCCGTCTCACCGAGGCTACAGAGGTTACAGAGGTGAAGTCCCATAATATGATGATGATTTCAAGGGCAATTCCACCCATTTTAAACCTCATGTCATTATCTCAagcacaataccagtgtctaAATATGAAATTAGCATATTTCTACTTTTTGTAgaacaaaatataaataaaaaaagttaaacgcgatgacatcatcaaaagttgaaacatttttaaaaaatgtgattttctaaCACTGAGATACGCGGCAACGTGGGGAGCAAGAAAATACCCTCCCTCTGACTAGAAACTTTTTGCAGGTTTAGAAAATCAGTTTCTCTTACttttaatcctaccctgtgatgtcacagagaagtCTTTTTTAGGACCTTATCtgtttaaccacagatcatagaaacgtGCTGTTTTCACATACCgtatgtagacactggtttggtgctggtGATAattatgaggttgaaaagtggcagAATTGCCATTAAAGTGGGGGAAGGGGTTTTGTGGGTCACGTATGAAATTCAGCAAGTGTTATTTTTTTCAGCTGATTTTCTGCATGTGCTATTTTTCTGTTTGCTCTGCCAGAGCAATCAATTATCACTATATTTTGTCGGGTGATTTGAAGCGTTTGATGTGGAGAAAATAACTTTTGATATGGAGAGGTGACATGAGAAACAATGTAAAACTGTCACTGTTTAATTTTACAGCTCTCTTTAGATATTAATTTGATATTCCAGATTATTTCTGATGTGATGGCCTGTGTTCAGATTATTCAAATTGGAGCACATCAATGACCAAAATCATAAAGAAGGCAAGACTTACTGGAATACTGCCTTTTCAAAAGGACACTGGGAACATTACTTTTGTTGTTGTCTTTCATTGAATAAATGCTATTTGTTTA

Function

NR:

description
SRSF protein kinase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983372.1 True 3077 mRNA 0.46 15 47345380 47357081

Neighbor

gene id symbol gene type direction distance location
LOC110527893 LOC106582872 coding downstream 63 47337235 ~ 47345317 (-)
LOC110527890 LOC106582870 coding downstream 8301 47302690 ~ 47337079 (-)
LOC110527117 LOC106565757 coding downstream 50661 47289490 ~ 47294719 (-)
LOC110527888 LOC106582868 coding downstream 60589 47260325 ~ 47284791 (-)
LOC110528959 LOC106582867 coding downstream 199366 47144905 ~ 47146014 (-)
LOC110527894 LOC106582873 coding upstream 2790 47359871 ~ 47389443 (-)
LOC110527895 LOC106582874 coding upstream 32525 47389606 ~ 47403739 (-)
LOC110527896 LOC106582875 coding upstream 47830 47404911 ~ 47416151 (-)
LOC110527898 LOC106582876 coding upstream 75921 47433002 ~ 47447036 (-)
LOC110527118 LOC105017368 coding upstream 107309 47464390 ~ 47465688 (-)
G615256 NA non-coding downstream 114226 47230948 ~ 47231154 (-)
G615254 NA non-coding downstream 115913 47229181 ~ 47229467 (-)
G615251 NA non-coding downstream 118653 47225799 ~ 47226727 (-)
G615186 NA non-coding downstream 129936 47215166 ~ 47215444 (-)
G615178 NA non-coding downstream 133902 47210856 ~ 47211478 (-)
G616058 NA non-coding upstream 68771 47425852 ~ 47496066 (-)
G616112 NA non-coding upstream 183828 47540909 ~ 47541186 (-)
G616162 NA non-coding upstream 290462 47647543 ~ 47749086 (-)
G616328 NA non-coding upstream 651715 48008796 ~ 48009224 (-)
G616358 NA non-coding upstream 689835 48046916 ~ 48047153 (-)
G613411 LOC106582852 other downstream 1469680 45874965 ~ 45875700 (-)
G611674 NA other downstream 2859628 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 3765416 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 3808415 43526691 ~ 43537037 (-)
G616880 NA other upstream 1129966 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 1827343 49184424 ~ 49186096 (-)
G617632 NA other upstream 1838523 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 1938174 49295040 ~ 49297305 (-)
LOC110527961 LOC106565835 other upstream 2302954 49660022 ~ 49936575 (-)

Expression


Co-expression Network