LOC110527932 (LOC106582918)


Basic Information

Item Value
gene id LOC110527932
gene name LOC106582918
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48861825 ~ 48874455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983423.1
CTGTAAACACCGGCAGAGCAGAGCCCTGTGCCAGCGACGCACTCCAATGCTGCTGAACCTCACCACAGAGAAGGGCCAACAGCAAACACCATGCAGGCCTGCACGCAGGACCCTCAGACACTTAACACTCTGACTAGCCATTCATACTAAACACAGACTTGGCCTACAGTAACACTTAAACAGCTTGTAAAGTAAGTGGTTATTACAGCCACtgtatctgactgtgtgtttatgtacatgtgtgtgtatcagCGCCACCTGGTGAGGGAAGAGTGAGGCACAGCCTCAACCTGCCCATCATCAACCCAGAGAGACCGCAGACAACCAAAGAATCTCTAACTCCAGGGagggcaggtagcatagtggttagagctttgggccagtaaccgaatccATAaccgaatcccgagctgacaagGGAgagtttgttttgcatggcccGGGGTACAGACTCCGGCTACCTGGGGCAACGGTGTAAAACGAACTCGCCCATTCTGACTGGGAGTGTGGCTGCCATTTTCGGACCATTCTGGAACTTTGAAGGTCGATGCCTTGGCTGATAGAGATCAACGCCAGCCCCACCACGGGCACCTCTACAGCAGTGACAACATGCCTGTGTGCTGCCGTGCAGGGGGACACTCCCTGGGTGGACCTGGACCTCTGGCTGGACCGAGGGGTACACACTGGGGGCTTTCAGCTGATATACAAACAGcccatcctgctgtctctacggCGTGGCCAGGCGACGGTGACCTACGCCCAGAGCCCTCTAGGAGCTCCGGAGACCCGTCTCACTGCCCTGGACAATGGCCTGAGGATCGCATCCGAGGAGACTGGACACGGCACATGCACTGTTGGGTTGTGGATCAGCTGTGGAAGTCGCTACGAGACTGAGAAGAACAATGGAGCTGGGTTCTTCCTGGAGCATATGGCTTTCAAGGGGACAAAGAAGCACCCCCAGATGGCCCTGGAGCATCAGGTGGAGTCCATGGGTGCTCACCTGAGTGCATACACTTCCCGGGAGCACACTGCCTACTACATGAAGACCCTGGCCAAGGACCTGCCCAAAGCGGTGGCGCTGTTATCCGAGGTGCTGCAGAGCAATGTCCTGAGCGAGGCTGACATTGAGCAGCAGAGGAGTGTAGTACTGAAAgagctggaggaggtggagggcagTCTGCAGGACGTGTGTCTGGACCTGCTGCACGCTACAGCTTTCCAGGGCACCCCCTTAGGACACAGTGTTCTGGGGCCATCCCAAAacgccagGACTTTGAGTCGACAGGATCTGGTAGATTTCATCAGCAGCCACTACAAGGCCCCCCGCATGGTGCTGGCAGCTGCTGGAGGTGTGACTCACGAGGAGCTGGTTGGGTTGGCCAAGCAGCACTTCAGTGGCGTTTCCTTTGAGTACGAGGATGATGCTGTGCCTGTTCTGTCCCCCTGCCGCTTCTCTGGCAGCGAGATCCGCATGCGTGATGACGATATGCCCCTGGCACACATTGCCATCGCTGTGGAGGGTGCCAGTGCCGCCAGCCCAGACATTGTGCCTCTCATGGTGGCCAACTCCATCATTGGCAGCTATGACATCACTTTCGGTGGTGGAAAGCACCTGAGCAGCCGCCTGGCTCGTCTAGCCTCAGAGGAGAGTCTGTGCCACAGCTTCCAGGCCTTCCACTCCTCTTACAGCGACACTGGTCTGCTGGGCATCTACTTTGTCACCGACAAACACCACATCGACGACATGATGCACTGGTCACAGAACGCATGGATGAACTTGTGCACCACAGTGACAGAGAGTGACATTGCCAGAGCCAAGAATGCCCTCAAGGCCAGCCTGGTGGGACAGCTCAACGGAACGACACCGATATGTGATGACATCGGCAGACATGTCCTGAACTACGGCCGCCGTATCCCTCTGGCCGAGTGGGATGCCCGCATCAACgCTGTGACGCCCAAGATGGTGCGTGACATCTGCTCCAAATACATCTATGACAAGTGTCCCGCCGTGTCTGCTGTTGGCCCCATTGAGCAGCTGCCTGACTACAACAGGATGCGCAGTGCCATGTACTGGCTCCGCTTCTAAGATCCCCCATAGTGTTGCTATGCTCCTCCACTCCCATACTCCTCCCATCACTGCAAGAGTAAAGAACCGAGGACTGCCTCAGCTCATTAGCACAGACTGGTATGGACTCCAggccttctctcctctcactacGTCAGTTCTAATTGGTTATGAGGGAGAGAACCATGGTGTTGAGGGTGTGCATAAGTTGTGTTCCATTTCCTTGTATTTGTCGCTGATCTTGGAAGATTGTAATACAGAAGATTTATTATCACTGAGCCTTTTCAGGCACCTGGTACTGTTCTGGGGACACCTGAACACATCCAGTGATGCATATACTTTACAATCATAGCACTGTACAACCAGTTGTGGAGAAGTATTTATGAATTGAGGCAATGTTTTGTTTCTGTCCTATTGTACATAAACTCATTCTGACATTCAA
>XM_036983424.1
ATCATAGGGAgagtttgttttgcatggcccGGGGTACAGACTCCGGCTACCTGGGGCAACGGTGTAAAACGAACTCGCCCATTCTGACTGGGAGTGTGGCTGCCATTTTCGGACCATTCTGGAACTTTGAAGGTCGATGCCTTGGCTGATAGAGATCAACGCCAGCCCCACCACGGGCACCTCTACAGCAGTGACAACATGCCTGTGTGCTGCCGTGCAGGGGGACACTCCCTGGGTGGACCTGGACCTCTGGCTGGACCGAGGGGTACACACTGGGGGCTTTCAGCTGATATACAAACAGcccatcctgctgtctctacggCGTGGCCAGGCGACGGTGACCTACGCCCAGAGCCCTCTAGGAGCTCCGGAGACCCGTCTCACTGCCCTGGACAATGGCCTGAGGATCGCATCCGAGGAGACTGGACACGGCACATGCACTGTTGGGTTGTGGATCAGCTGTGGAAGTCGCTACGAGACTGAGAAGAACAATGGAGCTGGGTTCTTCCTGGAGCATATGGCTTTCAAGGGGACAAAGAAGCACCCCCAGATGGCCCTGGAGCATCAGGTGGAGTCCATGGGTGCTCACCTGAGTGCATACACTTCCCGGGAGCACACTGCCTACTACATGAAGACCCTGGCCAAGGACCTGCCCAAAGCGGTGGCGCTGTTATCCGAGGTGCTGCAGAGCAATGTCCTGAGCGAGGCTGACATTGAGCAGCAGAGGAGTGTAGTACTGAAAgagctggaggaggtggagggcagTCTGCAGGACGTGTGTCTGGACCTGCTGCACGCTACAGCTTTCCAGGGCACCCCCTTAGGACACAGTGTTCTGGGGCCATCCCAAAacgccagGACTTTGAGTCGACAGGATCTGGTAGATTTCATCAGCAGCCACTACAAGGCCCCCCGCATGGTGCTGGCAGCTGCTGGAGGTGTGACTCACGAGGAGCTGGTTGGGTTGGCCAAGCAGCACTTCAGTGGCGTTTCCTTTGAGTACGAGGATGATGCTGTGCCTGTTCTGTCCCCCTGCCGCTTCTCTGGCAGCGAGATCCGCATGCGTGATGACGATATGCCCCTGGCACACATTGCCATCGCTGTGGAGGGTGCCAGTGCCGCCAGCCCAGACATTGTGCCTCTCATGGTGGCCAACTCCATCATTGGCAGCTATGACATCACTTTCGGTGGTGGAAAGCACCTGAGCAGCCGCCTGGCTCGTCTAGCCTCAGAGGAGAGTCTGTGCCACAGCTTCCAGGCCTTCCACTCCTCTTACAGCGACACTGGTCTGCTGGGCATCTACTTTGTCACCGACAAACACCACATCGACGACATGATGCACTGGTCACAGAACGCATGGATGAACTTGTGCACCACAGTGACAGAGAGTGACATTGCCAGAGCCAAGAATGCCCTCAAGGCCAGCCTGGTGGGACAGCTCAACGGAACGACACCGATATGTGATGACATCGGCAGACATGTCCTGAACTACGGCCGCCGTATCCCTCTGGCCGAGTGGGATGCCCGCATCAACgCTGTGACGCCCAAGATGGTGCGTGACATCTGCTCCAAATACATCTATGACAAGTGTCCCGCCGTGTCTGCTGTTGGCCCCATTGAGCAGCTGCCTGACTACAACAGGATGCGCAGTGCCATGTACTGGCTCCGCTTCTAAGATCCCCCATAGTGTTGCTATGCTCCTCCACTCCCATACTCCTCCCATCACTGCAAGAGTAAAGAACCGAGGACTGCCTCAGCTCATTAGCACAGACTGGTATGGACTCCAggccttctctcctctcactacGTCAGTTCTAATTGGTTATGAGGGAGAGAACCATGGTGTTGAGGGTGTGCATAAGTTGTGTTCCATTTCCTTGTATTTGTCGCTGATCTTGGAAGATTGTAATACAGAAGATTTATTATCACTGAGCCTTTTCAGGCACCTGGTACTGTTCTGGGGACACCTGAACACATCCAGTGATGCATATACTTTACAATCATAGCACTGTACAACCAGTTGTGGAGAAGTATTTATGAATTGAGGCAATGTTTTGTTTCTGTCCTATTGTACATAAACTCATTCTGACATTCAA
