LOC110510677 (LOC100136421)


Basic Information

Item Value
gene id LOC110510677
gene name LOC100136421
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48196782 ~ 48214546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983416.1
AGTGCAGCAAGAGATATGCAAATGTACAGGCATGATTATCCAGGGCAAGAATCAAATTTGTACTTTGGCGGGCAACAACAAGATGAAATGCCTAATTTACAGTTCTACCGTGGACAAATACCCTCCTCCCCTGATGGTGTCTTCATTGAGGACTTTCACAATAAATGGCACAGGAAATATTCAAAACTGGAAGAAGTTCACTCATACATCCAATGGTTGTTCCCACTTCAAGAACCAGGAATGAATTATCAAGCCAAGGAACTCACCAAGAAGGAAATTGAGGCTTTCCTTGAAGATGGCACAGCAAAGCAGAGGCTGGTTGCATCCTACAAGCTCATGCTGGACTTCTACGGCATAGAGCTGTCAAATGACATAACAGGGGAAGTGAAACGGGCGAACAACTGGCGTGAGAGATTTGACAACCTGGAAACaaacacacacaacaacctgCGCATCACCCGCATCTTGAAGTGCCTGGGCACTCTGGGGTTCCCCCACTACCAGGCCCCACTGGTCCGCTTCTTCCTAGAGCAGACTCTTGTCAAAGACAAGCTGTACAATGTGAAGGAAAATGCCCTGAACTACTTCATCTTCGCTGTCATTGATAAGCAAGAGCGCAGGAATTTAGTTAAGTATGCCTACGCACACTATGAGCCCAAACATGAGTTTGTGTGGTGCCCCAAGACAATCCAGAGTATATTCAGGGGAGAGACATTCCCAGATGATAATAACCCAATTGATCTGAAACAGGATGACATTGACAACACTGCCAGTTATCGGCAAATCGATACTGCGCAATCCAGTTATGAAGCTTCTGATAGAGGTAGCTCTATAACTACCCCCAACACTAGTCAACACCCCACCATCGATTCTCTGAAGCAATCAGATTATCAAACTAGCAGTGGCCATCCAGAGGGAAATACTGATAATTGGAGAAAGAGAGCTGCAGATAAGCCAACAGAGCATGAACTTCCCAAACGTATCAACATTTCAGAGGGAACGACTAACGCTGATCATGATGAAAGAAAAAATAAGGGAGCAGATCAATGATGTTTCAGAGGGAATGACTAACACCAATGGTCATGAGAGTACAGATGAGCAAccagagagggacaggggagatTTAGAGGAAAACAGACAGCAAAGATGAAAATGATGGTGATGGGGAGAATAAGGGAGCGAACCATGCACTGACGTTTCAGAGGGCCATATTAGCACATCCCGTGATAGTTAATTGAATAAGAAACCTACCGAAGAGGTACTGCTGAGCCCAGCAAAGGAAAATGAAGAGAAGATGCCAAAAGGAAATATTCAGTGTTTGACGTAAAAGTGACGATTGATTAGAGTATTCAACCATGTCATGCACTAATAAAGGAACATTATGTA
>XM_036983415.1
TATAGCTCAGACACGTGGGCGTATCAGTATTGGTCAGGTGTTTCCAGTATCTGCCATTTTGTGAACTCATGGAGTGAATGTGTTTTCAGTCAAACAAGTTTAACAGATTCAGAAGTGCAGCAAGGGACATGCAGAAGTACAGGCATGATTATCCAGGGCAAGAATCAAATTTGTACTTTGGCGGGCAACAACAAGATGAAATGCCTAATTTACAGTTCTACCGTGGACAAATACCCTCCTCCCCTGATGGTGTCTTCATTGAGGACTTTCACAATAAATGGCACAGGAAATATTCAAAACTGGAAGAAGTTCACTCATACATCCAATGGTTGTTCCCACTTCAAGAACCAGGAATGAATTATCAAGCCAAGGAACTCACCAAGAAGGAAATTGAGGCTTTCCTTGAAGATGGCACAGCAAAGCAGAGGCTGGTTGCATCCTACAAGCTCATGCTGGACTTCTACGGCATAGAGCTGTCAAATGACATAACAGGGGAAGTGAAACGGGCGAACAACTGGCGTGAGAGATTTGACAACCTGGAAACaaacacacacaacaacctgCGCATCACCCGCATCTTGAAGTGCCTGGGCACTCTGGGGTTCCCCCACTACCAGGCCCCACTGGTCCGCTTCTTCCTAGAGCAGACTCTTGTCAAAGACAAGCTGTACAATGTGAAGGAAAATGCCCTGAACTACTTCATCTTCGCTGTCATTGATAAGCAAGAGCGCAGGAATTTAGTTAAGTATGCCTACGCACACTATGAGCCCAAACATGAGTTTGTGTGGTGCCCCAAGACAATCCAGAGTATATTCAGGGGAGAGACATTCCCAGATGATAATAACCCAATTGATCTGAAACAGGATGACATTGACAACACTGCCAGTTATCGGCAAATCGATACTGCGCAATCCAGTTATGAAGCTTCTGATAGAGGTAGCTCTATAACTACCCCCAACACTAGTCAACACCCCACCATCGATTCTCTGAAGCAATCAGATTATCAAACTAGCAGTGGCCATCCAGAGGGAAATACTGATAATTGGAGAAAGAGAGCTGCAGATAAGCCAACAGAGCATGAACTTCCCAAACGTATCAACATTTCAGAGGGAACGACTAACGCTGATCATGATGAAAGAAAAAATAAGGGAGCAGATCAATGATGTTTCAGAGGGAATGACTAACACCAATGGTCATGAGAGTACAGATGAGCAAccagagagggacaggggagatTTAGAGGAAAACAGACAGCAAAGATGAAAATGATGGTGATGGGGAGAATAAGGGAGCGAACCATGCACTGACGTTTCAGAGGGCCATATTAGCACATCCCGTGATAGTTAATTGAATAAGAAACCTACCGAAGAGGTACTGCTGAGCCCAGCAAAGGAAAATGAAGAGAAGATGCCAAAAGGAAATATTCAGTGTTTGACGTAAAAGTGACGATTGATTAGAGTATTCAACCATGTCATGCACTAATAAAGGAACATTATGTA
>XM_036983414.1
CGGAAGTCTCGCCAGTGTTTCGATTTACGTTGAGTATAGAACATAGTGACAGGAAGAAACGAAAGTGAAATTATGAACATATTATTCGAATCCGAATGCAAGATATCGTGGTGGCTCTCGTCATTTAGTTAGTGATAAAACGAATATTTGTTACCTTGGAACATTTTGTATAGGCTACGGCGGAGTCCTACATCATTATCTTGTGCGCCGCTCCGGAGTTAGTGGGCTTCGAATGATAATTGGAACAGGTCTGCGAGCAGCGCTGAAATCGTCTACTAAATTGAGACGACACATGTCTAGGATGTTTCCCGGGATTGAACGGTTTAGGCACAAACGCACTTTATTACTGGTTCCAGTTCTCGCCTACATGGGCCTGCGCTGGAAGTCGCTCATACCAACTTGTTGGCCTTGGCTGGAACGCATCTGGAGATTTATCATGCCAAATGATCCTAGTCCGAATTCCCTTCCCAGAGATGAAGTGGAGAGTCAAGACTCTCAAGTAAGTGTAGTAGTGGAGCCTGAATCCTTTCCCAGTGGAAAAGTGGAGGTTCCGGTTCTCAGGTCATTTTATATTGAAGACACCGATGAATACTCCTGCATGTACGACTCGACATGGGAGGATCATCCAAGCGAAGAAACAAGTGAAAGAAGGACCAAACATGGGCAAGAATCAAATTTGTACTTTGGCGGGCAACAACAAGATGAAATGCCTAATTTACAGTTCTACCGTGGACAAATACCCTCCTCCCCTGATGGTGTCTTCATTGAGGACTTTCACAATAAATGGCACAGGAAATATTCAAAACTGGAAGAAGTTCACTCATACATCCAATGGTTGTTCCCACTTCAAGAACCAGGAATGAATTATCAAGCCAAGGAACTCACCAAGAAGGAAATTGAGGCTTTCCTTGAAGATGGCACAGCAAAGCAGAGGCTGGTTGCATCCTACAAGCTCATGCTGGACTTCTACGGCATAGAGCTGTCAAATGACATAACAGGGGAAGTGAAACGGGCGAACAACTGGCGTGAGAGATTTGACAACCTGGAAACaaacacacacaacaacctgCGCATCACCCGCATCTTGAAGTGCCTGGGCACTCTGGGGTTCCCCCACTACCAGGCCCCACTGGTCCGCTTCTTCCTAGAGCAGACTCTTGTCAAAGACAAGCTGTACAATGTGAAGGAAAGTGCCCTGAACTACTTCATCTTCGCTGTCATTGATAAGCAAGAGCGCAGGAATTTAGTTAAGTATGCCTACGCACACTATGAGCCCAAACATGAGTTTGTGTGGTGCCCCAAGACAATCCAGAGTATATTCAGGGGAGAGACATTCCCAGATGATAATAACCCAATTGATCTGAAACAGGATGACATTGACAACACTGCCAGTTATCGGCAAATCGATACTGCGCAATCCAGTTATGAAGCTTCTGATAGAGGTAGCTCTATAACTACCCCCAACACTAGTCAACACCCCACCATCGATTCTCTGAAGCAATCAGATTATCAAACTAGCAGTGGCCATCCAGAGGGAAATACTGATAATTGGAGAAAGAGAGCTGCAGATAAGCCAACAGAGCATGAACTTCCCAAACGTATCAACATTTCAGAGGGAACGACTAACGCTGATCATGATGAAAGAAAAAATAAGGGAGCAGATCAATGATGTTTCAGAGGGAATGACTAACACCAATGGTCATGAGAGTACAGATGAGCAAccagagagggacaggggagatTTAGAGGAAAACAGACAGCAAAGATGAAAATGATGGTGATGGGGAGAATAAGGGAGCGAACCATGCACTGACGTTTCAGAGGGCCATATTAGCACATCCCGTGATAGTTAATTGAATAAGAAACCTACCGAAGAGGTACTGCTGAGCCCAGCAAAGGAAAATGAAGAGAAGATGCCAAAAGGAAATATTCAGTGTTTGACGTAAAAGTGACGATTGATTAGAGTATTCAACCATGTCATGCACTAATAAAGGAACATTATGTA
