LOC110527910 (LOC106582895)


Basic Information

Item Value
gene id LOC110527910
gene name LOC106582895
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47711530 ~ 47715289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609516.2
AGCCAATACTATTGCGTGATGTGTGTTATCTGCAGGTCAATGCGATCAAGGCCGGGTGAACGCTTTGGGGGACATGTTTTTGTTTAGGAATGGGTAAGCGAGTGGTCTCATCCTGCGCTCATGCGGAGGTGGGGTGTGCCCTCAGGGCGTCATAGTATTTCAGCAGAGGACAGAGCAGCATTTTGGAGACAGTCCGTTATTTAGACAGTCACACAGTGGTCCACAGTTGAGCAGGTTGAGACAAACGGGTAGACTATAAGTTTCAACGATATATTATTCTTTATATACCGCTTTTCTCATGTGGGTCTAAGTCGTAGACGTCTGTCTATTTCCAAAGTTTGAACCCGTGACTGGTGGATATTTTACGAACATATTTCGCAAAGTGGAAAAATGCCTCGGTCTTTCTTGGTCAAAAAGTATTTCGCGAATAAAAAACCCAACTATAGTGAACTGGAGTGTCAAAATGCCACCTCACTGGAGAGGTACCCACTAGCTGAGCTTCCAGCAGGGGACAATAACTTAGCTGCCACCTGTTACACAACAGGACTGGTATGGGACGTGAGCTTCCTTCCAGCCCTCTACGTCCCCACATCCCCCACTGATGCCCCTCCCACCCCCGGTCCCCTGGACCTCAGCTCCCCATCCAGTCTCAGCAGCAGTGCCAGTAGCagtggggaggaggatgaggggcgCACCTCTGACCCACCCAGCCCCGAGCCCACAGACACCTACCACCCCCCCCAGCGCCCCAAACGCACAGGCATCAAGAGCCATGGGGCCCTGGCCGAGGACGAGAGAGTGGCCCCAGTCACTGCAGCAAGGCCAGCCTTCTTCTGCAAGCACTGCCCTAAAGAGTACACCAGCCTGGGGGCGCTGAAGATGCATATCCGCTCGCACACACTACCCTGTGTCTGCCCCACCTGCGGGAAAGCCTTCTCCAGGCCCTGGCTGCTGCGCGGCCACATtcgcacacacacagGTGAGCGGCCGTTCTCCTGCCAACACTGTAACCGTGCCTTCGCCGACCGCTCCAACCTGCGGGCGCACCTGCAGACCCACGCTGAGGTGAAGAAGTACCAGTGTGGTGTGTGTTCCCGTACCTTCAGCCGCATGTCCCTCCTCCAGAAACACAGCGCTGTCAGCTGCTCCACCTCTTCCACAGCATGAGCAGGATTGGGCCATGGAGTTTTCCCCACAGAGACCTCAGGGCGGTAGGGGAGTCTACAGACTCATATCACCAGCAAGACCAGAGGAGCCTGAACCAATCTGCCAACAGAGACCATGAACTCACCGTTAACTGGTAGGAGAGGAAGTTGACCCTGACTCGTATCTCTTTGGATGGAACTTCCACAGCCATCTCAGTTTCAATCTCATTTAAAGAAGAATAAGAACATTTTTCAAACTCCTCCCATTTCAAGTCTGGTAGATGTATTGGACTGTAAGTAACTCTGTACTCCTGCCATTCTCCCAGTCCCAACTTAGTTTTTTCCTCATATACAGTAGTGGATTCATGAGGGTTAGTGGTGCCATTGTTTTTGTCTATGGCCAGACAAGTTCAGGATCATCGTGGCCTAGACACAGCTGCTGAGAGAGGTAGGGGTGCGTATGTGAGATACATCTCtcagcatgacacacacacacacacacacacacagctgtccctGGTAGAGTGGTGTAGATAGACAAGGTGCTAACAGGTGCTCTGGCCCTGACCTTCACTGGGCTGATAACAGGTGACTTCCACCTCCCCCAGAAAGAGGAAGTATGTCATCATCACAAAGAGGATGGGGTCCGTTGGTCCCTTTGTATGCATGTCTCTAGTGGGTGCGTCTTAAGCTTTTACTTTGACTACATCAAGCCCAGATGTATTCTGATGTGTTTCAAAGACAGGATAAAGCCATTTGTTTCTGTTGTTATTCCTTATGGAAGCTCTCAGCTTTCAATGTCGTTTTAATTCCTGAATGATAATCTAAGCCATGCACTCCAGGTTACCACAGTGTTAATTATTGCCGTTGTTCTCTACAAtgatagagagaacagtctttccCATGCCATTTTTGTAAGATATAAACTTGTTTTGTGAAATTTATTCTTTCTAAACCAAAGATGTGCCTTCTTGCCTCAGCTGGTAGTTTTACCATTATGCATCAAACAGTCAGAACTGTGGGGAAGGAGGGGACCAAATGCCTTGTCTAAAATGTTTACGTCATAGAGGCACGGTTTCACAGCCCTGGCTGTAAAGAGGTGAATTTTACATTTCCTAAACCTTTTATGGTTTGCAGTGCGGTGTCCAGATTGTATGTAGTCTTATTTTttactgtgtttgtgtttttcactTCAATTTCAATTATTTCATAGCTGATGGATTTGCATTCAATAAAATAATTTATGTTTCTAAAAA

