LOC110527913 (LOC106582897)


Basic Information

Item Value
gene id LOC110527913
gene name LOC106582897
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47790264 ~ 47794020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609519.2
tttttaccaatttaagaatacggctgtaacctagcctaatgtggaaaaagtcaagggttctgaatactttccgaaggcactgtatttagtagGCCTATACTAAATACATGCTGATTGCTACAATCCTGGAAAAAAAGTAGTTTGTAATTTTAAGCAGAATATTGATCTTGTGTTTTTTGTGCACCTATGcagaaataaaatgttattgacaTATCAAATGTCAACCCTCCATACGCACACCCACACATTGCTTTGTGTCAGGAGGATGTCAGATCCTTTGGCGTCACAGGAAGCTACTAGAGACATAAAAACCAGTCCTCATCCAGTGAGCCTCTGTCTTGTTTCTATCTACCCTTTGGACACATCTGCGTAAATGGAATTGAACAACAGAGCAGAGGAGTGAGACATATTCTCTTTCAATAAGccTATAGAGCCATACAGACATATACTGTAGCTAGAGAACAGCTGGTCATGGGGAATTTCCCCGTCAAAGTTCGATCCAGTATGCCAACCCTTGAGAATCCAACTGAACCTGCAATGTCAGACAATAACAGGCCCATGGTGGTGTCCCTTTATGACTTCCCCTCCCAAGATCCCTTGGAATCCAGCATCCGCATGGGGGAGAGGCTCACTGTGTTGTCAGATGATGGGGATTTTTGGATGGTGCGATCCACAACAACAGGCAATGAGAGTTACATCCCCAGCCACTACACTGCCAAAGTAATAAACAGGTGGCAGTATAATGGCATCAGCAGGTTAAATGCAGAGGAGCTGCTGCTGATGCCACACAATTACACAGGGGCTTTCCTGATACGACAGAGTCAGACAAACACAGACAGCTATTCGCTCTCGGTCCTTGGGAGGACCGACTCCTCGTACATGGGCACAGTGAAACACTACCGCATCCGTCGCCTCCAAAACGGCTGGTTCTACATCTCCCCCAGCCTCACCTTCTACACCCTGGGCCAATTGGTGGAACACTACTCTGAGTCAGCAGATGGGTTGTGCTGTTTACTGAGGGAGCCTTGCATCATCCAAGGCTCAAACAATACTACTATGACTAGACCGTACCCCAAAGCTATCAGGAGGCCCACCCTCAACTGGAAGGACGTAGACAGCTCATTGATCTTCAGTAAGGGCAGAGTGGATTCAGAGGACTCTCTGGTGAGCAAGGGGCTGAGGGAGGCCATGAGCTCATACCTCTACATGACAGAGGCCAGCTGCCAGGACTGTGGCAAACACTGGGATACCTGATGAGAGGGAAGACTGAGAGTAAAATAATAATACTGTCTGGTCTGCCGCTGCCGCTGCCCCGGTCCAACGGTACTAGTCCAGAAAGGGTGACCTAAACAAAAGCATAGAGGAAGTTAAAAAGAAGTAAGCCTACCATTTACCACCACAATGAAAACTACAAGCACAATTCATGTCTTGATGGTAAAATGTGGGTTTGGGTTCAGGTAGCCACAAGGAGCCGTGTTACTTGGCACTTCTAATGCTACTGGTTCTTGTTCTCAAGAGCACATTTCACAAGGTGAAACCtatgatttttatatatatatatatatatata

Function

NR:

description
src-like-adapter 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609519.2 True 1570 mRNA 0.46 8 47790264 47794020

Neighbor

gene id symbol gene type direction distance location
trpc4apa LOC106582896 coding downstream 1333 47774785 ~ 47788931 (-)
LOC110527909 LOC106582893 coding downstream 93591 47686832 ~ 47696673 (-)
LOC110527908 LOC106582890 coding downstream 128275 47641229 ~ 47661989 (-)
LOC110527904 LOC106582888 coding downstream 177650 47606510 ~ 47612614 (-)
si:dkeyp-97e7.9 LOC106582886 coding downstream 226309 47559568 ~ 47563955 (-)
LOC110527914 LOC106582898 coding upstream 1057 47795077 ~ 47862506 (-)
LOC110527915 LOC106582901 coding upstream 69977 47863997 ~ 47881064 (-)
LOC110527917 LOC106582900 coding upstream 87553 47881573 ~ 47936656 (-)
LOC110527918 LOC106582903 coding upstream 143376 47937396 ~ 47992180 (-)
LOC110527920 LOC106582905 coding upstream 280428 48074448 ~ 48118085 (-)
G616162 NA non-coding downstream 41178 47647543 ~ 47749086 (-)
G616112 NA non-coding downstream 249078 47540909 ~ 47541186 (-)
G616058 NA non-coding downstream 294198 47425852 ~ 47496066 (-)
G615256 NA non-coding downstream 559110 47230948 ~ 47231154 (-)
G615254 NA non-coding downstream 560797 47229181 ~ 47229467 (-)
G616328 NA non-coding upstream 214776 48008796 ~ 48009224 (-)
G616358 NA non-coding upstream 252896 48046916 ~ 48047153 (-)
G616364 NA non-coding upstream 258917 48052937 ~ 48053207 (-)
G616370 NA non-coding upstream 264407 48058427 ~ 48058632 (-)
G616402 NA non-coding upstream 337081 48131101 ~ 48131464 (-)
LOC110527888 LOC106582868 other downstream 520193 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 1914564 45874965 ~ 45875700 (-)
G611674 NA other downstream 3304512 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 4210300 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 4253299 43526691 ~ 43537037 (-)
G616880 NA other upstream 693027 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 1390404 49184424 ~ 49186096 (-)
G617632 NA other upstream 1401584 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 1501235 49295040 ~ 49297305 (-)
LOC110527961 LOC106565835 other upstream 1866015 49660022 ~ 49936575 (-)

Expression


Co-expression Network