LOC110527900 (LOC106582882)


Basic Information

Item Value
gene id LOC110527900
gene name LOC106582882
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47529385 ~ 47535288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609501.2
CCAGCTGTACACAGTCAGGACCACCTCATCCTCTCGCTCTCATCTTCAATGTTTCTCCCTTTCGTTGAGTGAGCCATAAGGCTGAAAATGATCTCTACGACTTTGGATTTAATGCTTCATTCATCAATCAACACTGTATATTTCCTCAGTATTGTTCAAATTTGAATATTGTGTATTTGAATGCTCTCTTTCACCACCATTATAGGAACAGGGACTATACAGCAGTTGTTCAGACATAGATCCAGACACTGGAACCTCAGGGTGGTGtgttctctcaatctctcacctAGCTGGGTATCCTGTACTGCGGCCATCCTCTGCTCTCCTTTGACATCCACTCTTCACAAGGACCTCAGAGTTAGTGGTTATCTCTGTAAGAATGGAGGATTCCTCTGAACAGTCTCACTGGGTGTCTCCGGCTCTGCTCAGCTCTGATCCCCTGGCCAGCTTCTCCTCAGAGCCTGGCTTACTACctccaggagaggagggagagtccTTCTTCTCCAACCCTGAGACTGACTACACCAGCCTTCCCTCCTACTTCTCCAACCCCAGCCACAGCAGGGCTCCATCAGGCTACAGACAGAGCTCAGTTCGCCAGGTGTACTCCTCGCCCTCTCTCCTGAGCAACCTTCAATGGCTGGATGGCCCTGGCAGCCACTCACTGAGCTCTCCATACAACCCATCATCCTCTACCTGGACCAGCAATCCTTTCACTAAGACTCCTCTGCACCCATACACCCCAACCTCCCTTTATGCCTCCAGCGCCACGTCCTCGTTCACCTCCAGAGATGGGTACTCCTCTCCAGGTAGGGATGGTAAGGAGAGTCCCAGGCTTCAGGAGGCCCTGAAGGCCGAGCGCTTGAGTCCTTTGGGTGGAGGTGGTGGAAGCAGTTTTATGAATCTGACTTCTGCTGCTGGGAGTGTGTGCACACCATCTCCCCACTCCCATTCACACATGCTGGGCCCCTACAGCTCGTACATGACCTCTCCACAGGACTACACAATGGCAGGCCTATACTCCTCCCCAGGGGCATGGATGAGCCCCTCCTCCTACTCCCCCAAACTACGTAATAAGATGAGGCTGTCTCCACCAGAGGCCAGAGAGTGTGTCAACTGTGGAGCCACTGCCACCCCTCTATGGCGTCGAGATGGAACAGGACACTACCTGTGTAACGCCTGTGGGCTTTACCATAAGATGAATGGCCAAAATCGTCCCCTGATCCGACCAAAGAAAAGACTGattgTCAGCAAGCGGGCCGGGACTCAATGTGCCAACTGTCACACCAGCACCACCACGCTGTGGAGACGGAACGCCAGGGGTGAGCCTGTGTGCAACGCCTGTGGACTCTACTTCAAGCTGCACAACGTCAACAGACCCCTTACTATGAAGAAAGATGGTATCCAAACACGAAACCGTAAAGCGTCCAACAAGAACAAGAAGGGCAAGAAGAGCGCCATGTTGGAGCAGTACCCTGACCTTTCACAGGGTCCCCCCCTCGATGACCACGGAGGCCCCTACTCGCTGGGTCCAGGGTCACAGCTCTCCTACAGCCACACCCCTCACTTCCTCTCCCCACCCTCCGGCCTGCACCCGTCTGTCAGCCTGTCTTACACCCATCACCCAAACACTGGCATGGTGCCCACACTGGTGTGAAACAGACCTAGACACATTCAGACCCATAAAGGcaacatacagcacatacagtacagacacaaACTCGCCTACTGAGGAATAGCTTCTTTGTAGCAATGGATGCCTTGTACATAAATGCATTTATACTTTTTTCCTTCCTATTTTATGTGTGAAGTTGATCTTGTCTTAACACTGGACATAATACTGCACATTTTTACAAGATCAAAAAATAAAAACTTTTATGGAAGGATTTGATTGTATTTTGTTAAAGGCATATTCTATTTTTATGAAAACTAAAACTTTAAAGGTAAAGTTTAAACTTCCCACTGTAATCATTGATACGGGTAACACTGGTATGAACTTGTAGCTATCTGTATTTCGTAAATACGTACCGAATTGTGTGGACTAAAGTTGCCATATATCCCTTTTCAAATGTTTATGATTTTAGTTGAAGGTGAAAGGGCATTAAAATGTGAATTGTTTTGTATTTGCTACATTTCTATATTTGTAATTTCTTACAAGCTCCTcataaacaataaaacatgaatggtaaaat

Function

NR:

description
PREDICTED: erythroid transcription factor-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17894 GATA2; GATA-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609501.2 True 2192 mRNA 0.48 7 47529385 47535288

Neighbor

gene id symbol gene type direction distance location
LOC110527899 LOC106582878 coding upstream 4807 47511000 ~ 47524578 (+)
LOC110527889 LOC100380687 coding upstream 227290 47296738 ~ 47302095 (+)
sema3fb LOC106582865 coding upstream 499836 46936288 ~ 47029549 (+)
bhlhe40 LOC106582864 coding upstream 718923 46806447 ~ 46810462 (+)
itpr1b LOC106582863 coding upstream 728614 46660325 ~ 46800771 (+)
LOC110527907 LOC106582887 coding downstream 28776 47564064 ~ 47566159 (+)
si:ch211-232b12.5 LOC106582889 coding downstream 86183 47621471 ~ 47639848 (+)
LOC110527910 LOC106582895 coding downstream 176242 47711530 ~ 47715289 (+)
LOC110527911 NA coding downstream 219979 47755267 ~ 47774218 (+)
LOC118965382 NA coding downstream 486201 48021489 ~ 48022175 (+)
G615346 LOC106582876 non-coding upstream 44967 47433043 ~ 47484418 (+)
G615345 NA non-coding upstream 46714 47478808 ~ 47482671 (+)
G615353 NA non-coding upstream 112385 47357958 ~ 47417000 (+)
G615439 NA non-coding downstream 2575 47537863 ~ 47538205 (+)
G615444 NA non-coding downstream 6944 47542232 ~ 47542487 (+)
G615340 NA non-coding downstream 9312 47544600 ~ 47544904 (+)
G615453 NA non-coding downstream 38850 47574138 ~ 47577040 (+)
G615338 NA non-coding downstream 105953 47641241 ~ 47642526 (+)
LOC110528958 NA other upstream 891431 46629591 ~ 46638492 (+)
G613664 NA other upstream 1250052 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 3501157 44002556 ~ 44035143 (+)
G610622 NA other upstream 3697505 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 3944489 43584020 ~ 43584896 (+)
G615624 NA other downstream 304100 47839388 ~ 47839722 (+)
G617133 NA other downstream 1291539 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 2037032 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 2768142 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 3425206 50960494 ~ 51079129 (+)

Expression


Co-expression Network