LOC110527909 (LOC106582893)


Basic Information

Item Value
gene id LOC110527909
gene name LOC106582893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47686832 ~ 47696673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609513.2
TCTGAAGTGTCActttcagagaggagaggacagtatgaATTGGGCGTGTTCGGTCACAGTGCTACAGTATACCAGTTAGGCTATCTACGTTGGAATACTTTCTTATTCTGAGCTACAGTCGCCGAGGATTCAGTTGTACCTTCCAGTCATCTGTAGTACTTTGGAGTAACTGCTCTTCAGATACTTGTTTAAACGGGTGCCTGCTAGTCACACAACAAGGATCATTGTTCACTTTAGAAGATGAATGGAATTTAAAGGAGATGGGAAGGAAAAGTTCTTCATAGTGACACGGGGGAAGGTGAGAAAAGGCTTCTCCAGAGGATGTATCGGCCGTGTGGAAGCAGTGATGCATAAGGGAGAGCTGATGGGACTGTTGTACGGAGGTGGCAGCAGTGGGAATCCTAAGAGCGGGGACATGGTGAAGAGGGAGGACACGTACCCCCTCACCCGACACCAGGCCCAGCTGCTGCTCTTCGTGTCCCCCTCCAGCAAACGCCTGGAGCTCCTGTGTAACCCCCAGCTCTTTTCAGCCATCTGTGTACTGTCTCAGGATGACTTGGTAGTGGTTAAGCACAAGAAAGGTCACCAGCCAGGCCTGGTTCGGAACCTGATGCTGATCGGTAAGAAGGAGAACCAAGGGGACCTGCTGATGCTGGGCTTTGAGGTTGAGTTTGTGCAGGACTCTGATCAAACAGTGTCCCCTAAGAAGCCAGCTCCTCTCCCCCTGTTCAGTGCAGCAGACATTGTCCAGGTTGTCCCAGCATACTCTGTAGGCATTGGCCCTCGCTGGAAAGACAGTTATTCAGAGGGTCTAAACAGAAAGGCGGTGTCACCTATCAACTCCATGCCTAATATGGGATCTCGTGGACAACAAGTGAGAGATATAAACCATTTAGACCAGAATGTCACCCAAACCCCAACCCAAAGCCCGTCACACCACCCTTTTGAGGTGGGATCCATGGTGGAGGTAACATCCAACACTGGGATAACTGTATACGGGGTGATCCGTTGGATGGGCGTCCTTTCAGAAAATAAAAACGACTGGGCCGGAATTGAGCTGGATTATGAGGTGAATAATTGCTCAGATGGGACGTATGGAGGCCAGCAGTATTTCACTTGTAAAGGGGGCAGGGCCTTGTTTGTGCCCCTCACAAAGTGCAGTCCAGATGGAAGGTTCTTATGTCCCCCCACTGAAAAGGAGACCCTCAAAGCAACAGATATCCCCCCAGTCGTTCCATTGGAGGAAACAGATGAGAACGTCCCTCCTATACCTGAGTCGGAAGCCCTGTCTTTGCTTGTGGGCAAGATGAAGGGGATCCAGGGGCACTATAACTCCTGCTACCTCGACGCCACTCTCTTCAGTCTGTTCTGCTCATCTATGACCCTGGACAGTGTTTGccacaaaccagatggcacagaAAAGAGCATATCTTGCTCTCTGAAGAAAGACATTGTCAACCGTTTGCGCAGACAAGGTTTTGTGCCTGCTGAGAGCGTAATGAACTTCCGCAAGCAGCTCGGGTGTGACACCTTTGTAACAGAAGAGAAAGACCCTGAAGAGTTCATCACAATCCTTCTACAGCGGGTGCTTTGCATGAAGTCATTGCTTAAACTCAGGTCGAATAACGACACATCTCAGGATGCCTACACATTCCAGATTATTCTGGATAAGGAGCAGGTGACACAGACTCCCACTGTCCAGCAACTCCTGGATATCTCCTTGCTGTCTTGTGGCCTCAAGTTTGAGGAGATCCCATCCTGCCTCATGGTCCACATGCCAAGGTTTGGGAAGAAGTACAAGATGTTCCCCTACATTATCCCCTCAACAGAATTTGACATCACAGATCTTCTATACAACTCCCCCCGAGAATGCTTCCTCTGTGGGCGTTTGGCAGAGTACGAGTGCCCCCAGTGCCTACAAGACCGCAAGCTCCAGCCAGGAAGAATCAAACAGTATTGCACTACCTGCAAGACAAAGGTGCACATTCATCCCTCTCGGCAGAGCCACTGCCCTAAAGCCCTGGCAGTGCCAGCGGAGGTGCCAGCAGATGCCCCTGTACCCAGGCACAAAATGCAGTTGTTCGCTGTGCTCTGTATCCACACCAGCCACTATGTGTCCTTTGTAAAGTATGGCCCTGGCCCTCGCTCCTGGCTCTTCTTCGACAGCATGGCAGACAGATGTGGTGATGACCAGAGTGGCTACAACATTCCAGAGATCAGGGCTTGTCCTGAGGTGGGTGACTTCCTGTCTCAGTCAGAGGAGGAGCTAGCGCGGGCTGACCCCTCCCAGGCTGGAGAGCCTGTCCGCAGGCTGCTGAGTGACTCCTACATGTGTTTGTATCAGAGTGCCTCCATGGCACTCTACAGATAAAGTCAGCACAAGGCTGAGGTGTACTGGGGAGAACACAGCATTCTCACAACAATGCTACAATAACCCTGGTTTCAGAGTCGCCGTGGCGTCAATTCATTTTCACAGAAATAAAACTGATGATTAGCTGAAGACCTTGAACTTTATAGGCTTTCATGAGAACAGAGATATTCACCAAGGTCTTCTCAAATATTTTTCTTTGTTCAATAAAGATTGATTGATGAGGTTGGGGTTAGGAAGGGCAAGTGAACTATattattttttcccccctcattgcCTACACCAACCATTTCCCACTCACTGCTTGTATTTTGGCAATGTTTTATTGCTGCCAATgttatgtaaacatacagtatcgtatactctagatcagtggttcccaaactttttatattccataccccttcaaacattcaacctctagCTGTGta
