lsm14b (LOC106582791)


Basic Information

Item Value
gene id lsm14b
gene name LOC106582791
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48737271 ~ 48740708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609555.2
CAACTAATGCATTGCTCTATTAAAAGGGACTTGTTGCAGTGATACGATACTCATTTCATTTATCTCAAACAGCAGGCGTGGCTAATGGAGGCTTGTCGCCAAATGGTTTTGTAATATAACGCACCTGTTTTCACAGATTGTGCACCTGCAGATACATTATAAATTCGAGTTTGGTGTCAGCCTTGGGGGAATGCGGAAACAACGATGGCTTGTTTTGAGAATTCGAAATAAGATATTACTGTAACAGCAACAATGAGCACCGGAACACCTTATATTGGAAGTAAAATAAGTCTAATCTCCAAGGCCGGGATTCGTTATGAGGGCGTTTTGTATACAATCGACACGGATAACGCAACAGTGGCTTTGGCAAAGGTTAAATCATTCGGGACAGAACGACGGCCTACAGACAGACCAGTGCCACCCAAAGATGACATTTATGAATACATAATTTTCAGAGGGAGTGACATCAAGGACATAACGGTGTGTGAGCCGCTTAAACCACACCATGGTTTACCTCAGGACCCTGCCATTGTACAGTCATCCATTGGGAGCTCCCTGTCCACATACCCATCCCAGGCCCCATACAGTCCCTACCGGAGTATGGTGCCTTCCTACAACCAACTGGCTGCCAGCTCTCTACTCAACCAGCAGTATGCTGCTTCCCTGGGTCTAGGAGCGGGACTTCACAGCCTTCCAGCAAGACGAGGCCCGATGGTAGAGCAGGCTGTCCAGACTGTACCAGCTGAGAATGCTGCTGAAAAAAGGGTCCAGTCAGCCCCCCAGCAGCAAGGCAGAGAGTCTGGTTGGCTTTCCCAGCCCTCTGGCAGAGATGGCCATCTGTCTCAGAGGGCTGCTTCCAGTGGTCAAGCACTGCGTGGCACAGCCCAGGAACAAAGGCAAGGCAATGATGAGAACTGCAGACCACAGAGACGAAGACAAGGCAATCGTAGGGCAAGGAACCGTGGGAGAGGTCAGCTTCTTGTAGGAAACTCAAAAGCCAGAACCTTACAATTTGAGTCTGACTTTGATTTTGAATCTGCCAATGCTCAGTTCCACAAAGATGAACTCGAGAAGGAGCTTCAGGAAAAGTTGACCATTAAAGACCCAGAGGAGGAGTCTGGGGTTAGTGAGGGCCAGAACACTGAGGGCACAGTGGAGGATCCTCCTGGGGAGAAATTCTACTATGACAAAACGAAGTGCTTCTTTGACAATGTCTCATCTGAGATGAAGtctagTAGGACCACCtgggcagaggagaggaagctGAATGTGGAGACGTTTGGCGTTCCGGGCCGATTCCTGAGGGGCAGAGGCTTCCGAGGGGACAATCGtgggagaggagctgggagggccAACCAGCGCCCCATGCCCAAAGTAGACAGTGCAAGGGTGTGAACAGGTGTGCAGTTACCTACCGCTTACTGTAATAATGTTAGCTTTTATTTGCGTTTTAGTTTCCTAGGTGCTTTCCTACTACCATCACTTGGCAtcagtatttttgttttatcttttACTGATATTTATGTAAGAGTTGATACTGAAGTGTCCTATGATTCCTTCCCTTCCTCTTGAAAGACTTGTTCTTGGCCCTGGAGCCCTTCAATCCAAATGATTTTTAAGTTGCCGTTTCTTTTCATTTCTCATTTGTGCCTTGTCAAAGTTGTGTACGGAACTTCACTATTTGAGCAGGAATTGCAATTGTGTACATAGTTTGTGTTCAGAATCCATTTTCATTCATGGTAGTGCAATTTCTGTACACATTAGAACATCATTCTTGATTTTGCCTTGTTAAAAAAACTGCAGGCATAATTCTTCAGGAAATGTTTACTTAGACTGGACCAAAGCGATGtactttatttattttctattatttctTGTAAATAAAATAAGTTGGCATGTCTATTGACTGGCCAAGTATGTACACATGGCCCTTAAAGGGTGAGGTTTTTTTCCACATGGTAAAATTATGGAAATTGGTTAGTTGTACAAAagcaaaacttttttttttttctctgtacTGAATGTAATTGCAATTGTGGGACACCTGTATAGTTACTAATCCAGTAATAAACTACATGAGAAATTGCTTGTGGCCTGA