>XM_036983413.1
GGAAGTCTCGCCAGTGTTTCGATTTACGTTGAGTATAGAACATAGTGACAGGAAGAAACGAAAGTGAAATTATGAACATATTATTCGAATCCGAATGCAAGATATCGTGGTGGCTCTCGTCATTTAGTTAGTGATAAAACGAATATTTGTTACCTTGGAACATTTTGTATAGGCTACGGCGGAGTCCTACATCATTATCTTGTGCGCCGCTCCGGAGTTAGTGGGCTTCGAATGATAATTGGAACAGGTCTGCGAGCAGCGCTGAAATCGTCTACTAAATTGAGACGACACATGTCTAGGATGTTTCCCGGGATTGAACGGTTTAGGCACAAACGCACTTTATTACTGGTTCCAGTTCTCGCCTACATGGGCCTGCGCTGGAAGTCGCTCATACCAACTTGTTGGCCTTGGCTGGAACGCATCTGGAGATTTATCATGCCAAATGATCCTAGTCCGAATTCCCTTCCCAGAGATGAAGTGGAGAGTCAAGACTCTCAAGTAAGTGTAGTAGTGGAGCCTGAATCCTTTCCCAGTGGAAAAGTGGAGGTTCCGGTTCTCAGGTCATTTTATATTGAAGACACCGATGAATACTCCTGCATGTACGACTCGACATGGGAGGATCATCCAAGCGAAGAAACAAGTGAAAGAAGGACCAAACATTCAAACAAGTTTAACAGATTCAGAAGTGCAGCAAGGGACATGCAGAAGTACAGGCATGATTATCCAGGGCAAGAATCAAATTTGTACTTTGGCGGGCAACAACAAGATGAAATGCCTAATTTACAGTTCTACCGTGGACAAATACCCTCCTCCCCTGATGGTGTCTTCATTGAGGACTTTCACAATAAATGGCACAGGAAATATTCAAAACTGGAAGAAGTTCACTCATACATCCAATGGTTGTTCCCACTTCAAGAACCAGGAATGAATTATCAAGCCAAGGAACTCACCAAGAAGGAAATTGAGGCTTTCCTTGAAGATGGCACAGCAAAGCAGAGGCTGGTTGCATCCTACAAGCTCATGCTGGACTTCTACGGCATAGAGCTGTCAAATGACATAACAGGGGAAGTGAAACGGGCGAACAACTGGCGTGAGAGATTTGACAACCTGGAAACaaacacacacaacaacctgCGCATCACCCGCATCTTGAAGTGCCTGGGCACTCTGGGGTTCCCCCACTACCAGGCCCCACTGGTCCGCTTCTTCCTAGAGCAGACTCTTGTCAAAGACAAGCTGTACAATGTGAAGGAAAGTGCCCTGAACTACTTCATCTTCGCTGTCATTGATAAGCAAGAGCGCAGGAATTTAGTTAAGTATGCCTACGCACACTATGAGCCCAAACATGAGTTTGTGTGGTGCCCCAAGACAATCCAGAGTATATTCAGGGGAGAGACATTCCCAGATGATAATAACCCAATTGATCTGAAACAGGATGACATTGACAACACTGCCAGTTATCGGCAAATCGATACTGCGCAATCCAGTTATGAAGCTTCTGATAGAGGTAGCTCTATAACTACCCCCAACACTAGTCAACACCCCACCATCGATTCTCTGAAGCAATCAGATTATCAAACTAGCAGTGGCCATCCAGAGGGAAATACTGATAATTGGAGAAAGAGAGCTGCAGATAAGCCAACAGAGCATGAACTTCCCAAACGTATCAACATTTCAGAGGGAACGACTAACGCTGATCATGATGAAAGAAAAAATAAGGGAGCAGATCAATGATGTTTCAGAGGGAATGACTAACACCAATGGTCATGAGAGTACAGATGAGCAAccagagagggacaggggagatTTAGAGGAAAACAGACAGCAAAGATGAAAATGATGGTGATGGGGAGAATAAGGGAGCGAACCATGCACTGACGTTTCAGAGGGCCATATTAGCACATCCCGTGATAGTTAATTGAATAAGAAACCTACCGAAGAGGTACTGCTGAGCCCAGCAAAGGAAAATGAAGAGAAGATGCCAAAAGGAAATATTCAGTGTTTGACGTAAAAGTGACGATTGATTAGAGTATTCAACCATGTCATGCACTAATAAAGGAACATTATGTA
>TU700886