>XM_021609566.2
TGACGTCACAGTTCTATACAAGGACTTCGCGGGCGTCCACGTTGCGGAACGTGCGCGCAGCTGATCTTTCTTTATTTGCCTGGAAAAGATGGCAGCGTCCGTGTGCCGAGTCGGGAGCACGGTGGGTCGAGCCCTAGCCAAAGCACGTAGCcccatcctgctgtctctacggCGTGGCCAGGCGACGGTGACCTACGCCCAGAGCCCTCTAGGAGCTCCGGAGACCCGTCTCACTGCCCTGGACAATGGCCTGAGGATCGCATCCGAGGAGACTGGACACGGCACATGCACTGTTGGGTTGTGGATCAGCTGTGGAAGTCGCTACGAGACTGAGAAGAACAATGGAGCTGGGTTCTTCCTGGAGCATATGGCTTTCAAGGGGACAAAGAAGCACCCCCAGATGGCCCTGGAGCATCAGGTGGAGTCCATGGGTGCTCACCTGAGTGCATACACTTCCCGGGAGCACACTGCCTACTACATGAAGACCCTGGCCAAGGACCTGCCCAAAGCGGTGGCGCTGTTATCCGAGGTGCTGCAGAGCAATGTCCTGAGCGAGGCTGACATTGAGCAGCAGAGGAGTGTAGTACTGAAAgagctggaggaggtggagggcagTCTGCAGGACGTGTGTCTGGACCTGCTGCACGCTACAGCTTTCCAGGGCACCCCCTTAGGACACAGTGTTCTGGGGCCATCCCAAAacgccagGACTTTGAGTCGACAGGATCTGGTAGATTTCATCAGCAGCCACTACAAGGCCCCCCGCATGGTGCTGGCAGCTGCTGGAGGTGTGACTCACGAGGAGCTGGTTGGGTTGGCCAAGCAGCACTTCAGTGGCGTTTCCTTTGAGTACGAGGATGATGCTGTGCCTGTTCTGTCCCCCTGCCGCTTCTCTGGCAGCGAGATCCGCATGCGTGATGACGATATGCCCCTGGCACACATTGCCATCGCTGTGGAGGGTGCCAGTGCCGCCAGCCCAGACATTGTGCCTCTCATGGTGGCCAACTCCATCATTGGCAGCTATGACATCACTTTCGGTGGTGGAAAGCACCTGAGCAGCCGCCTGGCTCGTCTAGCCTCAGAGGAGAGTCTGTGCCACAGCTTCCAGGCCTTCCACTCCTCTTACAGCGACACTGGTCTGCTGGGCATCTACTTTGTCACCGACAAACACCACATCGACGACATGATGCACTGGTCACAGAACGCATGGATGAACTTGTGCACCACAGTGACAGAGAGTGACATTGCCAGAGCCAAGAATGCCCTCAAGGCCAGCCTGGTGGGACAGCTCAACGGAACGACACCGATATGTGATGACATCGGCAGACATGTCCTGAACTACGGCCGCCGTATCCCTCTGGCCGAGTGGGATGCCCGCATCAACgCTGTGACGCCCAAGATGGTGCGTGACATCTGCTCCAAATACATCTATGACAAGTGTCCCGCCGTGTCTGCTGTTGGCCCCATTGAGCAGCTGCCTGACTACAACAGGATGCGCAGTGCCATGTACTGGCTCCGCTTCTAAGATCCCCCATAGTGTTGCTATGCTCCTCCACTCCCATACTCCTCCCATCACTGCAAGAGTAAAGAACCGAGGACTGCCTCAGCTCATTAGCACAGACTGGTATGGACTCCAggccttctctcctctcactacGTCAGTTCTAATTGGTTATGAGGGAGAGAACCATGGTGTTGAGGGTGTGCATAAGTTGTGTTCCATTTCCTTGTATTTGTCGCTGATCTTGGAAGATTGTAATACAGAAGATTTATTATCACTGAGCCTTTTCAGGCACCTGGTACTGTTCTGGGGACACCTGAACACATCCAGTGATGCATATACTTTACAATCATAGCACTGTACAACCAGTTGTGGAGAAGTATTTATGAATTGAGGCAATGTTTTGTTTCTGTCCTATTGTACATAAACTCATTCTGACATTCAA