>XM_021609556.2
CAACTAATGCATTGCTCTATTAAAAGGGACTTGTTGCAGTGATACGATACTCATTTCATTTATCTCAAACAGCAGGCGTGGCTAATGGAGGCTTGTCGCCAAATGGTTTTGTAATATAACGCACCTGTTTTCACAGATTGTGCACCTGCAGATACATTATAAATTCGAGTTTGGTGTCAGCCTTGGGGGAATGCGGAAACAACGATGGCTTGTTTTGAGAATTCGAAATAAGATATTACTGTAACAGCAACAATGAGCACCGGAACACCTTATATTGGAAGTAAAATAAGTCTAATCTCCAAGGCCGGGATTCGTTATGAGGGCGTTTTGTATACAATCGACACGGATAACGCAACAGTGGCTTTGGCAAAGGTTAAATCATTCGGGACAGAACGACGGCCTACAGACAGACCAGTGCCACCCAAAGATGACATTTATGAATACATAATTTTCAGAGGGAGTGACATCAAGGACATAACGGTGTGTGAGCCGCTTAAACCACACCATGGTTTACCTCAGGACCCTGCCATTGTACAGTCATCCATTGGGAGCTCCCTGTCCACATACCCATCCCAGGCCCCATACAGTCCCTACCGGAGTATGGTGCCTTCCTACAACCAACTGGCTGCCAGCTCTCTACTCAACCAGCAGTATGCTGCTTCCCTGGGTCTAGGAGCGGGACTTCACAGCCTTCCAGCAAGACGAGGCCCGATGGTAGAGCAGGCTGTCCAGACTGTACCAGCTGAGAATGCTGCTGAAAAAAGGGTCCAGTCAGCCCCCCAGCAGCAAGGCAGAGAGTCTGGTTGGCTTTCCCAGCCCTCTGGCAGAGATGGCCATCTGTCTCAGAGGGCTGCTTCCAGTGGTCAAGCACTGCGTGGCACAGCCCAGGAACAAAGGCAAGGCAATGATGAGAACTGCAGACCACAGAGACGAAGACAAGGCAATCGTAGGGCAAGGAACCGTGGGAGAGGTCAGCTTCTTGTAGGAAACTCAAAAGCCAGAACCTTACAATTTGAGTCTGACTTTGATTTTGAATCTGCCAATGCTCAGTTCCACAAAGATGAACTCGAGAAGGAGCTTCAGGAAAAGTTGACCATTAAAGACCCAGAGGAGGAGTCTGGGGTTAGTGAGGGCCAGAACACTGAGGGCACAGTGGAGGATCCTCCTGGGGAGAAATTCTACTATGACAAAACGAAGTGCTTCTTTGACAATGTCTCATCTGAGATGAAGtctagGACCACCtgggcagaggagaggaagctGAATGTGGAGACGTTTGGCGTTCCGGGCCGATTCCTGAGGGGCAGAGGCTTCCGAGGGGACAATCGtgggagaggagctgggagggccAACCAGCGCCCCATGCCCAAAGTAGACAGTGCAAGGGTGTGAACAGGTGTGCAGTTACCTACCGCTTACTGTAATAATGTTAGCTTTTATTTGCGTTTTAGTTTCCTAGGTGCTTTCCTACTACCATCACTTGGCAtcagtatttttgttttatcttttACTGATATTTATGTAAGAGTTGATACTGAAGTGTCCTATGATTCCTTCCCTTCCTCTTGAAAGACTTGTTCTTGGCCCTGGAGCCCTTCAATCCAAATGATTTTTAAGTTGCCGTTTCTTTTCATTTCTCATTTGTGCCTTGTCAAAGTTGTGTACGGAACTTCACTATTTGAGCAGGAATTGCAATTGTGTACATAGTTTGTGTTCAGAATCCATTTTCATTCATGGTAGTGCAATTTCTGTACACATTAGAACATCATTCTTGATTTTGCCTTGTTAAAAAAACTGCAGGCATAATTCTTCAGGAAATGTTTACTTAGACTGGACCAAAGCGATGtactttatttattttctattatttctTGTAAATAAAATAAGTTGGCATGTCTATTGACTGGCCAAGTATGTACACATGGCCCTTAAAGGGTGAGGTTTTTTTCCACATGGTAAAATTATGGAAATTGGTTAGTTGTACAAAagcaaaacttttttttttttctctgtacTGAATGTAATTGCAATTGTGGGACACCTGTATAGTTACTAATCCAGTAATAAACTACATGAGAAATTGCTTGTGGCCTGA