Function

NR:

description
protein snail homolog Sna-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609516.2 True 2401 mRNA 0.49 3 47711530 47715289

Neighbor

gene id symbol gene type direction distance location
si:ch211-232b12.5 LOC106582889 coding upstream 71682 47621471 ~ 47639848 (+)
LOC110527907 LOC106582887 coding upstream 145371 47564064 ~ 47566159 (+)
LOC110527900 LOC106582882 coding upstream 176242 47529385 ~ 47535288 (+)
LOC110527899 LOC106582878 coding upstream 186952 47511000 ~ 47524578 (+)
LOC110527889 LOC100380687 coding upstream 409435 47296738 ~ 47302095 (+)
LOC110527911 NA coding downstream 39978 47755267 ~ 47774218 (+)
LOC118965382 NA coding downstream 306200 48021489 ~ 48022175 (+)
LOC110527919 LOC106565791 coding downstream 351634 48066923 ~ 48068196 (+)
LOC110527921 LOC106582906 coding downstream 412671 48127960 ~ 48168204 (+)
LOC110510677 LOC100136421 coding downstream 481494 48196782 ~ 48214546 (+)
G615338 NA non-coding upstream 69004 47641241 ~ 47642526 (+)
G615453 NA non-coding upstream 134490 47574138 ~ 47577040 (+)
G615340 NA non-coding upstream 166626 47544600 ~ 47544904 (+)
G615444 NA non-coding upstream 169043 47542232 ~ 47542487 (+)
G615439 NA non-coding upstream 173325 47537863 ~ 47538205 (+)
G615580 NA non-coding downstream 48026 47763315 ~ 47764018 (+)
G615652 NA non-coding downstream 166333 47881622 ~ 47883457 (+)
G615748 NA non-coding downstream 294581 48009870 ~ 48010082 (+)
G615770 NA non-coding downstream 330339 48045628 ~ 48045973 (+)
G615771 NA non-coding downstream 330752 48046041 ~ 48046339 (+)
LOC110528958 NA other upstream 1073576 46629591 ~ 46638492 (+)
G613664 NA other upstream 1432197 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 3683302 44002556 ~ 44035143 (+)
G610622 NA other upstream 3879650 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 4126634 43584020 ~ 43584896 (+)
G615624 NA other downstream 124099 47839388 ~ 47839722 (+)
G617133 NA other downstream 1111538 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 1857031 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 2588141 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 3245205 50960494 ~ 51079129 (+)

Expression


Co-expression Network