>XM_021609515.2
TCTGAAGTGTCActttcagagaggagaggacagtatgaATTGGGCGTGTTCGGTCACAGTGCTACAGTATACCAGTTAGGCTATCTACGTTGGAATACTTTCTTATTCTGAGCTACAGTCGCCGAGGATTCAGTTGTACCTTCCAGTCATCTGTAGTACTTTGGAGTAACTGCTCTTCAGATACTTGTTTAAACGGGTGCCTGCTAGTCACACAACAAGGATCATTGTTCACTTTAGAAGATGAATGGAATTTAAAGGAGATGGGAAGGAAAAGTTCTTCATAGTGACACGGGGGAAGGTGAGAAAAGGCTTCTCCAGAGGATGTATCGGCCGTGTGGAAGCAGTGATGCATAAGGGAGAGCTGATGGGACTGTTGTACGGAGGTGGCAGCAGTGGGAATCCTAAGAGCGGGGACATGGTGAAGAGGGAGGACACGTACCCCCTCACCCGACACCAGGCCCAGCTGCTGCTCTTCGTGTCCCCCTCCAGCAAACGCCTGGAGCTCCTGTGTAACCCCCAGCTCTTTTCAGCCATCTGTGTACTGTCTCAGGATGACTTGGTAGTGGTTAAGCACAAGAAAGGTCACCAGCCAGGCCTGGTTCGGAACCTGATGCTGATCGGTAAGAAGGAGAACCAAGGGGACCTGCTGATGCTGGGCTTTGAGGTTGAGTTTGTGCAGGACTCTGATCAAACAGTGTCCCCTAAGAAGCCAGCTCCTCTCCCCCTGTTCAGTGCAGCAGACATTGTCCAGGTTGTCCCAGCATACTCTGTAGGCATTGGCCCTCGCTGGAAAGACAGTTATTCAGAGGGTCTAAACAGAAAGGCGGTGTCACCTATCAACTCCATGCCTAATATGGGATCTCGTGGACAACAAGTGAGAGATATAAACCATTTAGACCAGAATGTCACCCAAACCCCAACCCAAAGCCCGTCACACCACCCTTTTGAGGTGGGATCCATGGTGGAGGTAACATCCAACACTGGGATAACTGTATACGGGGTGATCCGTTGGATGGGCGTCCTTTCAGAAAATAAAAACGACTGGGCCGGAATTGAGCTGGATTATGAGGTGAATAATTGCTCAGATGGGACGTATGGAGGCCAGCAGTATTTCACTTGTAAAGGGGGCAGGGCCTTGTTTGTGCCCCTCACAAAGTGCAGTCCAGATGGAAGGTTCTTATGTCCCCCCACTGAAAAGGAGACCCTCAAAGCAACAGATATCCCCCCAGTCGTTCCATTGGAGGAAACAGATGAGAACGTCCCTCCTATACCTGAGTCGGAAGCCCTGTCTTTGCTTGTGGGCAAGATGAAGGGGATCCAGGGGCACTATAACTCCTGCTACCTCGACGCCACTCTCTTCAGTCTGTTCTGCTCATCTATGACCCTGGACAGTGTTTGccacaaaccagatggcacagaAAAGAGCATATCTTGCTCTCTGAAGAAAGACATTGTCAACCGTTTGCGCAGACAAGGTTTTGTGCCTGCTGAGAGCGTAATGAACTTCCGCAAGCAGCTCGGGTGTGACACCTTTGTAACAGAAGAGAAAGACCCTGAAGAGTTCATCACAATCCTTCTACAGCGGGTGCTTTGCATGAAGTCATTGCTTAAACTCAGGTCGAATAACGACACATCTCAGGATGCCTACACATTCCAGATTATTCTGGATAAGGAGCAGGTGACACAGACTCCCACTGTCCAGCAACTCCTGGATATCTCCTTGCTGTCTTGTGGCCTCAAGTTTGAGGAGATCCCATCCTGCCTCATGGTCCACATGCCAAGGTTTGGGAAGAAGTACAAGATGTTCCCCTACATTATCCCCTCAACAGAATTTGACATCACAGATCTTCTATACAACTCCCCCCGAGAATGCTTCCTCTGTGGGCGTTTGGCAGAGTACGAGTGCCCCCAGTGCCTACAAGACCGCAAGCTCCAGCCAGGAAGAATCAAACAGTATTGCACTACCTGCAAGACAAAGGTGCACATTCATCCCTCTCGGCAGAGCCACTGCCCTAAAGCCCTGGCAGTGCCAGCGGAGGTGCCAGCAGATGCCCCTGTACCCAGGCACAAAATGCAGTTGTTCGCTGTGCTCTGTATCCACACCAGCCACTATGTGTCCTTTGTAAAGTATGGCCCTGGCCCTCGCTCCTGGCTCTTCTTCGACAGCATGGCAGACAGATGTGATCCCTAATCTTCAGTCCCCTCAGGTGATGACCAGAGTGGCTACAACATTCCAGAGATCAGGGCTTGTCCTGAGGTGGGTGACTTCCTGTCTCAGTCAGAGGAGGAGCTAGCGCGGGCTGACCCCTCCCAGGCTGGAGAGC