Function

NR:

description
cytochrome b-c1 complex subunit 1, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00414 QCR1, UQCRC1; ubiquinol-cytochrome c reductase core subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983423.1 False 2507 mRNA 0.54 15 48861825 48874455
XM_036983424.1 False 2096 mRNA 0.55 13 48862942 48874455
XM_021609566.2 True 1946 mRNA 0.55 12 48866593 48874455

Neighbor

gene id symbol gene type direction distance location
LOC110527931 LOC106582916 coding upstream 16086 48835194 ~ 48845739 (+)
lsm14b LOC106582791 coding upstream 121117 48737271 ~ 48740708 (+)
LOC110527925 LOC106582912 coding upstream 147782 48470687 ~ 48714043 (+)
LOC110527924 kcnkf coding upstream 579648 48277681 ~ 48282177 (+)
LOC110510677 LOC100136421 coding upstream 647279 48196782 ~ 48214546 (+)
cidec cidec coding downstream 10754 48885209 ~ 48896546 (+)
LOC110527934 LOC106582919 coding downstream 22197 48896652 ~ 48915101 (+)
trnaf-gaa-78 NA coding downstream 51264 48925719 ~ 48925791 (+)
LOC110527936 LOC106582920 coding downstream 77192 48951647 ~ 48960790 (+)
LOC110527938 sc61a coding downstream 100809 48975264 ~ 48987002 (+)
G617130 NA non-coding upstream 37513 48824051 ~ 48824312 (+)
G617129 NA non-coding upstream 39830 48821699 ~ 48821995 (+)
G617126 NA non-coding upstream 43519 48818052 ~ 48818306 (+)
G617122 NA non-coding upstream 48537 48813019 ~ 48813288 (+)
G617119 NA non-coding upstream 50196 48811358 ~ 48811629 (+)
G617167 NA non-coding downstream 64147 48938602 ~ 48945932 (+)
G617203 NA non-coding downstream 72219 48946674 ~ 48947014 (+)
G617204 NA non-coding downstream 74322 48948777 ~ 48949069 (+)
G617214 NA non-coding downstream 96106 48970561 ~ 48970767 (+)
G617224 LOC106582921 non-coding downstream 126946 49001401 ~ 49001733 (+)
G617133 NA other upstream 34598 48826827 ~ 48827227 (+)
G615624 NA other upstream 1022103 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 2223871 46629591 ~ 46638492 (+)
G613664 NA other upstream 2582492 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 4833597 44002556 ~ 44035143 (+)
tafa4b LOC106583040 other downstream 697865 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 1428975 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 2086039 50960494 ~ 51079129 (+)
G621650 NA other downstream 3516893 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 3616713 52491168 ~ 52493240 (+)

Expression


Co-expression Network