AAGTGCAGCAAGAGATATGCAAATGTACAGGCATGATTATCCAGTAAGTCATTATTCTCTTCACACAATCTTACACACTTTATGCTATAAAATATATCCACCTCAATCATAGTATGTTGCTGCTGCTGACTATCAATCAGTCAATAGTTTGTACATAGTCTTTAGACCTTTGTTCTTGTTTCCACAGGGGAAATAATCAAATTTGTACATTGGTGGGCAACAAAAAGTAAGCAAGTACTCATCTCTTTATGTAGTACATGGAAAGGCGGGATGATTTGAGTCATCATTTTACTGGCCAATTCCTCTGAGATTATTGTACTGTTTTAAAAC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983416.1 False 1386 mRNA 0.44 8 48196783 48214546
XM_036983415.1 False 1499 mRNA 0.44 8 48197822 48214546
XM_036983414.1 False 2005 mRNA 0.45 7 48209538 48214546
XM_036983413.1 False 2070 mRNA 0.44 8 48209539 48214546
TU700886 True 330 lncRNA 0.35 1 48196782 48197111

Neighbor

gene id symbol gene type direction distance location
LOC110527921 LOC106582906 coding upstream 28579 48127960 ~ 48168204 (+)
LOC110527919 LOC106565791 coding upstream 128587 48066923 ~ 48068196 (+)
LOC118965382 NA coding upstream 174608 48021489 ~ 48022175 (+)
LOC110527911 NA coding upstream 422565 47755267 ~ 47774218 (+)
LOC110527910 LOC106582895 coding upstream 481494 47711530 ~ 47715289 (+)
LOC110527924 kcnkf coding downstream 63135 48277681 ~ 48282177 (+)
LOC110527925 LOC106582912 coding downstream 256141 48470687 ~ 48714043 (+)
lsm14b LOC106582791 coding downstream 522725 48737271 ~ 48740708 (+)
LOC110527931 LOC106582916 coding downstream 620648 48835194 ~ 48845739 (+)
LOC110527932 LOC106582918 coding downstream 647279 48861825 ~ 48874455 (+)
G615855 NA non-coding upstream 13488 48183096 ~ 48183295 (+)
G615848 NA non-coding upstream 19213 48177368 ~ 48177570 (+)
G615843 NA non-coding upstream 26399 48170170 ~ 48170384 (+)
G615792 NA non-coding upstream 34070 48134319 ~ 48162713 (+)
G615834 NA non-coding upstream 65462 48131014 ~ 48131321 (+)
G615875 NA non-coding downstream 5181 48219727 ~ 48220376 (+)
G616533 NA non-coding downstream 166576 48381122 ~ 48381358 (+)
G616545 NA non-coding downstream 176351 48390897 ~ 48391124 (+)
G616550 NA non-coding downstream 180945 48395491 ~ 48395723 (+)
G616560 NA non-coding downstream 185695 48400241 ~ 48400505 (+)
G615624 NA other upstream 357061 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 1558829 46629591 ~ 46638492 (+)
G613664 NA other upstream 1917450 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 4168555 44002556 ~ 44035143 (+)
G610622 NA other upstream 4364903 43829004 ~ 43831880 (+)
G617133 NA other downstream 612281 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 1357774 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 2088884 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 2745948 50960494 ~ 51079129 (+)
G621650 NA other downstream 4176802 52391348 ~ 52391633 (+)

Expression


Co-expression Network