Function

NR:

description
protein LSM14 homolog B-like isoform X2

GO: NA

KEGG:

id description
K18749 LSM14, RAP55, SCD6; protein LSM14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609555.2 False 2098 mRNA 0.45 8 48737271 48740708
XM_021609556.2 True 2095 mRNA 0.45 8 48737271 48740708

Neighbor

gene id symbol gene type direction distance location
LOC110527925 LOC106582912 coding upstream 23228 48470687 ~ 48714043 (+)
LOC110527924 kcnkf coding upstream 455094 48277681 ~ 48282177 (+)
LOC110510677 LOC100136421 coding upstream 522725 48196782 ~ 48214546 (+)
LOC110527921 LOC106582906 coding upstream 569067 48127960 ~ 48168204 (+)
LOC110527919 LOC106565791 coding upstream 669075 48066923 ~ 48068196 (+)
LOC110527931 LOC106582916 coding downstream 94486 48835194 ~ 48845739 (+)
LOC110527932 LOC106582918 coding downstream 121117 48861825 ~ 48874455 (+)
cidec cidec coding downstream 144501 48885209 ~ 48896546 (+)
LOC110527934 LOC106582919 coding downstream 155944 48896652 ~ 48915101 (+)
trnaf-gaa-78 NA coding downstream 185011 48925719 ~ 48925791 (+)
G616834 NA non-coding upstream 22578 48714472 ~ 48714693 (+)
G616719 NA non-coding upstream 149440 48539913 ~ 48587831 (+)
G616660 NA non-coding upstream 267917 48468950 ~ 48469354 (+)
G616643 NA non-coding upstream 272333 48464705 ~ 48464938 (+)
G616607 NA non-coding upstream 310203 48426864 ~ 48427068 (+)
G617119 NA non-coding downstream 70650 48811358 ~ 48811629 (+)
G617122 NA non-coding downstream 72311 48813019 ~ 48813288 (+)
G617126 NA non-coding downstream 77344 48818052 ~ 48818306 (+)
G617129 NA non-coding downstream 80991 48821699 ~ 48821995 (+)
G617130 NA non-coding downstream 83343 48824051 ~ 48824312 (+)
G615624 NA other upstream 897549 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 2099317 46629591 ~ 46638492 (+)
G613664 NA other upstream 2457938 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 4709043 44002556 ~ 44035143 (+)
G610622 NA other upstream 4905391 43829004 ~ 43831880 (+)
G617133 NA other downstream 86119 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 831612 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 1562722 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 2219786 50960494 ~ 51079129 (+)
G621650 NA other downstream 3650640 52391348 ~ 52391633 (+)

Expression


Co-expression Network