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609513.2 False 2799 mRNA 0.49 14 47686832 47696673
XM_021609515.2 True 2324 mRNA 0.51 14 47687331 47696673

Neighbor

gene id symbol gene type direction distance location
LOC110527908 LOC106582890 coding downstream 24843 47641229 ~ 47661989 (-)
LOC110527904 LOC106582888 coding downstream 74218 47606510 ~ 47612614 (-)
si:dkeyp-97e7.9 LOC106582886 coding downstream 122877 47559568 ~ 47563955 (-)
LOC110527902 LOC106582884 coding downstream 131014 47548957 ~ 47555818 (-)
LOC110527901 LOC106582883 coding downstream 138224 47544593 ~ 47548608 (-)
trpc4apa LOC106582896 coding upstream 78112 47774785 ~ 47788931 (-)
LOC110527913 LOC106582897 coding upstream 93591 47790264 ~ 47794020 (-)
LOC110527914 LOC106582898 coding upstream 98404 47795077 ~ 47862506 (-)
LOC110527915 LOC106582901 coding upstream 167324 47863997 ~ 47881064 (-)
LOC110527917 LOC106582900 coding upstream 184900 47881573 ~ 47936656 (-)
G616112 NA non-coding downstream 145646 47540909 ~ 47541186 (-)
G616058 NA non-coding downstream 190766 47425852 ~ 47496066 (-)
G615256 NA non-coding downstream 455678 47230948 ~ 47231154 (-)
G615254 NA non-coding downstream 457365 47229181 ~ 47229467 (-)
G615251 NA non-coding downstream 460105 47225799 ~ 47226727 (-)
G616328 NA non-coding upstream 312123 48008796 ~ 48009224 (-)
G616358 NA non-coding upstream 350243 48046916 ~ 48047153 (-)
G616364 NA non-coding upstream 356264 48052937 ~ 48053207 (-)
G616370 NA non-coding upstream 361754 48058427 ~ 48058632 (-)
G616402 NA non-coding upstream 434428 48131101 ~ 48131464 (-)
LOC110527888 LOC106582868 other downstream 416761 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 1811132 45874965 ~ 45875700 (-)
G611674 NA other downstream 3201080 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 4106868 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 4149867 43526691 ~ 43537037 (-)
G616880 NA other upstream 790374 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 1487751 49184424 ~ 49186096 (-)
G617632 NA other upstream 1498931 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 1598582 49295040 ~ 49297305 (-)
LOC110527961 LOC106565835 other upstream 1963362 49660022 ~ 49936575 (-)

Expression


Co-expression Network